Wall clock time and date at job start Tue Mar 31 2020 06:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47473 * 2 1 4 4 N 1.46906 * 109.47378 * 179.97438 * 3 2 1 5 5 C 1.46897 * 110.99771 * 293.95638 * 4 3 2 6 6 C 1.46898 * 110.99890 * 170.00285 * 4 3 2 7 7 C 1.50700 * 109.47068 * 190.00323 * 6 4 3 8 8 O 1.21286 * 119.99792 * 359.97438 * 7 6 4 9 9 N 1.34782 * 120.00317 * 180.02562 * 7 6 4 10 10 C 1.46924 * 120.62798 * 359.71589 * 9 7 6 11 11 C 1.53619 * 108.54568 * 126.37170 * 10 9 7 12 12 C 1.53042 * 109.24108 * 54.85051 * 11 10 9 13 13 C 1.53004 * 109.45870 * 178.49212 * 12 11 10 14 14 C 1.50692 * 109.47260 * 295.07222 * 13 12 11 15 15 H 1.08007 * 120.00085 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00310 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99524 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00333 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47276 * 59.99974 * 18 16 14 20 20 H 1.48505 * 109.47235 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46946 * 299.99757 * 18 16 14 22 22 C 1.53040 * 109.54107 * 298.51656 * 12 11 10 23 23 C 1.46922 * 120.63075 * 179.97438 * 9 7 6 24 24 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47261 * 300.00171 * 1 2 3 26 26 H 1.09000 * 109.46870 * 59.99782 * 1 2 3 27 27 H 1.09004 * 109.47108 * 240.00112 * 2 1 3 28 28 H 1.09004 * 109.47368 * 120.00213 * 2 1 3 29 29 H 1.09004 * 109.46862 * 59.99962 * 3 2 1 30 30 H 1.09000 * 109.47250 * 299.99985 * 3 2 1 31 31 H 1.08997 * 109.47293 * 60.00221 * 5 4 3 32 32 H 1.09000 * 109.46769 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47106 * 299.99134 * 5 4 3 34 34 H 1.09004 * 109.47244 * 310.00126 * 6 4 3 35 35 H 1.08994 * 109.47665 * 70.00225 * 6 4 3 36 36 H 1.09000 * 109.58495 * 246.20810 * 10 9 7 37 37 H 1.09000 * 109.58760 * 6.63023 * 10 9 7 38 38 H 1.09003 * 109.63095 * 294.86944 * 11 10 9 39 39 H 1.09000 * 109.43623 * 174.72549 * 11 10 9 40 40 H 1.09007 * 109.44551 * 58.53167 * 12 11 10 41 41 H 1.08995 * 109.46944 * 55.07457 * 13 12 11 42 42 H 1.08998 * 109.46776 * 175.07188 * 13 12 11 43 43 H 0.96995 * 119.99699 * 179.97438 * 17 16 14 44 44 H 1.08998 * 109.49576 * 301.40900 * 22 12 11 45 45 H 1.08996 * 109.52311 * 181.32862 * 22 12 11 46 46 H 1.08995 * 109.58617 * 353.37222 * 23 9 7 47 47 H 1.09004 * 109.58289 * 113.65386 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0349 0.8857 1.2542 6 6 4.0356 2.7929 -0.2374 7 6 5.5220 2.7181 -0.4742 8 8 6.0871 1.6453 -0.4468 9 7 6.2236 3.8433 -0.7154 10 6 5.5523 5.1496 -0.7567 11 6 6.2699 6.0987 0.2149 12 6 7.7592 6.1464 -0.1343 13 6 8.4725 7.1194 0.8067 14 6 7.9602 8.5163 0.5675 15 1 7.2021 8.6926 -0.1813 16 6 8.4602 9.5695 1.3036 17 7 9.3845 9.3549 2.2143 18 14 7.8247 11.3009 1.0075 19 1 6.3634 11.3431 1.2677 20 1 8.5180 12.2454 1.9200 21 1 8.0882 11.6907 -0.4010 22 6 8.3662 4.7501 0.0203 23 6 7.6732 3.7864 -0.9475 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.6854 -0.1401 1.3711 32 1 5.1245 0.8971 1.2279 33 1 3.6852 1.4867 2.0936 34 1 3.5495 3.2234 -1.1130 35 1 3.8374 3.4188 0.6326 36 1 5.5999 5.5530 -1.7682 37 1 4.5110 5.0350 -0.4555 38 1 6.1472 5.7386 1.2363 39 1 5.8434 7.0980 0.1272 40 1 7.8799 6.4829 -1.1641 41 1 8.2783 6.8333 1.8404 42 1 9.5452 7.0882 0.6165 43 1 9.7365 10.0959 2.7319 44 1 8.2237 4.4027 1.0435 45 1 9.4318 4.7891 -0.2057 46 1 8.0318 2.7721 -0.7723 47 1 7.8904 4.0784 -1.9750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516972838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:24 Heat of formation + Delta-G solvation = -69.771034 kcal Electronic energy + Delta-G solvation = -22797.995326 eV Core-core repulsion = 19593.135712 eV Total energy + Delta-G solvation = -3204.859614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29715 -39.13321 -37.96688 -35.67420 -34.18829 -33.91769 -32.15995 -30.10324 -28.98594 -27.89807 -26.26889 -24.50344 -24.02952 -23.05337 -21.67441 -21.16462 -19.80485 -18.41585 -18.21166 -16.94353 -16.90375 -16.54579 -16.36884 -15.99301 -15.41169 -15.15826 -15.02683 -14.85042 -14.55085 -14.25974 -14.13496 -13.91615 -13.61291 -13.40306 -12.99633 -12.93247 -12.78040 -12.70933 -12.66007 -12.48330 -12.38728 -12.29136 -12.09885 -11.92025 -11.76071 -11.44378 -11.34195 -11.06973 -10.84621 -10.66643 -10.50695 -9.57546 -9.28706 -8.15465 -6.25280 1.42565 1.44928 1.52341 1.64708 1.96809 2.43647 2.96102 3.18244 3.55342 3.92565 3.98129 4.05488 4.11931 4.15216 4.21518 4.28496 4.29810 4.42821 4.49164 4.52859 4.56297 4.57228 4.69584 4.70468 4.82980 4.85050 4.90303 4.90799 4.97474 5.10271 5.10858 5.24664 5.31585 5.32013 5.33425 5.41190 5.44899 5.55628 5.61734 5.82325 5.90246 5.93564 6.10464 6.29401 6.49638 6.91739 7.23055 7.43625 8.96393 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025503 B = 0.003153 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.636208 B = 8879.617767 C = 9518.677729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.055 3.945 4 N -0.543 5.543 5 C 0.022 3.978 6 C 0.040 3.960 7 C 0.510 3.490 8 O -0.570 6.570 9 N -0.610 5.610 10 C 0.112 3.888 11 C -0.114 4.114 12 C -0.073 4.073 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.069 0.931 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.961 3.039 19 H -0.263 1.263 20 H -0.291 1.291 21 H -0.267 1.267 22 C -0.121 4.121 23 C 0.121 3.879 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.027 0.973 34 H 0.128 0.872 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.064 0.936 41 H -0.017 1.017 42 H -0.016 1.016 43 H 0.260 0.740 44 H 0.043 0.957 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.204 -13.929 -6.384 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.072 4.072 4 N -0.268 5.268 5 C -0.126 4.126 6 C -0.090 4.090 7 C 0.299 3.701 8 O -0.449 6.449 9 N -0.343 5.343 10 C -0.010 4.010 11 C -0.152 4.152 12 C -0.092 4.092 13 C -0.005 4.005 14 C -0.564 4.564 15 H 0.087 0.913 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.786 3.214 19 H -0.188 1.188 20 H -0.217 1.217 21 H -0.192 1.192 22 C -0.159 4.159 23 C -0.002 4.002 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.146 0.854 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.001 0.999 42 H 0.002 0.998 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.657 -14.709 -6.633 23.190 hybrid contribution 0.365 1.594 1.129 1.987 sum -16.291 -13.115 -5.504 21.627 Atomic orbital electron populations 1.21705 0.94249 1.02266 1.02237 1.21506 0.96351 0.95720 1.02154 1.22289 0.84957 0.98218 1.01716 1.61655 1.08709 1.20320 1.36101 1.22475 1.00996 1.00292 0.88829 1.22062 0.91079 0.91685 1.04221 1.21044 0.90402 0.83021 0.75588 1.90623 1.72323 1.29445 1.52502 1.48282 1.08549 1.07429 1.70083 1.22065 0.97021 0.81254 1.00671 1.21865 0.95207 0.99802 0.98331 1.21039 0.95345 0.93368 0.99415 1.19019 0.94024 0.93907 0.93533 1.21646 1.21930 0.93164 1.19659 0.91272 1.25996 0.95367 1.03790 0.95061 1.70115 1.30076 1.33013 1.24764 0.85557 0.78835 0.78832 0.78173 1.18814 1.21657 1.19168 1.21889 0.99879 0.95315 0.98822 1.21489 0.79627 0.99943 0.99132 0.92085 0.92465 0.92064 0.92062 0.92382 0.94116 0.89486 0.90483 0.92256 0.95474 0.85394 0.90565 0.89475 0.87373 0.93732 0.90451 0.91782 0.99876 0.99771 0.93094 0.93805 0.91265 0.90442 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.73 5.86 30.59 0.18 -1.55 16 3 C 0.06 0.85 4.96 86.30 0.43 1.28 16 4 N -0.54 -11.72 4.50 -927.07 -4.17 -15.89 16 5 C 0.02 0.50 8.96 127.69 1.14 1.65 16 6 C 0.04 0.81 3.79 85.56 0.32 1.14 16 7 C 0.51 14.25 7.39 87.66 0.65 14.89 16 8 O -0.57 -20.10 13.74 -3.05 -0.04 -20.15 16 9 N -0.61 -16.38 2.97 -818.16 -2.43 -18.81 16 10 C 0.11 2.56 6.37 86.51 0.55 3.11 16 11 C -0.11 -3.65 5.21 30.82 0.16 -3.49 16 12 C -0.07 -2.76 2.10 -10.76 -0.02 -2.79 16 13 C 0.03 1.64 4.45 29.85 0.13 1.77 16 14 C -0.53 -28.29 8.39 25.60 0.21 -28.07 16 15 H 0.07 3.45 7.06 -2.91 -0.02 3.43 16 16 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 17 N -0.94 -56.87 13.29 21.45 0.28 -56.59 16 18 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 19 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 C -0.12 -4.09 5.36 30.66 0.16 -3.92 16 23 C 0.12 3.49 6.43 86.35 0.55 4.04 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.06 0.89 6.55 -2.39 -0.02 0.87 16 29 H 0.04 0.59 8.12 -2.38 -0.02 0.57 16 30 H 0.09 1.13 7.93 -2.39 -0.02 1.11 16 31 H 0.08 1.57 6.47 -2.39 -0.02 1.55 16 32 H 0.06 1.71 5.82 -2.39 -0.01 1.70 16 33 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.13 1.91 7.72 -2.38 -0.02 1.89 16 35 H 0.08 1.38 7.68 -2.39 -0.02 1.37 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.11 1.80 5.93 -2.39 -0.01 1.79 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 2.60 6.91 -2.39 -0.02 2.58 16 40 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 41 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 43 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.08 2.39 7.00 -2.39 -0.02 2.37 16 47 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -68.46 361.35 2.24 -66.23 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.91 Total: 12.84 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 5.66 Total: -12.62 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -6.31 Total: -91.28 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.04 Total: -20.15 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -68.46 2.24 -66.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516972838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.542 kcal (2) G-P(sol) polarization free energy of solvation -68.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds