Wall clock time and date at job start Tue Mar 31 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46727 * 2 1 4 4 H 1.09001 * 109.46893 * 304.99806 * 3 2 1 5 5 C 1.52997 * 109.47327 * 65.00197 * 3 2 1 6 6 C 1.53001 * 109.46995 * 185.00015 * 3 2 1 7 7 H 1.09005 * 109.47336 * 59.99798 * 6 3 2 8 8 C 1.52999 * 109.47116 * 300.00038 * 6 3 2 9 9 N 1.46500 * 109.47360 * 179.97438 * 6 3 2 10 10 C 1.34776 * 119.99786 * 205.00362 * 9 6 3 11 11 O 1.21586 * 120.00504 * 354.90788 * 10 9 6 12 12 N 1.34788 * 119.99602 * 174.91305 * 10 9 6 13 13 C 1.46919 * 120.62808 * 4.74300 * 12 10 9 14 14 C 1.52763 * 109.00763 * 233.58360 * 13 12 10 15 15 C 1.53040 * 109.38396 * 305.59339 * 14 13 12 16 16 C 1.50698 * 109.44766 * 181.25037 * 15 14 13 17 17 H 1.07998 * 120.00437 * 245.37591 * 16 15 14 18 18 C 1.37879 * 120.00023 * 65.37926 * 16 15 14 19 19 N 1.31507 * 120.00083 * 355.14325 * 18 16 15 20 20 Si 1.86804 * 120.00129 * 175.14042 * 18 16 15 21 21 H 1.48498 * 109.47069 * 94.99833 * 20 18 16 22 22 H 1.48494 * 109.47132 * 215.00098 * 20 18 16 23 23 H 1.48505 * 109.46982 * 335.00022 * 20 18 16 24 24 C 1.53043 * 109.54055 * 61.23928 * 15 14 13 25 25 C 1.46922 * 120.62520 * 185.02613 * 12 10 9 26 26 H 1.08996 * 109.47191 * 60.00605 * 1 2 3 27 27 H 1.09004 * 109.46952 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47168 * 299.99884 * 1 2 3 29 29 H 1.09002 * 109.47168 * 240.00116 * 2 1 3 30 30 H 1.09004 * 109.47059 * 119.99691 * 2 1 3 31 31 H 1.08999 * 109.46750 * 299.99384 * 5 3 2 32 32 H 1.08996 * 109.47022 * 59.99783 * 5 3 2 33 33 H 1.08996 * 109.47035 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47070 * 299.99624 * 8 6 3 35 35 H 1.08999 * 109.47467 * 59.99579 * 8 6 3 36 36 H 1.08999 * 109.47139 * 180.02562 * 8 6 3 37 37 H 0.97001 * 119.99859 * 24.99420 * 9 6 3 38 38 H 1.09001 * 109.59278 * 353.42043 * 13 12 10 39 39 H 1.09000 * 109.58906 * 113.84942 * 13 12 10 40 40 H 1.08994 * 109.56836 * 185.55252 * 14 13 12 41 41 H 1.09007 * 109.38713 * 65.52016 * 14 13 12 42 42 H 1.09000 * 109.45826 * 301.21562 * 15 14 13 43 43 H 0.97003 * 120.00288 * 180.02562 * 19 18 16 44 44 H 1.08988 * 109.49977 * 178.68575 * 24 15 14 45 45 H 1.09001 * 109.52269 * 58.60070 * 24 15 14 46 46 H 1.09002 * 109.58390 * 246.15230 * 25 12 10 47 47 H 1.08992 * 109.59251 * 6.43773 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5647 1.4444 -0.1257 7 1 3.8532 0.9571 -1.0571 8 6 4.1748 0.6878 1.0559 9 7 4.0530 2.8257 -0.1264 10 6 5.2306 3.1238 -0.7102 11 8 5.9313 2.2350 -1.1544 12 7 5.6316 4.4074 -0.8015 13 6 4.8475 5.4826 -0.1789 14 6 4.5371 6.5456 -1.2312 15 6 5.8416 7.0134 -1.8807 16 6 5.5400 8.0841 -2.8974 17 1 5.7259 7.9013 -3.9455 18 6 5.0269 9.2972 -2.4897 19 7 4.7111 9.4866 -1.2272 20 14 4.7804 10.6716 -3.7305 21 1 3.3803 10.6470 -4.2248 22 1 5.0533 11.9791 -3.0816 23 1 5.7117 10.4813 -4.8715 24 6 6.5219 5.8301 -2.5729 25 6 6.8577 4.7585 -1.5309 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5489 2.1253 1.3968 32 1 2.0698 1.5876 2.1491 33 1 1.9981 3.1543 1.3071 34 1 3.8865 1.1752 1.9873 35 1 3.8115 -0.3398 1.0560 36 1 5.2612 0.6896 0.9666 37 1 3.5287 3.5256 0.2933 38 1 3.9154 5.0754 0.2131 39 1 5.4218 5.9316 0.6315 40 1 4.0415 7.3935 -0.7586 41 1 3.8835 6.1206 -1.9930 42 1 6.5044 7.4163 -1.1148 43 1 4.3498 10.3399 -0.9404 44 1 7.4388 6.1688 -3.0549 45 1 5.8502 5.4112 -3.3222 46 1 7.5994 5.1471 -0.8330 47 1 7.2530 3.8731 -2.0287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543779986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:35 Heat of formation + Delta-G solvation = -53.315684 kcal Electronic energy + Delta-G solvation = -23418.696207 eV Core-core repulsion = 20214.550150 eV Total energy + Delta-G solvation = -3204.146057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.11871 -38.10135 -36.61244 -33.91337 -33.40693 -31.42245 -30.25045 -29.75469 -28.81054 -26.12214 -25.35280 -23.43156 -22.54765 -22.02995 -20.11374 -19.44368 -18.78825 -17.60651 -16.29767 -15.98614 -15.54060 -15.05454 -14.82114 -14.57629 -14.27928 -13.91509 -13.59409 -13.30462 -13.04858 -12.68653 -12.60402 -12.37704 -12.35859 -12.25551 -12.10536 -11.89322 -11.56849 -11.32878 -11.07959 -10.95267 -10.89272 -10.71178 -10.64431 -10.49491 -10.35921 -10.16493 -9.70535 -9.50850 -9.15214 -8.93417 -8.84507 -8.38747 -7.85398 -6.04190 -4.09014 3.07615 3.27591 3.35251 3.39361 3.63256 4.26758 4.41041 4.56938 4.66385 4.76951 5.09018 5.24446 5.25834 5.31114 5.38485 5.41039 5.48515 5.57041 5.74384 5.78521 5.78877 5.80623 5.85048 5.88091 5.95393 6.02614 6.08225 6.10103 6.18632 6.21931 6.29974 6.39816 6.50352 6.68741 6.81656 6.91038 7.01884 7.15301 7.23816 7.50561 7.66630 7.91937 8.01236 8.37871 8.41194 8.95018 9.02010 9.55973 11.02150 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022325 B = 0.003839 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.900442 B = 7292.185209 C = 8003.059760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.101 4.101 4 H 0.076 0.924 5 C -0.152 4.152 6 C 0.166 3.834 7 H 0.083 0.917 8 C -0.165 4.165 9 N -0.747 5.747 10 C 0.706 3.294 11 O -0.606 6.606 12 N -0.619 5.619 13 C 0.111 3.889 14 C -0.121 4.121 15 C 0.050 3.950 16 C -0.512 4.512 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.124 4.124 25 C 0.130 3.870 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.395 0.605 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.038 0.962 42 H 0.029 0.971 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 -14.888 6.266 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.120 4.120 4 H 0.095 0.905 5 C -0.209 4.209 6 C 0.060 3.940 7 H 0.101 0.899 8 C -0.224 4.224 9 N -0.405 5.405 10 C 0.408 3.592 11 O -0.486 6.486 12 N -0.356 5.356 13 C -0.012 4.012 14 C -0.160 4.160 15 C 0.031 3.969 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.717 3.283 21 H -0.209 1.209 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.162 4.162 25 C 0.007 3.993 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.233 0.767 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.129 -15.370 6.048 17.618 hybrid contribution -0.521 1.311 -0.400 1.467 sum -6.651 -14.059 5.649 16.547 Atomic orbital electron populations 1.21821 0.95769 1.01467 1.02015 1.21566 0.95882 0.95658 1.02376 1.21447 0.94407 0.97051 0.99090 0.90528 1.21952 1.01485 1.00317 0.97194 1.20719 0.92035 0.81732 0.99479 0.89883 1.22288 1.01909 0.99851 0.98341 1.45457 1.22244 1.10159 1.62690 1.15876 0.81445 0.83092 0.78834 1.90837 1.55610 1.46282 1.55863 1.47404 1.27240 1.04328 1.56605 1.21780 0.93495 0.88782 0.97101 1.21929 1.01177 0.96540 0.96349 1.18624 0.92175 0.90975 0.95112 1.21211 1.42212 0.98020 0.93548 0.92720 1.24961 0.95334 0.98458 0.95188 1.69866 1.43798 1.24344 1.15037 0.86621 0.78341 0.81736 0.81557 1.20867 1.21215 1.19894 1.22029 1.00625 0.96413 0.97174 1.21553 0.84651 0.98790 0.94260 0.92720 0.92881 0.92459 0.91761 0.91470 0.92191 0.92060 0.92790 0.92475 0.91907 0.92039 0.76726 0.92682 0.92064 0.88375 0.94299 0.95240 0.93041 0.92108 0.93086 0.92572 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C -0.12 -0.94 4.90 -26.73 -0.13 -1.08 16 3 C -0.10 -0.97 2.38 -90.62 -0.22 -1.18 16 4 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 5 C -0.15 -1.32 8.42 37.16 0.31 -1.00 16 6 C 0.17 2.03 2.36 -67.93 -0.16 1.87 16 7 H 0.08 1.18 7.65 -51.93 -0.40 0.78 16 8 C -0.17 -1.85 8.78 37.16 0.33 -1.53 16 9 N -0.75 -10.80 4.91 -58.67 -0.29 -11.09 16 10 C 0.71 12.96 8.26 -86.91 -0.72 12.25 16 11 O -0.61 -12.82 15.45 5.29 0.08 -12.74 16 12 N -0.62 -11.49 2.98 -178.76 -0.53 -12.02 16 13 C 0.11 1.99 6.40 -3.93 -0.03 1.97 16 14 C -0.12 -2.65 5.18 -26.83 -0.14 -2.79 16 15 C 0.05 1.18 2.01 -91.73 -0.18 1.00 16 16 C -0.51 -13.63 8.49 -34.44 -0.29 -13.93 16 17 H 0.05 1.46 7.75 -52.49 -0.41 1.06 16 18 C 0.06 1.65 5.36 -17.82 -0.10 1.56 16 19 N -0.89 -24.38 11.53 55.43 0.64 -23.74 16 20 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.12 -2.58 5.30 -26.61 -0.14 -2.72 16 25 C 0.13 2.46 6.42 -3.71 -0.02 2.44 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.40 6.57 -51.93 -0.34 0.05 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.51 6.71 -51.93 -0.35 0.16 16 31 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 32 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 33 H 0.05 0.49 6.51 -51.93 -0.34 0.15 16 34 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 35 H 0.06 0.58 6.54 -51.93 -0.34 0.24 16 36 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.39 5.16 4.33 -40.82 -0.18 4.98 16 38 H 0.05 0.83 5.57 -51.93 -0.29 0.54 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.10 2.37 6.30 -51.93 -0.33 2.05 16 41 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 44 H 0.06 1.22 8.14 -51.94 -0.42 0.79 16 45 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.08 1.49 7.03 -51.93 -0.37 1.12 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -29.28 351.86 -9.07 -38.35 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.12 Total: 4.04 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.13 Total: -3.90 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.18 Total: -46.85 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.08 Total: -12.74 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.28 -9.07 -38.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543779986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.968 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds