Wall clock time and date at job start Tue Mar 31 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46727 * 2 1 4 4 H 1.09001 * 109.46893 * 304.99806 * 3 2 1 5 5 C 1.52997 * 109.47327 * 65.00197 * 3 2 1 6 6 C 1.53001 * 109.46995 * 185.00015 * 3 2 1 7 7 H 1.09005 * 109.47336 * 59.99798 * 6 3 2 8 8 C 1.52999 * 109.47116 * 300.00038 * 6 3 2 9 9 N 1.46500 * 109.47360 * 179.97438 * 6 3 2 10 10 C 1.34776 * 119.99786 * 205.00362 * 9 6 3 11 11 O 1.21586 * 120.00504 * 354.90788 * 10 9 6 12 12 N 1.34788 * 119.99602 * 174.91305 * 10 9 6 13 13 C 1.46919 * 120.62808 * 4.74300 * 12 10 9 14 14 C 1.52763 * 109.00763 * 233.58360 * 13 12 10 15 15 C 1.53040 * 109.38396 * 305.59339 * 14 13 12 16 16 C 1.50698 * 109.44766 * 181.25037 * 15 14 13 17 17 H 1.07998 * 120.00437 * 245.37591 * 16 15 14 18 18 C 1.37879 * 120.00023 * 65.37926 * 16 15 14 19 19 N 1.31507 * 120.00083 * 355.14325 * 18 16 15 20 20 Si 1.86804 * 120.00129 * 175.14042 * 18 16 15 21 21 H 1.48498 * 109.47069 * 94.99833 * 20 18 16 22 22 H 1.48494 * 109.47132 * 215.00098 * 20 18 16 23 23 H 1.48505 * 109.46982 * 335.00022 * 20 18 16 24 24 C 1.53043 * 109.54055 * 61.23928 * 15 14 13 25 25 C 1.46922 * 120.62520 * 185.02613 * 12 10 9 26 26 H 1.08996 * 109.47191 * 60.00605 * 1 2 3 27 27 H 1.09004 * 109.46952 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47168 * 299.99884 * 1 2 3 29 29 H 1.09002 * 109.47168 * 240.00116 * 2 1 3 30 30 H 1.09004 * 109.47059 * 119.99691 * 2 1 3 31 31 H 1.08999 * 109.46750 * 299.99384 * 5 3 2 32 32 H 1.08996 * 109.47022 * 59.99783 * 5 3 2 33 33 H 1.08996 * 109.47035 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47070 * 299.99624 * 8 6 3 35 35 H 1.08999 * 109.47467 * 59.99579 * 8 6 3 36 36 H 1.08999 * 109.47139 * 180.02562 * 8 6 3 37 37 H 0.97001 * 119.99859 * 24.99420 * 9 6 3 38 38 H 1.09001 * 109.59278 * 353.42043 * 13 12 10 39 39 H 1.09000 * 109.58906 * 113.84942 * 13 12 10 40 40 H 1.08994 * 109.56836 * 185.55252 * 14 13 12 41 41 H 1.09007 * 109.38713 * 65.52016 * 14 13 12 42 42 H 1.09000 * 109.45826 * 301.21562 * 15 14 13 43 43 H 0.97003 * 120.00288 * 180.02562 * 19 18 16 44 44 H 1.08988 * 109.49977 * 178.68575 * 24 15 14 45 45 H 1.09001 * 109.52269 * 58.60070 * 24 15 14 46 46 H 1.09002 * 109.58390 * 246.15230 * 25 12 10 47 47 H 1.08992 * 109.59251 * 6.43773 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5647 1.4444 -0.1257 7 1 3.8532 0.9571 -1.0571 8 6 4.1748 0.6878 1.0559 9 7 4.0530 2.8257 -0.1264 10 6 5.2306 3.1238 -0.7102 11 8 5.9313 2.2350 -1.1544 12 7 5.6316 4.4074 -0.8015 13 6 4.8475 5.4826 -0.1789 14 6 4.5371 6.5456 -1.2312 15 6 5.8416 7.0134 -1.8807 16 6 5.5400 8.0841 -2.8974 17 1 5.7259 7.9013 -3.9455 18 6 5.0269 9.2972 -2.4897 19 7 4.7111 9.4866 -1.2272 20 14 4.7804 10.6716 -3.7305 21 1 3.3803 10.6470 -4.2248 22 1 5.0533 11.9791 -3.0816 23 1 5.7117 10.4813 -4.8715 24 6 6.5219 5.8301 -2.5729 25 6 6.8577 4.7585 -1.5309 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5489 2.1253 1.3968 32 1 2.0698 1.5876 2.1491 33 1 1.9981 3.1543 1.3071 34 1 3.8865 1.1752 1.9873 35 1 3.8115 -0.3398 1.0560 36 1 5.2612 0.6896 0.9666 37 1 3.5287 3.5256 0.2933 38 1 3.9154 5.0754 0.2131 39 1 5.4218 5.9316 0.6315 40 1 4.0415 7.3935 -0.7586 41 1 3.8835 6.1206 -1.9930 42 1 6.5044 7.4163 -1.1148 43 1 4.3498 10.3399 -0.9404 44 1 7.4388 6.1688 -3.0549 45 1 5.8502 5.4112 -3.3222 46 1 7.5994 5.1471 -0.8330 47 1 7.2530 3.8731 -2.0287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543779986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:34 Heat of formation + Delta-G solvation = -68.874468 kcal Electronic energy + Delta-G solvation = -23419.370886 eV Core-core repulsion = 20214.550150 eV Total energy + Delta-G solvation = -3204.820736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.50431 -39.24994 -38.08208 -35.35829 -34.91017 -33.04177 -31.80740 -30.95216 -29.59519 -27.93307 -26.14524 -24.94417 -24.04160 -23.30242 -21.61879 -20.56313 -20.12001 -19.05195 -18.28549 -17.31027 -16.54676 -16.51873 -16.26423 -15.77662 -15.51616 -15.04368 -14.89909 -14.74372 -14.47885 -14.24181 -14.16657 -13.65303 -13.32074 -13.18033 -13.06703 -13.01829 -12.87809 -12.80978 -12.63652 -12.46356 -12.15288 -12.01987 -11.85910 -11.62551 -11.49357 -11.43238 -11.30147 -11.14865 -10.99755 -10.79501 -10.39677 -10.14289 -9.37509 -8.08296 -6.19996 1.41194 1.43937 1.53296 1.73421 2.18272 2.44901 2.94521 3.19278 3.73726 3.90905 4.01900 4.11476 4.21672 4.34653 4.37182 4.42030 4.46348 4.54360 4.58817 4.67952 4.69721 4.72712 4.76749 4.89023 4.93420 4.96851 5.02665 5.09771 5.16818 5.19986 5.21070 5.24185 5.25780 5.31377 5.43348 5.51615 5.54957 5.60425 5.64621 5.68501 5.98757 6.08336 6.11900 6.40185 6.89512 7.00693 7.47404 7.59604 8.96127 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022325 B = 0.003839 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.900442 B = 7292.185209 C = 8003.059760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.093 4.093 4 H 0.067 0.933 5 C -0.152 4.152 6 C 0.162 3.838 7 H 0.061 0.939 8 C -0.158 4.158 9 N -0.734 5.734 10 C 0.702 3.298 11 O -0.636 6.636 12 N -0.623 5.623 13 C 0.122 3.878 14 C -0.110 4.110 15 C 0.047 3.953 16 C -0.535 4.535 17 H 0.046 0.954 18 C 0.019 3.981 19 N -0.911 5.911 20 Si 0.948 3.052 21 H -0.278 1.278 22 H -0.282 1.282 23 H -0.273 1.273 24 C -0.113 4.113 25 C 0.136 3.864 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.403 0.597 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.027 0.973 42 H 0.006 0.994 43 H 0.261 0.739 44 H 0.064 0.936 45 H 0.040 0.960 46 H 0.067 0.933 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -15.631 7.119 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.112 4.112 4 H 0.085 0.915 5 C -0.209 4.209 6 C 0.057 3.943 7 H 0.079 0.921 8 C -0.216 4.216 9 N -0.393 5.393 10 C 0.404 3.596 11 O -0.518 6.518 12 N -0.360 5.360 13 C -0.001 4.001 14 C -0.149 4.149 15 C 0.028 3.972 16 C -0.573 4.573 17 H 0.064 0.936 18 C -0.181 4.181 19 N -0.550 5.550 20 Si 0.774 3.226 21 H -0.204 1.204 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.152 4.152 25 C 0.013 3.987 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.242 0.758 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.024 0.976 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.328 -16.122 6.916 19.012 hybrid contribution -0.165 1.524 -0.681 1.678 sum -7.493 -14.598 6.235 17.553 Atomic orbital electron populations 1.21808 0.94919 1.02112 1.02066 1.21562 0.96560 0.94438 1.02701 1.21386 0.92033 0.98299 0.99484 0.91470 1.21964 1.02389 0.99905 0.96622 1.20907 0.93986 0.80353 0.99047 0.92122 1.22220 0.99974 1.01192 0.98243 1.45455 1.20837 1.11469 1.61497 1.16040 0.82168 0.82520 0.78903 1.90814 1.56774 1.46992 1.57230 1.47402 1.27185 1.04648 1.56719 1.21650 0.94992 0.87743 0.95678 1.21684 0.99619 0.96845 0.96787 1.18591 0.92859 0.91460 0.94255 1.21529 1.42579 0.99398 0.93776 0.93576 1.25624 0.95162 1.00422 0.96845 1.69966 1.44047 1.24799 1.16232 0.85706 0.78255 0.79136 0.79509 1.20416 1.20781 1.19764 1.21874 1.00218 0.95847 0.97231 1.21437 0.85216 0.98011 0.94045 0.93255 0.91991 0.91826 0.92208 0.90419 0.90970 0.91211 0.93297 0.91133 0.89724 0.94780 0.75762 0.89509 0.91629 0.90663 0.95407 0.97579 0.92937 0.91701 0.94164 0.91515 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.67 71.98 0.70 -1.15 16 2 C -0.11 -1.60 4.90 30.59 0.15 -1.45 16 3 C -0.09 -1.61 2.38 -10.79 -0.03 -1.63 16 4 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 5 C -0.15 -2.21 8.42 71.98 0.61 -1.60 16 6 C 0.16 3.77 2.36 44.99 0.11 3.88 16 7 H 0.06 1.71 7.65 -2.38 -0.02 1.69 16 8 C -0.16 -3.27 8.78 71.98 0.63 -2.63 16 9 N -0.73 -20.30 4.91 -457.80 -2.25 -22.55 16 10 C 0.70 25.28 8.26 179.05 1.48 26.76 16 11 O -0.64 -26.82 15.45 -3.99 -0.06 -26.88 16 12 N -0.62 -22.65 2.98 -837.74 -2.50 -25.15 16 13 C 0.12 4.24 6.40 86.22 0.55 4.79 16 14 C -0.11 -4.85 5.18 30.53 0.16 -4.69 16 15 C 0.05 2.26 2.01 -11.51 -0.02 2.24 16 16 C -0.53 -28.87 8.49 25.60 0.22 -28.65 16 17 H 0.05 2.50 7.75 -2.91 -0.02 2.48 16 18 C 0.02 1.00 5.36 84.66 0.45 1.45 16 19 N -0.91 -50.10 11.53 21.45 0.25 -49.86 16 20 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C -0.11 -4.74 5.30 30.68 0.16 -4.58 16 25 C 0.14 5.09 6.42 86.37 0.55 5.65 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.70 6.57 -2.39 -0.02 0.68 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.93 6.71 -2.39 -0.02 0.92 16 31 H 0.07 0.90 6.56 -2.39 -0.02 0.88 16 32 H 0.07 0.91 6.43 -2.39 -0.02 0.90 16 33 H 0.05 0.76 6.51 -2.39 -0.02 0.75 16 34 H 0.07 1.27 6.43 -2.39 -0.02 1.25 16 35 H 0.08 1.37 6.54 -2.39 -0.02 1.35 16 36 H 0.03 0.89 8.09 -2.39 -0.02 0.87 16 37 H 0.40 9.72 4.33 -92.71 -0.40 9.32 16 38 H 0.09 2.45 5.57 -2.39 -0.01 2.44 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.07 3.67 6.30 -2.39 -0.02 3.66 16 41 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 44 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.08 2.96 7.03 -2.39 -0.02 2.94 16 Total: -1.00 -62.91 351.86 3.73 -59.18 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.54 Total: 22.09 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.72 Total: -1.62 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -4.50 Total: -97.56 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.06 Total: -26.88 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -62.91 3.73 -59.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543779986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.690 kcal (2) G-P(sol) polarization free energy of solvation -62.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds