Wall clock time and date at job start Tue Mar 31 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 H 1.09009 * 109.46712 * 55.00259 * 3 2 1 5 5 C 1.52997 * 109.47546 * 295.00326 * 3 2 1 6 6 C 1.53001 * 109.47000 * 174.99907 * 3 2 1 7 7 H 1.08997 * 109.47430 * 305.00229 * 6 3 2 8 8 C 1.52998 * 109.46610 * 65.00647 * 6 3 2 9 9 N 1.46495 * 109.47006 * 185.00356 * 6 3 2 10 10 C 1.34773 * 120.00225 * 155.00263 * 9 6 3 11 11 O 1.21591 * 119.99902 * 355.01065 * 10 9 6 12 12 N 1.34780 * 120.00637 * 175.00759 * 10 9 6 13 13 C 1.46920 * 120.63341 * 184.94518 * 12 10 9 14 14 C 1.52757 * 109.01015 * 233.58456 * 13 12 10 15 15 C 1.53040 * 109.38588 * 305.59189 * 14 13 12 16 16 C 1.50701 * 109.45124 * 181.25061 * 15 14 13 17 17 H 1.08003 * 120.00164 * 239.94333 * 16 15 14 18 18 C 1.37876 * 119.99737 * 59.93838 * 16 15 14 19 19 N 1.31512 * 120.00430 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99909 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47167 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47521 * 120.00011 * 20 18 16 23 23 H 1.48501 * 109.47419 * 240.00175 * 20 18 16 24 24 C 1.53044 * 109.53730 * 61.23947 * 15 14 13 25 25 C 1.46932 * 120.62405 * 5.22968 * 12 10 9 26 26 H 1.09002 * 109.47657 * 59.99741 * 1 2 3 27 27 H 1.09002 * 109.47268 * 299.99737 * 1 2 3 28 28 H 1.09005 * 109.47343 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47539 * 120.00517 * 2 1 3 30 30 H 1.09001 * 109.46842 * 240.00907 * 2 1 3 31 31 H 1.09003 * 109.46969 * 300.00181 * 5 3 2 32 32 H 1.09006 * 109.46905 * 59.99895 * 5 3 2 33 33 H 1.08999 * 109.47225 * 179.97438 * 5 3 2 34 34 H 1.09000 * 109.47825 * 60.00110 * 8 6 3 35 35 H 1.09006 * 109.46938 * 179.97438 * 8 6 3 36 36 H 1.08998 * 109.47417 * 299.99231 * 8 6 3 37 37 H 0.97007 * 119.99961 * 334.99828 * 9 6 3 38 38 H 1.08997 * 109.58757 * 353.42648 * 13 12 10 39 39 H 1.09002 * 109.58585 * 113.84736 * 13 12 10 40 40 H 1.08998 * 109.56691 * 185.55357 * 14 13 12 41 41 H 1.09008 * 109.38341 * 65.51761 * 14 13 12 42 42 H 1.08994 * 109.46148 * 301.21778 * 15 14 13 43 43 H 0.96998 * 120.00272 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.49675 * 178.68660 * 24 15 14 45 45 H 1.09000 * 109.52790 * 58.60297 * 24 15 14 46 46 H 1.09001 * 109.58551 * 246.15256 * 25 12 10 47 47 H 1.09004 * 109.59000 * 6.43817 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 0.8419 5 6 1.6351 2.1267 -1.3073 6 6 3.5647 1.4444 0.1257 7 1 3.8570 0.8801 1.0113 8 6 4.1796 0.7978 -1.1171 9 7 4.0431 2.8238 0.2459 10 6 5.2188 3.0789 0.8534 11 8 5.8387 2.1760 1.3815 12 7 5.7075 4.3348 0.8757 13 6 7.0364 4.6111 1.4380 14 6 6.9110 5.7049 2.4968 15 6 6.2202 6.9264 1.8861 16 6 6.1233 8.0177 2.9208 17 1 5.1563 8.3974 3.2164 18 6 7.2691 8.5314 3.4903 19 7 8.4465 8.0695 3.1301 20 14 7.1490 9.8837 4.7734 21 1 5.7217 10.2253 5.0005 22 1 7.7546 9.4144 6.0454 23 1 7.8751 11.0871 4.2938 24 6 4.8147 6.5396 1.4200 25 6 4.9187 5.4544 0.3436 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8899 30 1 1.8932 -0.5137 -0.8901 31 1 2.0697 1.5877 -2.1491 32 1 0.5487 2.1254 -1.3968 33 1 1.9980 3.1545 -1.3070 34 1 3.8874 1.3621 -2.0027 35 1 5.2660 0.7995 -1.0278 36 1 3.8238 -0.2286 -1.2065 37 1 3.5137 3.5537 -0.1119 38 1 7.4352 3.7056 1.8953 39 1 7.7054 4.9480 0.6461 40 1 7.9030 5.9867 2.8498 41 1 6.3194 5.3327 3.3333 42 1 6.7997 7.2835 1.0349 43 1 9.2526 8.4307 3.5310 44 1 4.3147 7.4154 1.0064 45 1 4.2420 6.1593 2.2658 46 1 5.4114 5.8615 -0.5393 47 1 3.9213 5.1046 0.0769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543779990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:38 Heat of formation + Delta-G solvation = -52.793200 kcal Electronic energy + Delta-G solvation = -23332.569458 eV Core-core repulsion = 20128.446058 eV Total energy + Delta-G solvation = -3204.123400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.11978 -38.11793 -36.61472 -33.96063 -33.41790 -31.23363 -30.61980 -29.61885 -28.72798 -26.14174 -25.45792 -23.38735 -22.66984 -21.90833 -20.10122 -19.53832 -18.78375 -17.59353 -16.34347 -15.95255 -15.54090 -15.16278 -14.82099 -14.54860 -14.24222 -13.92625 -13.65856 -13.27617 -13.08815 -12.73722 -12.60147 -12.40832 -12.33728 -12.26858 -12.12350 -11.95345 -11.79052 -11.12920 -11.09561 -10.94569 -10.92379 -10.75335 -10.61719 -10.55339 -10.39920 -10.03580 -9.68706 -9.53907 -9.15824 -8.91254 -8.84333 -8.35274 -7.84859 -6.00354 -4.07010 3.06868 3.28663 3.37176 3.40385 3.62788 4.24141 4.42451 4.52588 4.62643 4.72441 5.05638 5.20445 5.27483 5.29425 5.33639 5.36192 5.37766 5.47377 5.70039 5.74602 5.76144 5.78664 5.79307 5.82356 5.84088 5.99250 6.02950 6.08810 6.16700 6.30853 6.35092 6.45607 6.53657 6.64501 6.79512 6.86004 7.01128 7.19700 7.28198 7.54233 7.73516 7.95548 8.08667 8.38173 8.42301 8.96495 9.02622 9.58021 11.05039 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031234 B = 0.003452 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.249469 B = 8108.949911 C = 8496.867080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.100 4.100 4 H 0.076 0.924 5 C -0.152 4.152 6 C 0.164 3.836 7 H 0.086 0.914 8 C -0.165 4.165 9 N -0.748 5.748 10 C 0.705 3.295 11 O -0.602 6.602 12 N -0.619 5.619 13 C 0.127 3.873 14 C -0.124 4.124 15 C 0.050 3.950 16 C -0.512 4.512 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.124 4.124 25 C 0.114 3.886 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.393 0.607 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.103 0.897 41 H 0.037 0.963 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.996 -12.492 -9.714 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.120 4.120 4 H 0.094 0.906 5 C -0.209 4.209 6 C 0.058 3.942 7 H 0.104 0.896 8 C -0.224 4.224 9 N -0.406 5.406 10 C 0.407 3.593 11 O -0.481 6.481 12 N -0.355 5.355 13 C 0.005 3.995 14 C -0.162 4.162 15 C 0.031 3.969 16 C -0.551 4.551 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.718 3.282 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.162 4.162 25 C -0.009 4.009 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.230 0.770 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.324 -13.111 -9.300 20.255 hybrid contribution -0.278 1.235 0.560 1.384 sum -12.601 -11.876 -8.741 19.397 Atomic orbital electron populations 1.21818 0.95766 1.01507 1.01950 1.21556 0.95881 0.95644 1.02428 1.21447 0.94445 0.97087 0.98978 0.90572 1.21969 1.01371 1.00276 0.97300 1.20740 0.92105 0.82341 0.99006 0.89585 1.22295 1.01741 1.00351 0.97999 1.45423 1.22465 1.08784 1.63977 1.15891 0.81072 0.83247 0.79129 1.90851 1.60910 1.44630 1.51720 1.47451 1.19559 1.04705 1.63813 1.21658 0.80910 0.99988 0.96954 1.21943 1.04645 0.93889 0.95768 1.18620 0.89457 0.92863 0.95935 1.21225 0.92562 1.18792 1.22490 0.92731 1.24966 0.95474 0.96781 0.96792 1.69854 0.97369 1.42402 1.43245 0.86569 0.78058 0.81963 0.81586 1.19877 1.21055 1.21080 1.22011 1.01551 0.95899 0.96727 1.21692 0.93606 0.88102 0.97539 0.92493 0.92741 0.92851 0.91700 0.91518 0.91974 0.92296 0.92881 0.92351 0.92226 0.91870 0.77032 0.90584 0.92676 0.87870 0.94413 0.95498 0.93016 0.92215 0.92939 0.92019 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.67 37.15 0.36 -0.68 16 2 C -0.12 -0.90 5.03 -26.73 -0.13 -1.04 16 3 C -0.10 -0.90 2.32 -90.62 -0.21 -1.11 16 4 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 5 C -0.15 -1.17 8.33 37.16 0.31 -0.86 16 6 C 0.16 1.94 2.39 -67.93 -0.16 1.78 16 7 H 0.09 1.21 7.51 -51.93 -0.39 0.82 16 8 C -0.17 -1.79 8.75 37.16 0.33 -1.46 16 9 N -0.75 -10.38 4.92 -58.68 -0.29 -10.67 16 10 C 0.70 12.98 8.26 -86.92 -0.72 12.26 16 11 O -0.60 -13.12 15.39 5.29 0.08 -13.04 16 12 N -0.62 -11.51 2.98 -178.76 -0.53 -12.04 16 13 C 0.13 2.62 6.41 -3.94 -0.03 2.60 16 14 C -0.12 -2.92 5.14 -26.84 -0.14 -3.06 16 15 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 16 C -0.51 -13.73 8.56 -34.44 -0.29 -14.02 16 17 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 18 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 19 N -0.89 -24.92 11.31 55.43 0.63 -24.29 16 20 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 25 C 0.11 1.86 6.39 -3.71 -0.02 1.83 16 26 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.48 6.81 -51.93 -0.35 0.12 16 31 H 0.06 0.46 6.35 -51.93 -0.33 0.13 16 32 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 33 H 0.05 0.42 6.77 -51.93 -0.35 0.07 16 34 H 0.06 0.57 6.35 -51.93 -0.33 0.24 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.57 6.68 -51.93 -0.35 0.22 16 37 H 0.39 4.68 4.66 -40.82 -0.19 4.49 16 38 H 0.08 1.62 6.99 -51.93 -0.36 1.26 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.10 2.70 6.03 -51.93 -0.31 2.39 16 41 H 0.04 0.92 8.14 -51.92 -0.42 0.50 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -30.08 351.92 -9.10 -39.19 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -8.13 Total: 3.27 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -1.14 Total: -3.75 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.19 Total: -47.01 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.08 -9.10 -39.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543779990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.606 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds