Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47275 * 2 1 4 4 H 1.09008 * 109.46966 * 55.00021 * 3 2 1 5 5 C 1.52997 * 109.47391 * 294.99845 * 3 2 1 6 6 C 1.52999 * 109.47153 * 174.99918 * 3 2 1 7 7 H 1.08996 * 109.47240 * 59.99741 * 6 3 2 8 8 C 1.53005 * 109.47053 * 300.00022 * 6 3 2 9 9 N 1.46503 * 109.47061 * 180.02562 * 6 3 2 10 10 C 1.34776 * 119.99517 * 204.99669 * 9 6 3 11 11 O 1.21589 * 120.00486 * 355.02686 * 10 9 6 12 12 N 1.34778 * 119.99607 * 175.02514 * 10 9 6 13 13 C 1.46930 * 120.63243 * 184.94994 * 12 10 9 14 14 C 1.52757 * 109.00616 * 233.58230 * 13 12 10 15 15 C 1.53042 * 109.38790 * 305.58654 * 14 13 12 16 16 C 1.50695 * 109.45026 * 181.25718 * 15 14 13 17 17 H 1.08003 * 119.99813 * 239.93924 * 16 15 14 18 18 C 1.37878 * 120.00259 * 59.93516 * 16 15 14 19 19 N 1.31513 * 119.99712 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99961 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46814 * 60.00566 * 20 18 16 22 22 H 1.48500 * 109.47041 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47520 * 300.00284 * 20 18 16 24 24 C 1.53035 * 109.53612 * 61.23713 * 15 14 13 25 25 C 1.46929 * 120.63276 * 5.22402 * 12 10 9 26 26 H 1.08998 * 109.47209 * 300.00089 * 1 2 3 27 27 H 1.09007 * 109.46542 * 60.00260 * 1 2 3 28 28 H 1.09003 * 109.46972 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46925 * 120.00561 * 2 1 3 30 30 H 1.09004 * 109.47254 * 239.99445 * 2 1 3 31 31 H 1.09000 * 109.47247 * 59.99725 * 5 3 2 32 32 H 1.08994 * 109.47258 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.47123 * 300.00441 * 5 3 2 34 34 H 1.09000 * 109.47388 * 180.02562 * 8 6 3 35 35 H 1.09003 * 109.46955 * 300.00361 * 8 6 3 36 36 H 1.08999 * 109.47148 * 59.99577 * 8 6 3 37 37 H 0.96999 * 120.00057 * 25.00281 * 9 6 3 38 38 H 1.09001 * 109.58016 * 353.41545 * 13 12 10 39 39 H 1.08998 * 109.58496 * 113.83868 * 13 12 10 40 40 H 1.09000 * 109.56154 * 185.54562 * 14 13 12 41 41 H 1.09003 * 109.38740 * 65.51718 * 14 13 12 42 42 H 1.09002 * 109.45129 * 301.22231 * 15 14 13 43 43 H 0.97008 * 119.99673 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.49561 * 178.68271 * 24 15 14 45 45 H 1.09006 * 109.52540 * 58.60748 * 24 15 14 46 46 H 1.08997 * 109.59105 * 246.15744 * 25 12 10 47 47 H 1.09000 * 109.58034 * 6.44257 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6354 2.1265 -1.3073 6 6 3.5649 1.4442 0.1257 7 1 3.9995 0.9052 -0.7160 8 6 3.9696 0.7601 1.4331 9 7 4.0532 2.8255 0.1264 10 6 5.3119 3.0953 -0.2727 11 8 6.0710 2.1859 -0.5467 12 7 5.7292 4.3733 -0.3680 13 6 7.0606 4.6882 -0.9038 14 6 7.8065 5.5649 0.1004 15 6 6.9559 6.7930 0.4328 16 6 7.7035 7.6744 1.3998 17 1 7.2801 7.8935 2.3689 18 6 8.9280 8.2011 1.0474 19 7 9.4433 7.9346 -0.1329 20 14 9.8543 9.2943 2.2458 21 1 10.1350 8.5364 3.4916 22 1 11.1344 9.7290 1.6313 23 1 9.0299 10.4868 2.5669 24 6 5.6365 6.3455 1.0660 25 6 4.8638 5.4779 0.0675 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 0.5491 2.1252 -1.3970 32 1 1.9984 3.1542 -1.3071 33 1 2.0700 1.5874 -2.1491 34 1 5.0559 0.7618 1.5230 35 1 3.5349 1.2992 2.2749 36 1 3.6062 -0.2675 1.4332 37 1 3.4706 3.5457 0.4140 38 1 7.6172 3.7649 -1.0650 39 1 6.9573 5.2245 -1.8471 40 1 8.7557 5.8852 -0.3291 41 1 7.9930 4.9944 1.0103 42 1 6.7495 7.3498 -0.4812 43 1 10.3046 8.3055 -0.3810 44 1 5.0412 7.2213 1.3239 45 1 5.8424 5.7675 1.9670 46 1 4.5778 6.0800 -0.7948 47 1 3.9702 5.0755 0.5448 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543779991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = -54.057331 kcal Electronic energy + Delta-G solvation = -23329.782177 eV Core-core repulsion = 20125.603960 eV Total energy + Delta-G solvation = -3204.178217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09436 -38.01158 -36.58602 -33.97606 -33.42687 -31.21442 -30.54926 -29.52078 -29.41349 -26.09256 -24.63487 -23.37321 -22.65237 -21.84783 -20.27994 -20.01941 -18.72969 -17.60367 -16.34257 -16.09238 -15.26273 -14.98513 -14.75474 -14.52484 -14.28021 -13.76800 -13.55799 -13.40891 -13.05290 -12.87535 -12.68305 -12.55596 -12.34797 -12.11782 -11.93876 -11.81664 -11.72992 -11.41945 -11.09437 -10.93395 -10.88833 -10.72485 -10.66829 -10.56717 -10.40391 -10.03236 -9.67809 -9.53236 -9.16101 -8.90471 -8.85109 -8.34574 -7.84362 -5.99993 -4.06783 3.06700 3.31019 3.36199 3.38421 3.63256 4.23854 4.42483 4.49373 4.65316 4.73899 5.05869 5.23014 5.27647 5.29591 5.36816 5.39023 5.40495 5.54766 5.69213 5.74331 5.77934 5.78748 5.78837 5.83155 5.84531 5.98436 6.08314 6.14433 6.18839 6.31374 6.33694 6.45750 6.53905 6.64677 6.79628 6.86263 7.01323 7.19897 7.28397 7.54273 7.73339 7.95815 8.08764 8.38653 8.42506 8.96225 9.03040 9.58072 11.05329 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037189 B = 0.003340 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.737156 B = 8380.420771 C = 8505.939635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.099 4.099 4 H 0.073 0.927 5 C -0.147 4.147 6 C 0.166 3.834 7 H 0.084 0.916 8 C -0.166 4.166 9 N -0.747 5.747 10 C 0.705 3.295 11 O -0.601 6.601 12 N -0.619 5.619 13 C 0.127 3.873 14 C -0.124 4.124 15 C 0.051 3.949 16 C -0.514 4.514 17 H 0.053 0.947 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.278 1.278 24 C -0.124 4.124 25 C 0.114 3.886 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.392 0.608 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.103 0.897 41 H 0.037 0.963 42 H 0.027 0.973 43 H 0.261 0.739 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.659 -11.843 -0.600 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.118 4.118 4 H 0.092 0.908 5 C -0.204 4.204 6 C 0.060 3.940 7 H 0.102 0.898 8 C -0.225 4.225 9 N -0.405 5.405 10 C 0.407 3.593 11 O -0.481 6.481 12 N -0.355 5.355 13 C 0.005 3.995 14 C -0.162 4.162 15 C 0.032 3.968 16 C -0.552 4.552 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.162 4.162 25 C -0.009 4.009 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.229 0.771 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.925 -12.451 -0.948 20.237 hybrid contribution 0.275 1.078 0.888 1.424 sum -15.650 -11.373 -0.059 19.346 Atomic orbital electron populations 1.21817 0.95780 1.01497 1.01908 1.21604 0.95871 0.95691 1.02558 1.21451 0.94394 0.97037 0.98931 0.90837 1.21857 1.00945 1.00784 0.96863 1.20743 0.92481 0.82073 0.98674 0.89814 1.22271 1.02698 1.00145 0.97339 1.45374 1.13515 1.09084 1.72491 1.15876 0.81920 0.83310 0.78193 1.90853 1.54368 1.44494 1.58337 1.47449 1.18443 1.03559 1.66088 1.21658 0.81098 0.99805 0.96941 1.21942 1.01809 0.95661 0.96821 1.18606 0.89511 0.92708 0.95968 1.21149 1.03671 1.29079 1.01332 0.92849 1.24962 0.97447 0.96362 0.95185 1.69839 1.18516 1.44756 1.19770 0.86681 0.79126 0.80975 0.81338 1.20358 1.21303 1.20355 1.22008 0.99124 0.97629 0.97432 1.21687 0.92187 0.88713 0.98334 0.92790 0.92494 0.92858 0.91299 0.91739 0.92486 0.92487 0.92612 0.91778 0.92802 0.91817 0.77110 0.90598 0.92686 0.87887 0.94429 0.95517 0.92899 0.92234 0.92952 0.92042 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.12 -0.90 5.19 -26.73 -0.14 -1.04 16 3 C -0.10 -0.86 2.02 -90.63 -0.18 -1.04 16 4 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 5 C -0.15 -1.29 8.79 37.16 0.33 -0.96 16 6 C 0.17 1.95 2.12 -67.93 -0.14 1.81 16 7 H 0.08 1.15 7.65 -51.93 -0.40 0.75 16 8 C -0.17 -1.90 9.14 37.16 0.34 -1.56 16 9 N -0.75 -10.21 4.29 -58.67 -0.25 -10.47 16 10 C 0.71 12.85 8.26 -86.92 -0.72 12.13 16 11 O -0.60 -13.01 15.43 5.29 0.08 -12.93 16 12 N -0.62 -11.42 2.98 -178.76 -0.53 -11.96 16 13 C 0.13 2.62 6.41 -3.93 -0.03 2.59 16 14 C -0.12 -2.91 5.14 -26.83 -0.14 -3.05 16 15 C 0.05 1.21 2.07 -91.74 -0.19 1.02 16 16 C -0.51 -13.78 8.56 -34.44 -0.29 -14.07 16 17 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 18 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -24.93 11.31 55.43 0.63 -24.31 16 20 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 25 C 0.11 1.84 6.39 -3.71 -0.02 1.82 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.50 6.17 -51.93 -0.32 0.18 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 32 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.60 6.32 -51.93 -0.33 0.27 16 37 H 0.39 4.60 5.88 -40.82 -0.24 4.36 16 38 H 0.08 1.61 6.99 -51.93 -0.36 1.25 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.10 2.70 6.03 -51.93 -0.31 2.38 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -29.95 356.35 -9.15 -39.10 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -8.36 Total: 3.09 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -1.06 Total: -3.95 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.16 Total: -46.73 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.95 -9.15 -39.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543779991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.961 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds