Wall clock time and date at job start Tue Mar 31 2020 05:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47104 * 2 1 4 4 H 1.09002 * 109.47145 * 304.99937 * 3 2 1 5 5 C 1.53004 * 109.46925 * 64.99439 * 3 2 1 6 6 C 1.52997 * 109.47328 * 184.99763 * 3 2 1 7 7 H 1.09002 * 109.47150 * 300.00171 * 6 3 2 8 8 C 1.52994 * 109.46996 * 60.00013 * 6 3 2 9 9 N 1.46495 * 109.47246 * 179.97438 * 6 3 2 10 10 C 1.34778 * 120.00011 * 154.99786 * 9 6 3 11 11 O 1.21583 * 119.99863 * 4.97398 * 10 9 6 12 12 N 1.34784 * 119.99730 * 184.97650 * 10 9 6 13 13 C 1.46924 * 120.63339 * 354.48374 * 12 10 9 14 14 C 1.52760 * 109.00816 * 233.58536 * 13 12 10 15 15 C 1.53037 * 109.38493 * 305.59155 * 14 13 12 16 16 C 1.50697 * 109.45075 * 181.25706 * 15 14 13 17 17 H 1.08003 * 119.99752 * 239.94195 * 16 15 14 18 18 C 1.37873 * 120.00486 * 59.93179 * 16 15 14 19 19 N 1.31517 * 119.99724 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00557 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47019 * 89.99778 * 20 18 16 22 22 H 1.48496 * 109.47417 * 210.00521 * 20 18 16 23 23 H 1.48504 * 109.46760 * 330.00434 * 20 18 16 24 24 C 1.53040 * 109.53975 * 61.23605 * 15 14 13 25 25 C 1.46929 * 120.62516 * 174.76761 * 12 10 9 26 26 H 1.09001 * 109.47179 * 60.00691 * 1 2 3 27 27 H 1.09006 * 109.47003 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47918 * 300.00109 * 1 2 3 29 29 H 1.09004 * 109.47255 * 239.99946 * 2 1 3 30 30 H 1.09004 * 109.46947 * 119.99785 * 2 1 3 31 31 H 1.09006 * 109.46876 * 180.02562 * 5 3 2 32 32 H 1.08994 * 109.47160 * 300.00282 * 5 3 2 33 33 H 1.08999 * 109.47076 * 60.00737 * 5 3 2 34 34 H 1.09005 * 109.47547 * 300.00021 * 8 6 3 35 35 H 1.09004 * 109.47730 * 59.99826 * 8 6 3 36 36 H 1.09007 * 109.47066 * 180.02562 * 8 6 3 37 37 H 0.97007 * 120.00278 * 335.00421 * 9 6 3 38 38 H 1.09002 * 109.58218 * 353.42247 * 13 12 10 39 39 H 1.09001 * 109.58463 * 113.84307 * 13 12 10 40 40 H 1.09002 * 109.56444 * 185.55085 * 14 13 12 41 41 H 1.09005 * 109.38718 * 65.51763 * 14 13 12 42 42 H 1.09002 * 109.45915 * 301.21936 * 15 14 13 43 43 H 0.97004 * 120.00115 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.49471 * 178.68126 * 24 15 14 45 45 H 1.08999 * 109.52308 * 58.60870 * 24 15 14 46 46 H 1.09000 * 109.58488 * 246.15385 * 25 12 10 47 47 H 1.08996 * 109.58624 * 6.43279 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6350 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 1 3.9994 0.9054 0.7162 8 6 3.9696 0.7604 -1.4329 9 7 4.0530 2.8256 -0.1263 10 6 5.3117 3.0956 0.2729 11 8 6.0707 2.1862 0.5470 12 7 5.7289 4.3737 0.3682 13 6 4.8659 5.4778 -0.0734 14 6 5.6371 6.3454 -1.0664 15 6 6.9561 6.7930 -0.4324 16 6 7.7039 7.6744 -1.3992 17 1 8.6872 7.3875 -1.7419 18 6 7.1330 8.8469 -1.8465 19 7 5.9359 9.1965 -1.4291 20 14 8.0598 9.9391 -3.0456 21 1 7.7295 9.5386 -4.4368 22 1 7.6662 11.3549 -2.8313 23 1 9.5204 9.7921 -2.8216 24 6 7.8065 5.5650 -0.0992 25 6 7.0578 4.6889 0.9100 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9980 3.1544 1.3071 32 1 0.5488 2.1252 1.3968 33 1 2.0697 1.5876 2.1492 34 1 3.6063 -0.2673 -1.4330 35 1 3.5349 1.2993 -2.2749 36 1 5.0560 0.7613 -1.5223 37 1 3.4704 3.5459 -0.4139 38 1 3.9757 5.0749 -0.5565 39 1 4.5759 6.0813 0.7867 40 1 5.0419 7.2213 -1.3248 41 1 5.8440 5.7676 -1.9672 42 1 6.7491 7.3501 0.4814 43 1 5.5343 10.0216 -1.7435 44 1 8.7554 5.8855 0.3308 45 1 7.9936 4.9939 -1.0085 46 1 6.9502 5.2268 1.8519 47 1 7.6123 3.7656 1.0778 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543779992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:44 Heat of formation + Delta-G solvation = -54.811833 kcal Electronic energy + Delta-G solvation = -23378.339415 eV Core-core repulsion = 20174.128480 eV Total energy + Delta-G solvation = -3204.210935 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.08509 -37.99733 -36.57980 -33.94745 -33.42920 -31.41598 -30.17067 -29.63107 -29.46427 -26.09365 -24.60541 -23.40668 -22.50425 -21.95371 -20.24156 -20.01067 -18.73308 -17.58680 -16.26969 -16.12937 -15.22740 -15.00750 -14.78852 -14.51101 -14.27401 -13.75492 -13.47733 -13.38240 -13.09406 -12.85309 -12.65618 -12.56065 -12.34309 -12.17872 -11.91709 -11.73732 -11.56105 -11.37449 -11.29782 -10.94652 -10.88565 -10.69559 -10.63656 -10.53389 -10.35407 -10.13440 -9.69454 -9.50876 -9.13879 -8.93837 -8.83477 -8.37329 -7.85076 -6.03105 -4.08876 3.07856 3.28139 3.35164 3.38863 3.63011 4.27044 4.41078 4.52381 4.68434 4.77281 5.08676 5.25985 5.26308 5.30394 5.40366 5.42949 5.54171 5.59628 5.72351 5.76908 5.80113 5.80728 5.82154 5.87536 5.95596 6.02264 6.09890 6.17744 6.19300 6.22837 6.32133 6.35699 6.50633 6.70740 6.81567 6.91779 7.02524 7.17478 7.25075 7.51188 7.67796 7.93445 8.03996 8.38363 8.41766 8.94577 9.02680 9.56123 11.02336 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026980 B = 0.003609 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.561277 B = 7757.584682 C = 8167.752756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.100 4.100 4 H 0.074 0.926 5 C -0.147 4.147 6 C 0.166 3.834 7 H 0.083 0.917 8 C -0.166 4.166 9 N -0.745 5.745 10 C 0.706 3.294 11 O -0.605 6.605 12 N -0.619 5.619 13 C 0.112 3.888 14 C -0.124 4.124 15 C 0.050 3.950 16 C -0.510 4.510 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.124 4.124 25 C 0.130 3.870 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.394 0.606 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.037 0.963 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.904 -13.921 3.152 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.119 4.119 4 H 0.092 0.908 5 C -0.205 4.205 6 C 0.061 3.939 7 H 0.101 0.899 8 C -0.225 4.225 9 N -0.403 5.403 10 C 0.408 3.592 11 O -0.486 6.486 12 N -0.356 5.356 13 C -0.011 4.011 14 C -0.163 4.163 15 C 0.031 3.969 16 C -0.549 4.549 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.162 4.162 25 C 0.007 3.993 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.231 0.769 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.475 -14.417 3.363 18.135 hybrid contribution 0.121 1.139 -0.958 1.493 sum -10.354 -13.278 2.405 17.009 Atomic orbital electron populations 1.21814 0.95775 1.01471 1.01955 1.21601 0.95886 0.95689 1.02501 1.21458 0.94381 0.97030 0.99014 0.90764 1.21859 1.00979 1.00833 0.96790 1.20737 0.92524 0.82052 0.98618 0.89861 1.22272 1.02630 1.00141 0.97415 1.45372 1.13500 1.09156 1.72283 1.15857 0.81984 0.83232 0.78116 1.90837 1.54449 1.44603 1.58664 1.47415 1.18300 1.04005 1.65862 1.21777 0.92347 0.88145 0.98807 1.21938 0.99866 0.98638 0.95813 1.18611 0.91236 0.90790 0.96227 1.21224 1.02444 1.04891 1.26294 0.92721 1.24958 0.95010 0.97597 0.96438 1.69838 1.14942 1.23845 1.44545 0.86618 0.80273 0.79812 0.81442 1.20775 1.21269 1.19961 1.22015 0.98726 0.97841 0.97640 1.21548 0.82012 0.99563 0.96179 0.92760 0.92880 0.92484 0.91315 0.91777 0.92419 0.92464 0.92664 0.91833 0.92730 0.91835 0.76879 0.92620 0.92147 0.87858 0.94373 0.95480 0.93033 0.92224 0.93012 0.92584 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.67 37.16 0.36 -0.70 16 2 C -0.12 -0.93 5.19 -26.73 -0.14 -1.07 16 3 C -0.10 -0.92 2.02 -90.62 -0.18 -1.10 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.15 -1.36 8.79 37.16 0.33 -1.04 16 6 C 0.17 2.01 2.12 -67.94 -0.14 1.87 16 7 H 0.08 1.15 7.65 -51.93 -0.40 0.76 16 8 C -0.17 -1.95 9.14 37.15 0.34 -1.61 16 9 N -0.75 -10.59 4.29 -58.68 -0.25 -10.84 16 10 C 0.71 12.87 8.26 -86.91 -0.72 12.16 16 11 O -0.61 -12.81 15.43 5.29 0.08 -12.73 16 12 N -0.62 -11.43 2.98 -178.76 -0.53 -11.96 16 13 C 0.11 2.00 6.36 -3.93 -0.03 1.97 16 14 C -0.12 -2.73 5.14 -26.84 -0.14 -2.87 16 15 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 16 C -0.51 -13.65 8.56 -34.44 -0.29 -13.94 16 17 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 19 N -0.89 -24.38 11.31 55.43 0.63 -23.75 16 20 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.12 -2.59 5.30 -26.61 -0.14 -2.73 16 25 C 0.13 2.45 6.44 -3.71 -0.02 2.42 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 29 H 0.07 0.52 6.17 -51.93 -0.32 0.20 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 32 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.61 6.32 -51.93 -0.33 0.28 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.39 5.03 5.88 -40.82 -0.24 4.79 16 38 H 0.06 0.84 5.65 -51.93 -0.29 0.55 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -29.28 356.35 -9.15 -38.43 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -8.36 Total: 3.71 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.06 Total: -4.10 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.16 Total: -46.56 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.28 -9.15 -38.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543779992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.382 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds