Wall clock time and date at job start Tue Mar 31 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47146 * 2 1 4 4 H 1.09004 * 109.47373 * 306.41031 * 3 2 1 5 5 C 1.50710 * 109.46804 * 186.41429 * 3 2 1 6 6 H 1.08002 * 119.99741 * 239.99868 * 5 3 2 7 7 C 1.37877 * 119.99722 * 60.00170 * 5 3 2 8 8 N 1.31511 * 120.00437 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99583 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47266 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47135 * 119.99936 * 9 7 5 12 12 H 1.48502 * 109.47356 * 239.99851 * 9 7 5 13 13 N 1.46896 * 109.47211 * 66.41739 * 3 2 1 14 14 C 1.46906 * 110.99934 * 208.29290 * 13 3 2 15 15 H 1.08998 * 109.46801 * 32.41179 * 14 13 3 16 16 C 1.53002 * 109.46895 * 272.41238 * 14 13 3 17 17 C 1.50699 * 109.47114 * 152.41197 * 14 13 3 18 18 O 1.21282 * 120.00089 * 16.60301 * 17 14 13 19 19 N 1.34777 * 119.99803 * 196.33004 * 17 14 13 20 20 C 1.46929 * 120.62813 * 174.80229 * 19 17 14 21 21 C 1.52765 * 109.00355 * 233.58681 * 20 19 17 22 22 C 1.53042 * 109.38454 * 305.58513 * 21 20 19 23 23 C 1.53002 * 109.44873 * 181.25814 * 22 21 20 24 24 C 1.53043 * 109.53607 * 61.24386 * 22 21 20 25 25 C 1.46925 * 120.63282 * 355.08569 * 19 17 14 26 26 H 1.09001 * 109.46981 * 304.65965 * 1 2 3 27 27 H 1.09001 * 109.47562 * 64.65817 * 1 2 3 28 28 H 1.09002 * 109.47650 * 184.66367 * 1 2 3 29 29 H 1.09005 * 109.46597 * 240.00013 * 2 1 3 30 30 H 1.08995 * 109.47036 * 120.00479 * 2 1 3 31 31 H 0.96998 * 120.00212 * 180.02562 * 8 7 5 32 32 H 1.00903 * 111.00082 * 84.34223 * 13 3 2 33 33 H 1.08993 * 109.47111 * 305.32146 * 16 14 13 34 34 H 1.09000 * 109.47467 * 65.32614 * 16 14 13 35 35 H 1.08999 * 109.47027 * 185.32586 * 16 14 13 36 36 H 1.08997 * 109.58583 * 353.41772 * 20 19 17 37 37 H 1.08998 * 109.58658 * 113.84685 * 20 19 17 38 38 H 1.09003 * 109.55795 * 185.55741 * 21 20 19 39 39 H 1.08998 * 109.36200 * 65.50386 * 21 20 19 40 40 H 1.09005 * 109.45953 * 301.22507 * 22 21 20 41 41 H 1.09003 * 109.47022 * 299.93851 * 23 22 21 42 42 H 1.08995 * 109.46876 * 59.93911 * 23 22 21 43 43 H 1.09000 * 109.46922 * 179.97438 * 23 22 21 44 44 H 1.08999 * 109.49906 * 178.67756 * 24 22 21 45 45 H 1.09001 * 109.52093 * 58.60104 * 24 22 21 46 46 H 1.09000 * 109.58369 * 246.15634 * 25 19 17 47 47 H 1.08998 * 109.58358 * 6.43754 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5860 1.9884 -0.8271 5 6 3.5387 1.4453 -0.1587 6 1 4.1619 1.8835 0.6068 7 6 4.1140 0.8885 -1.2812 8 7 3.3552 0.3545 -2.2131 9 14 5.9716 0.8927 -1.4783 10 1 6.5930 1.5479 -0.2994 11 1 6.4615 -0.5053 -1.5824 12 1 6.3372 1.6383 -2.7095 13 7 1.6808 2.0888 1.2693 14 6 1.5218 3.5388 1.0951 15 1 1.1396 3.7449 0.0954 16 6 2.8771 4.2257 1.2748 17 6 0.5521 4.0647 2.1219 18 8 0.2757 3.3945 3.0942 19 7 -0.0038 5.2821 1.9624 20 6 -1.0351 5.7617 2.8925 21 6 -2.2635 6.1935 2.0936 22 6 -1.8468 7.2167 1.0346 23 6 -3.0810 7.6737 0.2542 24 6 -0.8430 6.5774 0.0724 25 6 0.4055 6.1522 0.8516 26 1 -0.3633 0.5844 0.8453 27 1 -0.3634 0.4399 -0.9288 28 1 -0.3634 -1.0242 0.0836 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.7600 -0.0375 -3.0026 32 1 2.3615 1.8831 1.9851 33 1 3.3028 3.9431 2.2375 34 1 3.5501 3.9164 0.4750 35 1 2.7439 5.3069 1.2397 36 1 -1.3101 4.9602 3.5782 37 1 -0.6517 6.6122 3.4562 38 1 -2.9960 6.6423 2.7647 39 1 -2.7017 5.3228 1.6058 40 1 -1.3862 8.0763 1.5216 41 1 -3.5414 6.8143 -0.2332 42 1 -3.7960 8.1290 0.9394 43 1 -2.7846 8.4028 -0.4998 44 1 -0.5645 7.2993 -0.6954 45 1 -1.2942 5.7032 -0.3969 46 1 0.9088 7.0352 1.2455 47 1 1.0828 5.6091 0.1924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563365470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:55 Heat of formation + Delta-G solvation = -54.625924 kcal Electronic energy + Delta-G solvation = -23773.189662 eV Core-core repulsion = 20568.986789 eV Total energy + Delta-G solvation = -3204.202873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.06635 -37.69927 -36.15379 -33.91483 -33.07621 -31.55118 -31.01674 -28.75956 -28.01121 -26.14836 -24.23209 -23.34855 -22.75562 -22.02937 -20.26262 -19.59172 -18.68629 -16.90194 -16.34034 -15.74470 -15.07568 -14.84997 -14.69007 -14.40067 -14.00885 -13.75667 -13.66935 -13.28696 -13.00416 -12.87308 -12.51037 -12.36247 -11.99043 -11.91601 -11.82512 -11.72314 -11.35468 -11.27196 -11.10929 -11.01991 -10.85195 -10.82108 -10.66282 -10.52815 -10.46642 -10.12888 -9.71378 -9.51028 -9.17661 -8.89249 -8.42651 -8.38298 -7.24637 -6.01320 -4.14186 3.13140 3.23107 3.24301 3.33554 3.36197 4.37444 4.58602 4.60105 4.68782 4.94916 5.08391 5.21384 5.22205 5.33877 5.38036 5.42008 5.49649 5.53008 5.61357 5.68289 5.72219 5.80390 5.80445 5.88074 5.98899 6.01685 6.03347 6.15073 6.29564 6.38026 6.44374 6.58099 6.72415 6.76134 6.78285 7.12212 7.24330 7.44416 7.57028 7.69784 7.78379 8.09358 8.13176 8.31880 8.63014 8.70720 8.99044 9.53284 10.98559 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.004399 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.331575 B = 6363.366307 C = 6597.725490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.031 0.969 5 C -0.543 4.543 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.668 5.668 14 C 0.081 3.919 15 H 0.091 0.909 16 C -0.175 4.175 17 C 0.523 3.477 18 O -0.528 6.528 19 N -0.621 5.621 20 C 0.113 3.887 21 C -0.129 4.129 22 C -0.092 4.092 23 C -0.146 4.146 24 C -0.132 4.132 25 C 0.106 3.894 26 H 0.050 0.950 27 H 0.034 0.966 28 H 0.025 0.975 29 H 0.091 0.909 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.338 0.662 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.616 14.491 3.976 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C 0.110 3.890 4 H 0.049 0.951 5 C -0.582 4.582 6 H 0.076 0.924 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.298 5.298 14 C -0.033 4.033 15 H 0.109 0.891 16 C -0.234 4.234 17 C 0.311 3.689 18 O -0.403 6.403 19 N -0.357 5.357 20 C -0.010 4.010 21 C -0.168 4.168 22 C -0.110 4.110 23 C -0.204 4.204 24 C -0.171 4.171 25 C -0.018 4.018 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.109 0.891 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.156 0.844 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.425 13.853 4.266 17.290 hybrid contribution 1.950 0.352 -0.421 2.026 sum -7.475 14.206 3.844 16.506 Atomic orbital electron populations 1.21719 0.99081 0.98596 1.00267 1.21488 0.92124 0.99122 1.01658 1.19238 0.93223 0.91480 0.85089 0.95141 1.21948 0.92669 1.38591 1.05034 0.92384 1.24930 0.97707 0.94954 0.95874 1.69889 1.34557 1.38515 1.09230 0.86632 0.86168 0.77815 0.77925 1.19888 1.20990 1.21107 1.60549 1.53501 1.04424 1.11291 1.21325 0.93343 0.91937 0.96713 0.89110 1.22562 0.97939 0.99317 1.03590 1.21259 0.80963 0.79385 0.87245 1.90611 1.61759 1.56870 1.31044 1.48169 1.40917 1.17108 1.29522 1.21373 0.87760 0.99678 0.92191 1.21914 0.97567 0.99275 0.98004 1.21112 0.95996 0.97831 0.96071 1.21827 0.97454 1.01138 0.99960 1.22012 0.95955 1.01181 0.97907 1.21793 0.96717 0.94484 0.88777 0.93070 0.94708 0.95631 0.89103 0.94995 0.92941 0.84423 0.92721 0.89363 0.93382 0.89246 0.92310 0.91105 0.91449 0.91236 0.92622 0.92820 0.92713 0.90833 0.91186 0.91773 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.86 37.16 0.37 -2.64 16 2 C -0.11 -2.56 5.45 -26.74 -0.15 -2.70 16 3 C 0.22 5.25 1.97 -68.87 -0.14 5.11 16 4 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 5 C -0.54 -13.95 7.23 -34.44 -0.25 -14.20 16 6 H 0.06 1.48 6.89 -52.49 -0.36 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.26 11.29 55.43 0.63 -23.64 16 9 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.67 -14.46 5.04 -102.17 -0.52 -14.97 16 14 C 0.08 1.50 2.15 -68.86 -0.15 1.36 16 15 H 0.09 1.68 6.22 -51.93 -0.32 1.36 16 16 C -0.18 -2.93 8.32 37.16 0.31 -2.63 16 17 C 0.52 9.43 6.98 -10.99 -0.08 9.35 16 18 O -0.53 -11.35 15.96 5.56 0.09 -11.26 16 19 N -0.62 -8.74 2.98 -173.03 -0.52 -9.25 16 20 C 0.11 1.38 6.39 -3.93 -0.03 1.35 16 21 C -0.13 -1.29 5.34 -26.83 -0.14 -1.44 16 22 C -0.09 -0.81 2.68 -90.58 -0.24 -1.05 16 23 C -0.15 -1.14 9.19 37.16 0.34 -0.79 16 24 C -0.13 -1.29 5.36 -26.61 -0.14 -1.44 16 25 C 0.11 1.19 5.36 -3.71 -0.02 1.17 16 26 H 0.05 1.12 7.68 -51.93 -0.40 0.72 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 2.42 5.92 -51.93 -0.31 2.12 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.34 7.51 7.97 -39.29 -0.31 7.20 16 33 H 0.05 0.93 8.02 -51.93 -0.42 0.52 16 34 H 0.09 1.65 6.49 -51.93 -0.34 1.31 16 35 H 0.05 0.66 6.41 -51.93 -0.33 0.33 16 36 H 0.09 1.26 7.04 -51.93 -0.37 0.90 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.11 4.85 -51.93 -0.25 0.86 16 LS Contribution 356.69 15.07 5.38 5.38 Total: -1.00 -28.93 356.69 -8.79 -37.72 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -8.42 Total: 7.39 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -0.41 Total: -6.85 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.40 Total: -47.86 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.93 -8.79 -37.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563365470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.911 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds