Wall clock time and date at job start Tue Mar 31 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47019 * 2 1 4 4 H 1.09009 * 109.46870 * 54.47965 * 3 2 1 5 5 C 1.50693 * 109.47008 * 174.47851 * 3 2 1 6 6 H 1.08001 * 120.00174 * 120.00593 * 5 3 2 7 7 C 1.37880 * 120.00253 * 299.99980 * 5 3 2 8 8 N 1.31508 * 119.99657 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99877 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46999 * 60.00379 * 9 7 5 11 11 H 1.48502 * 109.46702 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47236 * 300.00377 * 9 7 5 13 13 N 1.46902 * 109.47330 * 294.48413 * 3 2 1 14 14 C 1.46899 * 111.00154 * 153.87375 * 13 3 2 15 15 H 1.09003 * 109.47030 * 33.44969 * 14 13 3 16 16 C 1.53001 * 109.47100 * 273.45314 * 14 13 3 17 17 C 1.50698 * 109.46985 * 153.44843 * 14 13 3 18 18 O 1.21277 * 120.00372 * 19.75502 * 17 14 13 19 19 N 1.34781 * 119.99762 * 199.75018 * 17 14 13 20 20 C 1.46925 * 120.63111 * 4.12835 * 19 17 14 21 21 C 1.52760 * 109.01128 * 233.58338 * 20 19 17 22 22 C 1.53033 * 109.38300 * 305.59334 * 21 20 19 23 23 C 1.52999 * 109.44764 * 181.25284 * 22 21 20 24 24 C 1.53040 * 109.54064 * 61.23863 * 22 21 20 25 25 C 1.46927 * 120.62742 * 184.41296 * 19 17 14 26 26 H 1.09000 * 109.47511 * 65.58882 * 1 2 3 27 27 H 1.09000 * 109.47013 * 185.59114 * 1 2 3 28 28 H 1.08997 * 109.47174 * 305.58707 * 1 2 3 29 29 H 1.08997 * 109.46674 * 240.00528 * 2 1 3 30 30 H 1.08998 * 109.47040 * 120.00425 * 2 1 3 31 31 H 0.97003 * 119.99881 * 179.97438 * 8 7 5 32 32 H 1.00895 * 111.00046 * 29.91715 * 13 3 2 33 33 H 1.08994 * 109.47237 * 66.28384 * 16 14 13 34 34 H 1.09000 * 109.47026 * 186.29266 * 16 14 13 35 35 H 1.09001 * 109.46652 * 306.28844 * 16 14 13 36 36 H 1.08996 * 109.58887 * 353.42751 * 20 19 17 37 37 H 1.09003 * 109.57914 * 113.84454 * 20 19 17 38 38 H 1.09000 * 109.56331 * 185.55359 * 21 20 19 39 39 H 1.09004 * 109.35665 * 65.50358 * 21 20 19 40 40 H 1.09004 * 109.46050 * 301.21637 * 22 21 20 41 41 H 1.09004 * 109.47503 * 299.93786 * 23 22 21 42 42 H 1.08999 * 109.47512 * 59.93679 * 23 22 21 43 43 H 1.09004 * 109.47403 * 179.97438 * 23 22 21 44 44 H 1.09005 * 109.49655 * 178.68395 * 24 22 21 45 45 H 1.09004 * 109.52381 * 58.60112 * 24 22 21 46 46 H 1.08997 * 109.58865 * 246.15482 * 25 19 17 47 47 H 1.08997 * 109.58952 * 6.44427 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9841 0.8365 5 6 3.5407 1.4447 0.1367 6 1 4.1527 1.8870 -0.6355 7 6 4.1327 0.8821 1.2477 8 7 3.3875 0.3432 2.1878 9 14 5.9930 0.8843 1.4167 10 1 6.4884 2.2842 1.4164 11 1 6.3750 0.2238 2.6907 12 1 6.5945 0.1461 0.2771 13 7 1.6621 2.0955 -1.2604 14 6 1.5558 3.5505 -1.0883 15 1 2.2892 3.8841 -0.3542 16 6 0.1493 3.9051 -0.6014 17 6 1.8181 4.2327 -2.4062 18 8 1.7142 3.6109 -3.4422 19 7 2.1680 5.5340 -2.4335 20 6 2.3857 6.2770 -1.1848 21 6 1.5208 7.5361 -1.1977 22 6 1.8126 8.3398 -2.4668 23 6 0.9699 9.6168 -2.4661 24 6 1.4631 7.4990 -3.6969 25 6 2.3329 6.2381 -3.7125 26 1 -0.3634 0.4247 -0.9358 27 1 -0.3633 -1.0228 0.1001 28 1 -0.3633 0.5980 0.8357 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8039 -0.0529 2.9692 32 1 0.8030 1.7107 -1.6237 33 1 0.0002 3.5044 0.4012 34 1 0.0345 4.9888 -0.5805 35 1 -0.5887 3.4745 -1.2782 36 1 2.1081 5.6532 -0.3352 37 1 3.4357 6.5591 -1.1059 38 1 1.7479 8.1438 -0.3218 39 1 0.4686 7.2517 -1.1809 40 1 2.8701 8.6026 -2.4951 41 1 -0.0877 9.3543 -2.4383 42 1 1.2187 10.2159 -1.5901 43 1 1.1778 10.1899 -3.3697 44 1 1.6491 8.0806 -4.5999 45 1 0.4114 7.2151 -3.6572 46 1 3.3784 6.5170 -3.8439 47 1 2.0226 5.5878 -4.5303 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563365473.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:59 Heat of formation + Delta-G solvation = -52.461488 kcal Electronic energy + Delta-G solvation = -23756.009615 eV Core-core repulsion = 20551.900599 eV Total energy + Delta-G solvation = -3204.109016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.05488 -37.71380 -36.25387 -33.87907 -33.12056 -31.60611 -30.99011 -28.76079 -28.15986 -26.09193 -24.38986 -23.34554 -22.92187 -21.98813 -20.36857 -19.62887 -18.50566 -16.80331 -16.14438 -15.81359 -15.04229 -14.92611 -14.67584 -14.41493 -14.08926 -13.96070 -13.60933 -13.31856 -13.19434 -12.84077 -12.60758 -12.43521 -12.20251 -12.01869 -11.79376 -11.74156 -11.65147 -11.28894 -11.12419 -11.02170 -10.88704 -10.83174 -10.64186 -10.52108 -10.46685 -9.93991 -9.87437 -9.62323 -9.12740 -8.98978 -8.38703 -8.33846 -7.17958 -5.95995 -4.00188 3.16929 3.24949 3.34561 3.38872 3.43439 4.45672 4.57633 4.59228 4.68104 4.94383 5.08647 5.23894 5.27180 5.32942 5.34127 5.39000 5.48005 5.51307 5.55114 5.64544 5.67428 5.77955 5.81889 5.87917 5.92498 5.98874 6.01059 6.08209 6.19182 6.20060 6.24433 6.27276 6.42316 6.45399 6.77130 6.87588 7.08977 7.18478 7.47127 7.71667 7.80102 7.93761 8.29391 8.40720 8.71706 8.77558 9.08152 9.65007 11.08949 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.004725 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.538396 B = 5924.550041 C = 6595.587028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.495 4.495 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.666 5.666 14 C 0.076 3.924 15 H 0.104 0.896 16 C -0.173 4.173 17 C 0.528 3.472 18 O -0.530 6.530 19 N -0.620 5.620 20 C 0.105 3.895 21 C -0.130 4.130 22 C -0.093 4.093 23 C -0.146 4.146 24 C -0.127 4.127 25 C 0.112 3.888 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.260 0.740 32 H 0.327 0.673 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 15.807 -5.400 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.534 4.534 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.297 5.297 14 C -0.039 4.039 15 H 0.121 0.879 16 C -0.232 4.232 17 C 0.316 3.684 18 O -0.404 6.404 19 N -0.356 5.356 20 C -0.019 4.019 21 C -0.168 4.168 22 C -0.111 4.111 23 C -0.203 4.203 24 C -0.166 4.166 25 C -0.011 4.011 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.202 15.344 -6.020 17.284 hybrid contribution 0.236 0.145 0.729 0.780 sum -4.965 15.489 -5.290 17.104 Atomic orbital electron populations 1.21885 0.99574 0.99756 0.99537 1.21767 0.91268 1.00232 1.03185 1.19209 0.95393 0.90064 0.83934 0.97781 1.21203 0.91304 1.36698 1.04157 0.92211 1.24934 0.98006 0.95581 0.95830 1.69859 1.34735 1.39376 1.09608 0.86627 0.85897 0.78123 0.77128 1.20475 1.21456 1.20299 1.60369 1.37727 0.99334 1.32314 1.21381 0.96985 0.92232 0.93263 0.87853 1.22449 0.97093 1.01401 1.02301 1.21077 0.74863 0.80315 0.92111 1.90605 1.51010 1.63558 1.35249 1.48129 1.70644 1.10303 1.06486 1.21683 0.99635 0.93362 0.87176 1.21931 1.00664 0.96348 0.97875 1.21122 1.00184 0.94878 0.94956 1.21824 0.99996 0.96973 1.01520 1.21975 1.00501 0.96145 0.97943 1.21469 0.99087 0.93297 0.87251 0.94558 0.94365 0.93909 0.93929 0.88153 0.93037 0.85454 0.91286 0.92576 0.92513 0.88989 0.91541 0.90774 0.91501 0.91064 0.92774 0.92697 0.92808 0.91127 0.91663 0.92106 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.65 37.16 0.36 -2.56 16 2 C -0.13 -2.99 5.35 -26.73 -0.14 -3.13 16 3 C 0.22 5.43 1.83 -68.87 -0.13 5.30 16 4 H 0.00 0.12 7.29 -51.92 -0.38 -0.26 16 5 C -0.49 -13.60 8.56 -34.44 -0.29 -13.90 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.56 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -25.05 11.29 55.43 0.63 -24.43 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.67 -14.75 5.62 -102.17 -0.57 -15.33 16 14 C 0.08 1.43 1.93 -68.87 -0.13 1.29 16 15 H 0.10 2.04 6.13 -51.93 -0.32 1.72 16 16 C -0.17 -2.68 8.88 37.16 0.33 -2.35 16 17 C 0.53 9.87 6.94 -10.98 -0.08 9.79 16 18 O -0.53 -11.72 15.98 5.56 0.09 -11.63 16 19 N -0.62 -9.12 2.98 -173.03 -0.52 -9.64 16 20 C 0.10 1.26 5.79 -3.93 -0.02 1.24 16 21 C -0.13 -1.22 5.34 -26.84 -0.14 -1.37 16 22 C -0.09 -0.81 2.68 -90.58 -0.24 -1.05 16 23 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 24 C -0.13 -1.24 5.36 -26.61 -0.14 -1.39 16 25 C 0.11 1.42 6.42 -3.71 -0.02 1.39 16 26 H 0.04 0.65 6.64 -51.93 -0.35 0.30 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.10 2.64 5.94 -51.93 -0.31 2.34 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 32 H 0.33 6.92 6.21 -39.29 -0.24 6.68 16 33 H 0.07 1.10 7.64 -51.93 -0.40 0.70 16 34 H 0.06 0.73 7.21 -51.93 -0.37 0.35 16 35 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 36 H 0.09 1.16 5.02 -51.93 -0.26 0.90 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.09 1.29 7.03 -51.93 -0.37 0.92 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -30.43 358.97 -8.84 -39.27 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -8.44 Total: 5.89 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -0.41 Total: -5.99 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.46 Total: -49.39 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.43 -8.84 -39.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563365473.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.187 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds