Wall clock time and date at job start Tue Mar 31 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47136 * 2 1 4 4 H 1.08998 * 109.46994 * 305.90613 * 3 2 1 5 5 C 1.50698 * 109.47245 * 185.89966 * 3 2 1 6 6 H 1.08000 * 120.00137 * 245.25907 * 5 3 2 7 7 C 1.37878 * 119.99573 * 65.26279 * 5 3 2 8 8 N 1.31518 * 119.99686 * 194.47325 * 7 5 3 9 9 Si 1.86800 * 120.00368 * 14.46981 * 7 5 3 10 10 H 1.48490 * 109.47155 * 94.18173 * 9 7 5 11 11 H 1.48500 * 109.46684 * 214.18226 * 9 7 5 12 12 H 1.48500 * 109.46912 * 334.17840 * 9 7 5 13 13 N 1.46908 * 109.46975 * 65.89957 * 3 2 1 14 14 C 1.46901 * 110.99750 * 201.49953 * 13 3 2 15 15 H 1.08997 * 109.47628 * 322.17372 * 14 13 3 16 16 C 1.53003 * 109.46955 * 82.17335 * 14 13 3 17 17 C 1.50701 * 109.47161 * 202.17231 * 14 13 3 18 18 O 1.21285 * 119.99459 * 352.32000 * 17 14 13 19 19 N 1.34773 * 120.00023 * 172.31999 * 17 14 13 20 20 C 1.46927 * 120.63253 * 5.11269 * 19 17 14 21 21 C 1.52754 * 109.00800 * 233.58454 * 20 19 17 22 22 C 1.53042 * 109.38583 * 305.58752 * 21 20 19 23 23 C 1.52998 * 109.45274 * 181.25444 * 22 21 20 24 24 C 1.53035 * 109.53810 * 61.23902 * 22 21 20 25 25 C 1.46924 * 120.62755 * 185.39320 * 19 17 14 26 26 H 1.09004 * 109.46599 * 184.32819 * 1 2 3 27 27 H 1.08997 * 109.47145 * 304.32510 * 1 2 3 28 28 H 1.08995 * 109.46978 * 64.33444 * 1 2 3 29 29 H 1.08996 * 109.46986 * 239.99841 * 2 1 3 30 30 H 1.09003 * 109.47103 * 120.00107 * 2 1 3 31 31 H 0.96999 * 120.00269 * 180.02562 * 8 7 5 32 32 H 1.00898 * 110.99733 * 325.45400 * 13 3 2 33 33 H 1.08993 * 109.47042 * 64.65007 * 16 14 13 34 34 H 1.09004 * 109.46787 * 184.64842 * 16 14 13 35 35 H 1.08995 * 109.47091 * 304.64296 * 16 14 13 36 36 H 1.09000 * 109.58282 * 353.42009 * 20 19 17 37 37 H 1.09000 * 109.58449 * 113.84150 * 20 19 17 38 38 H 1.09000 * 109.56629 * 185.55094 * 21 20 19 39 39 H 1.09003 * 109.36426 * 65.49702 * 21 20 19 40 40 H 1.09000 * 109.45781 * 301.21916 * 22 21 20 41 41 H 1.08999 * 109.47107 * 299.94270 * 23 22 21 42 42 H 1.09006 * 109.47223 * 59.93458 * 23 22 21 43 43 H 1.08994 * 109.47649 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.50394 * 178.68558 * 24 22 21 45 45 H 1.09006 * 109.52455 * 58.60535 * 24 22 21 46 46 H 1.09006 * 109.58612 * 246.15276 * 25 19 17 47 47 H 1.08992 * 109.59296 * 6.43707 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5929 1.9859 -0.8324 5 6 3.5399 1.4450 -0.1460 6 1 4.1604 1.8080 0.6600 7 6 4.1200 0.9839 -1.3088 8 7 5.4074 0.7166 -1.3401 9 14 3.0776 0.7389 -2.8394 10 1 3.1473 1.9568 -3.6859 11 1 3.5891 -0.4262 -3.6051 12 1 1.6680 0.4909 -2.4437 13 7 1.6700 2.0926 1.2643 14 6 1.6696 3.5549 1.1239 15 1 2.4953 3.8584 0.4803 16 6 0.3463 4.0073 0.5032 17 6 1.8310 4.1900 2.4810 18 8 1.7962 3.5030 3.4799 19 7 2.0140 5.5212 2.5846 20 6 1.9472 6.3809 1.3950 21 6 3.2240 7.2153 1.3118 22 6 3.4212 7.9744 2.6260 23 6 4.6828 8.8350 2.5329 24 6 3.5687 6.9762 3.7765 25 6 2.2902 6.1396 3.8884 26 1 -0.3633 -1.0248 0.0776 27 1 -0.3633 0.5795 0.8487 28 1 -0.3633 0.4451 -0.9262 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 5.8157 0.3926 -2.1582 32 1 0.7758 1.7607 1.5934 33 1 -0.4722 3.7775 1.1853 34 1 0.3782 5.0818 0.3228 35 1 0.1904 3.4849 -0.4406 36 1 1.8576 5.7624 0.5019 37 1 1.0851 7.0436 1.4710 38 1 3.1424 7.9264 0.4897 39 1 4.0756 6.5568 1.1407 40 1 2.5579 8.6143 2.8088 41 1 5.5463 8.1952 2.3505 42 1 4.5780 9.5461 1.7134 43 1 4.8234 9.3761 3.4685 44 1 3.7324 7.5168 4.7087 45 1 4.4171 6.3198 3.5828 46 1 1.4567 6.7823 4.1720 47 1 2.4244 5.3622 4.6405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563365474.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:02 Heat of formation + Delta-G solvation = -41.948655 kcal Electronic energy + Delta-G solvation = -23862.520804 eV Core-core repulsion = 20658.867659 eV Total energy + Delta-G solvation = -3203.653145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.11040 -37.75169 -36.47282 -33.98484 -33.10508 -31.92036 -31.05676 -28.91238 -28.13673 -26.65953 -24.45840 -23.29839 -22.76463 -22.00865 -20.31151 -19.67397 -18.76826 -16.75424 -16.71249 -15.90970 -15.17207 -14.86780 -14.63924 -14.42140 -14.22917 -14.03081 -13.68515 -13.27164 -13.25866 -13.13993 -12.76371 -12.38439 -12.15748 -12.13662 -11.89642 -11.88377 -11.81040 -11.60974 -11.23937 -11.00538 -10.92874 -10.86851 -10.54478 -10.44658 -10.43015 -10.26595 -10.01013 -9.56323 -9.17253 -9.09726 -8.47893 -8.41452 -7.31085 -6.05552 -3.98721 3.10799 3.23303 3.25631 3.36340 3.37610 4.42489 4.61891 4.63703 4.72308 4.91921 5.05455 5.12013 5.22540 5.23294 5.33811 5.40815 5.45246 5.53241 5.55905 5.59224 5.70694 5.71763 5.83508 5.84839 5.89913 5.91448 5.95689 6.03218 6.05930 6.07153 6.08859 6.17967 6.33022 6.36175 6.55476 6.67403 6.73543 6.77577 6.96688 7.25217 7.64712 7.77960 7.99433 8.26163 8.67652 8.78197 9.11672 9.60426 11.07788 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018287 B = 0.005107 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.782081 B = 5481.195937 C = 6205.764583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.126 4.126 3 C 0.195 3.805 4 H -0.003 1.003 5 C -0.503 4.503 6 H 0.078 0.922 7 C 0.072 3.928 8 N -0.893 5.893 9 Si 0.858 3.142 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.253 1.253 13 N -0.653 5.653 14 C 0.076 3.924 15 H 0.111 0.889 16 C -0.187 4.187 17 C 0.526 3.474 18 O -0.525 6.525 19 N -0.619 5.619 20 C 0.103 3.897 21 C -0.135 4.135 22 C -0.090 4.090 23 C -0.147 4.147 24 C -0.130 4.130 25 C 0.114 3.886 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.262 0.738 32 H 0.327 0.673 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 14.983 4.355 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.164 4.164 3 C 0.087 3.913 4 H 0.014 0.986 5 C -0.541 4.541 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.685 3.315 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.178 1.178 13 N -0.284 5.284 14 C -0.038 4.038 15 H 0.129 0.871 16 C -0.246 4.246 17 C 0.314 3.686 18 O -0.399 6.399 19 N -0.356 5.356 20 C -0.020 4.020 21 C -0.173 4.173 22 C -0.109 4.109 23 C -0.204 4.204 24 C -0.168 4.168 25 C -0.009 4.009 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.647 14.456 5.047 17.115 hybrid contribution -1.112 0.079 -1.571 1.926 sum -8.759 14.535 3.476 17.322 Atomic orbital electron populations 1.21927 0.98604 1.00430 1.00401 1.22053 0.92454 0.99858 1.02071 1.19558 0.96691 0.89738 0.85311 0.98571 1.20995 0.89163 1.42012 1.01906 0.90350 1.24914 0.94691 0.94768 0.98567 1.69978 1.11178 1.44447 1.27508 0.87271 0.82270 0.77845 0.84106 1.20902 1.21374 1.17766 1.60167 1.35009 1.00920 1.32311 1.21361 0.98388 0.91384 0.92695 0.87079 1.22702 0.97996 1.02050 1.01861 1.20956 0.74930 0.80644 0.92023 1.90629 1.49055 1.61375 1.38798 1.48110 1.72686 1.06774 1.08001 1.21824 0.97505 0.93756 0.88946 1.21961 0.98793 0.99113 0.97418 1.21098 0.98391 0.96295 0.95124 1.21828 0.97723 0.99493 1.01377 1.21992 0.98556 0.97861 0.98440 1.21468 0.96277 0.96985 0.86173 0.93702 0.93375 0.93832 0.92168 0.91667 0.92815 0.85432 0.92569 0.91616 0.91377 0.88667 0.91848 0.90841 0.90866 0.91343 0.92491 0.92748 0.92848 0.91122 0.91226 0.92288 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.81 37.16 0.36 -2.35 16 2 C -0.13 -2.72 4.79 -26.73 -0.13 -2.85 16 3 C 0.20 4.50 1.41 -68.86 -0.10 4.40 16 4 H 0.00 -0.07 5.50 -51.93 -0.29 -0.36 16 5 C -0.50 -14.01 8.73 -34.44 -0.30 -14.31 16 6 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 7 C 0.07 2.05 5.34 -17.82 -0.10 1.95 16 8 N -0.89 -27.12 13.96 55.43 0.77 -26.35 16 9 Si 0.86 20.66 25.76 -169.99 -4.38 16.28 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.25 -5.69 5.49 56.52 0.31 -5.38 16 13 N -0.65 -13.88 5.53 -102.17 -0.56 -14.44 16 14 C 0.08 1.39 1.99 -68.86 -0.14 1.25 16 15 H 0.11 2.20 6.91 -51.93 -0.36 1.84 16 16 C -0.19 -2.68 8.74 37.16 0.32 -2.35 16 17 C 0.53 9.63 7.09 -10.99 -0.08 9.55 16 18 O -0.52 -11.48 15.89 5.55 0.09 -11.40 16 19 N -0.62 -8.86 2.98 -173.03 -0.52 -9.38 16 20 C 0.10 1.16 5.21 -3.94 -0.02 1.14 16 21 C -0.13 -1.40 5.34 -26.84 -0.14 -1.54 16 22 C -0.09 -0.85 2.68 -90.58 -0.24 -1.09 16 23 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 24 C -0.13 -1.40 5.36 -26.61 -0.14 -1.54 16 25 C 0.11 1.43 6.42 -3.71 -0.02 1.40 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.77 6.33 -51.93 -0.33 0.44 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.36 5.02 -51.93 -0.26 1.10 16 30 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.33 6.44 6.30 -39.29 -0.25 6.19 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.77 5.37 -51.93 -0.28 0.49 16 35 H 0.07 1.01 7.12 -51.93 -0.37 0.64 16 36 H 0.10 1.11 4.37 -51.93 -0.23 0.89 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.31 7.04 -51.93 -0.37 0.95 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -32.24 350.25 -7.99 -40.22 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -8.29 Total: 7.02 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -0.38 Total: -7.24 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.31 Total: -50.17 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.38 Total: 16.28 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.24 -7.99 -40.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563365474.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.724 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds