Wall clock time and date at job start Tue Mar 31 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46778 * 2 1 4 4 H 1.09003 * 109.47064 * 186.70293 * 3 2 1 5 5 C 1.50700 * 109.47084 * 306.70892 * 3 2 1 6 6 H 1.07994 * 120.00043 * 120.00304 * 5 3 2 7 7 C 1.37875 * 120.00028 * 299.99618 * 5 3 2 8 8 N 1.31512 * 120.00348 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99819 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47027 * 89.99813 * 9 7 5 11 11 H 1.48496 * 109.46931 * 209.99771 * 9 7 5 12 12 H 1.48500 * 109.47127 * 329.99828 * 9 7 5 13 13 N 1.46901 * 109.47126 * 66.70742 * 3 2 1 14 14 C 1.46904 * 110.99967 * 85.59034 * 13 3 2 15 15 H 1.08996 * 109.46897 * 324.12906 * 14 13 3 16 16 C 1.52997 * 109.47079 * 84.12954 * 14 13 3 17 17 C 1.50701 * 109.47159 * 204.12878 * 14 13 3 18 18 O 1.21287 * 120.00073 * 350.26694 * 17 14 13 19 19 N 1.34770 * 120.00315 * 170.54237 * 17 14 13 20 20 C 1.46927 * 120.62753 * 355.30927 * 19 17 14 21 21 C 1.52771 * 109.00926 * 233.58345 * 20 19 17 22 22 C 1.53038 * 109.38314 * 305.59053 * 21 20 19 23 23 C 1.53001 * 109.45000 * 181.25243 * 22 21 20 24 24 C 1.53037 * 109.53865 * 61.23528 * 22 21 20 25 25 C 1.46927 * 120.63499 * 175.58876 * 19 17 14 26 26 H 1.09002 * 109.46657 * 184.11423 * 1 2 3 27 27 H 1.08994 * 109.47669 * 304.11885 * 1 2 3 28 28 H 1.09005 * 109.47262 * 64.12227 * 1 2 3 29 29 H 1.08996 * 109.47617 * 240.00239 * 2 1 3 30 30 H 1.08999 * 109.46928 * 119.99463 * 2 1 3 31 31 H 0.96996 * 120.00497 * 180.02562 * 8 7 5 32 32 H 1.00905 * 111.00102 * 321.63892 * 13 3 2 33 33 H 1.09000 * 109.47047 * 295.41922 * 16 14 13 34 34 H 1.09003 * 109.47043 * 55.42085 * 16 14 13 35 35 H 1.09000 * 109.46658 * 175.41612 * 16 14 13 36 36 H 1.09004 * 109.58808 * 353.41734 * 20 19 17 37 37 H 1.09003 * 109.58681 * 113.84468 * 20 19 17 38 38 H 1.09003 * 109.56347 * 185.55115 * 21 20 19 39 39 H 1.08993 * 109.35613 * 65.49944 * 21 20 19 40 40 H 1.09004 * 109.46053 * 301.21878 * 22 21 20 41 41 H 1.08997 * 109.46909 * 299.93988 * 23 22 21 42 42 H 1.09007 * 109.46785 * 59.93543 * 23 22 21 43 43 H 1.08998 * 109.46926 * 179.97438 * 23 22 21 44 44 H 1.09006 * 109.49739 * 178.68291 * 24 22 21 45 45 H 1.09005 * 109.52291 * 58.60369 * 24 22 21 46 46 H 1.08995 * 109.58933 * 246.15221 * 25 19 17 47 47 H 1.08997 * 109.58337 * 6.44110 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1233 1.4450 -0.1200 5 6 1.4066 2.1992 -1.1390 6 1 0.8023 3.0714 -0.9381 7 6 1.5988 1.7781 -2.4378 8 7 1.0465 2.4386 -3.4319 9 14 2.6437 0.2691 -2.7853 10 1 1.7823 -0.9406 -2.7832 11 1 3.2932 0.4119 -4.1130 12 1 3.6860 0.1364 -1.7360 13 7 1.6867 2.0868 1.2721 14 6 2.6981 1.8099 2.3010 15 1 3.0794 0.7970 2.1724 16 6 3.8491 2.8090 2.1666 17 6 2.0748 1.9425 3.6666 18 8 0.9603 2.4070 3.7821 19 7 2.7578 1.5501 4.7602 20 6 4.0677 0.8973 4.6303 21 6 4.0420 -0.4260 5.3931 22 6 3.6069 -0.1710 6.8380 23 6 3.6108 -1.4909 7.6118 24 6 2.1967 0.4233 6.8506 25 6 2.2040 1.7613 6.1046 26 1 -0.3633 -1.0251 0.0737 27 1 -0.3634 0.5764 0.8507 28 1 -0.3634 0.4485 -0.9247 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.1814 2.1422 -4.3455 32 1 0.7696 1.8002 1.5802 33 1 4.3515 2.6580 1.2112 34 1 3.4560 3.8246 2.2140 35 1 4.5595 2.6561 2.9790 36 1 4.2783 0.7068 3.5779 37 1 4.8404 1.5422 5.0488 38 1 5.0371 -0.8709 5.3859 39 1 3.3360 -1.1050 4.9151 40 1 4.2994 0.5274 7.3079 41 1 2.9180 -2.1893 7.1423 42 1 4.6152 -1.9143 7.6029 43 1 3.3014 -1.3096 8.6411 44 1 1.8783 0.5829 7.8808 45 1 1.5076 -0.2636 6.3591 46 1 2.8216 2.4779 6.6458 47 1 1.1861 2.1430 6.0246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563365475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:05 Heat of formation + Delta-G solvation = -41.260733 kcal Electronic energy + Delta-G solvation = -23836.899661 eV Core-core repulsion = 20633.276346 eV Total energy + Delta-G solvation = -3203.623315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.37064 -38.01808 -36.58935 -34.19867 -33.20934 -31.69953 -31.15830 -28.95226 -28.19903 -26.57933 -24.42251 -23.53433 -23.20160 -22.36524 -20.56937 -19.36656 -18.82617 -17.19296 -16.50559 -15.83619 -15.54094 -15.06492 -14.88068 -14.67549 -14.43839 -13.86087 -13.77073 -13.47920 -13.24131 -13.04343 -12.88705 -12.63398 -12.38260 -12.15978 -12.08416 -11.90636 -11.80860 -11.45528 -11.29702 -11.14698 -11.01581 -10.73203 -10.69642 -10.65371 -10.60264 -10.40574 -9.84862 -9.47164 -9.29942 -9.07330 -8.66408 -8.51199 -7.42632 -6.00445 -3.96031 2.81391 2.97675 3.27222 3.34483 3.38831 4.41538 4.42605 4.42778 4.51515 4.72890 4.89014 4.96601 5.03356 5.15398 5.21382 5.28942 5.33532 5.38332 5.44471 5.49910 5.55922 5.60395 5.66353 5.70904 5.81601 5.85350 5.88146 5.90869 5.97866 6.01282 6.13273 6.17425 6.21806 6.50069 6.55692 6.59104 6.79995 6.84540 7.00492 7.28828 7.39211 7.74442 7.92183 8.29894 8.42325 8.73713 9.13227 9.62018 11.13078 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025977 B = 0.004324 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.621190 B = 6474.115435 C = 6710.572639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.159 4.159 3 C 0.186 3.814 4 H 0.035 0.965 5 C -0.487 4.487 6 H 0.083 0.917 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.879 3.121 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.271 1.271 13 N -0.653 5.653 14 C 0.067 3.933 15 H 0.056 0.944 16 C -0.135 4.135 17 C 0.517 3.483 18 O -0.527 6.527 19 N -0.616 5.616 20 C 0.105 3.895 21 C -0.132 4.132 22 C -0.092 4.092 23 C -0.147 4.147 24 C -0.129 4.129 25 C 0.111 3.889 26 H 0.028 0.972 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.345 0.655 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.364 -7.281 20.948 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.198 4.198 3 C 0.077 3.923 4 H 0.052 0.948 5 C -0.525 4.525 6 H 0.101 0.899 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.710 3.290 10 H -0.207 1.207 11 H -0.224 1.224 12 H -0.196 1.196 13 N -0.287 5.287 14 C -0.047 4.047 15 H 0.073 0.927 16 C -0.193 4.193 17 C 0.305 3.695 18 O -0.402 6.402 19 N -0.352 5.352 20 C -0.018 4.018 21 C -0.171 4.171 22 C -0.111 4.111 23 C -0.204 4.204 24 C -0.167 4.167 25 C -0.012 4.012 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.167 0.833 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.980 -6.389 20.629 23.023 hybrid contribution 0.485 -2.000 -0.097 2.060 sum 8.465 -8.389 20.532 23.740 Atomic orbital electron populations 1.21604 0.95595 0.98698 1.03303 1.22529 0.97526 1.01076 0.98711 1.19785 0.96170 0.88249 0.88114 0.94757 1.20867 1.30832 1.12720 0.88128 0.89884 1.24878 0.95545 0.96515 0.96217 1.69876 1.44732 1.40135 0.99196 0.86996 0.81160 0.84023 0.76831 1.20651 1.22448 1.19609 1.60675 1.03734 1.62683 1.01630 1.21498 0.95564 0.98662 0.88961 0.92674 1.21787 0.95775 0.99948 1.01771 1.21045 0.85392 0.76678 0.86350 1.90672 1.19101 1.44203 1.86224 1.48102 1.20347 1.60724 1.06012 1.21745 0.84676 0.93493 1.01931 1.21945 1.02187 0.97415 0.95509 1.21119 0.96997 0.97410 0.95548 1.21826 1.01746 0.96951 0.99873 1.21982 0.97042 0.97174 1.00531 1.21534 1.00857 0.96573 0.82220 0.95287 0.93550 0.90456 0.93262 0.95187 0.92756 0.83328 0.91171 0.91309 0.93052 0.89127 0.91350 0.90624 0.91413 0.91035 0.92687 0.92651 0.92686 0.90905 0.91500 0.91837 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.36 37.16 0.35 -2.48 16 2 C -0.16 -3.44 5.17 -26.73 -0.14 -3.58 16 3 C 0.19 4.34 1.73 -68.86 -0.12 4.22 16 4 H 0.03 0.82 6.15 -51.93 -0.32 0.50 16 5 C -0.49 -13.58 7.97 -34.44 -0.27 -13.85 16 6 H 0.08 2.60 8.06 -52.49 -0.42 2.17 16 7 C 0.07 1.98 5.32 -17.82 -0.09 1.88 16 8 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 9 Si 0.88 21.65 24.30 -169.99 -4.13 17.51 16 10 H -0.28 -6.75 6.93 56.52 0.39 -6.36 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.27 -6.32 6.53 56.52 0.37 -5.95 16 13 N -0.65 -13.99 5.86 -102.16 -0.60 -14.59 16 14 C 0.07 1.15 1.97 -68.86 -0.14 1.01 16 15 H 0.06 0.89 5.96 -51.93 -0.31 0.58 16 16 C -0.13 -2.07 9.03 37.16 0.34 -1.74 16 17 C 0.52 8.59 6.94 -10.99 -0.08 8.52 16 18 O -0.53 -10.64 15.23 5.55 0.08 -10.56 16 19 N -0.62 -7.73 2.98 -173.02 -0.52 -8.25 16 20 C 0.10 1.01 5.01 -3.93 -0.02 0.99 16 21 C -0.13 -1.08 5.34 -26.83 -0.14 -1.22 16 22 C -0.09 -0.69 2.68 -90.58 -0.24 -0.93 16 23 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 24 C -0.13 -1.12 5.36 -26.61 -0.14 -1.26 16 25 C 0.11 1.20 6.44 -3.71 -0.02 1.18 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.94 6.38 -51.93 -0.33 0.61 16 28 H 0.08 1.83 7.10 -51.93 -0.37 1.46 16 29 H 0.05 1.11 3.48 -51.93 -0.18 0.93 16 30 H 0.03 0.57 7.40 -51.93 -0.38 0.19 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.34 7.61 5.51 -39.29 -0.22 7.40 16 33 H 0.07 1.13 7.43 -51.93 -0.39 0.74 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.61 6.31 -51.93 -0.33 0.28 16 36 H 0.09 0.91 5.13 -51.93 -0.27 0.64 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.18 7.00 -51.93 -0.36 0.81 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -31.66 346.34 -7.68 -39.34 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -8.13 Total: 5.88 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.39 Total: -7.89 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.34 Total: -49.50 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.13 Total: 17.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.66 -7.68 -39.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563365475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.917 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds