Wall clock time and date at job start Tue Mar 31 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47198 * 2 1 4 4 H 1.09000 * 109.47374 * 174.03375 * 3 2 1 5 5 C 1.50707 * 109.46894 * 54.03089 * 3 2 1 6 6 H 1.07991 * 119.99917 * 239.99927 * 5 3 2 7 7 C 1.37881 * 119.99747 * 60.00048 * 5 3 2 8 8 N 1.31519 * 119.99821 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99718 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47708 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47001 * 120.00330 * 9 7 5 12 12 H 1.48509 * 109.47109 * 240.00177 * 9 7 5 13 13 N 1.46901 * 109.47398 * 294.03321 * 3 2 1 14 14 C 1.46895 * 110.99917 * 275.33549 * 13 3 2 15 15 C 1.50706 * 109.47003 * 177.28863 * 14 13 3 16 16 O 1.21283 * 120.00013 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99909 * 180.02562 * 15 14 13 18 18 C 1.46500 * 119.99957 * 179.97438 * 17 15 14 19 19 C 1.54241 * 108.89517 * 277.87687 * 18 17 15 20 20 C 1.50480 * 108.52472 * 159.26261 * 19 18 17 21 21 C 1.54069 * 112.49550 * 94.15702 * 20 19 18 22 22 C 1.54067 * 112.81532 * 318.27872 * 21 20 19 23 23 C 1.50471 * 112.49694 * 318.29198 * 22 21 20 24 24 C 1.45545 * 108.89523 * 154.99735 * 18 17 15 25 25 H 1.09000 * 109.46711 * 298.66209 * 1 2 3 26 26 H 1.08996 * 109.47190 * 178.66412 * 1 2 3 27 27 H 1.09004 * 109.47361 * 58.66410 * 1 2 3 28 28 H 1.08992 * 109.47477 * 120.00434 * 2 1 3 29 29 H 1.09001 * 109.47145 * 240.00656 * 2 1 3 30 30 H 0.97003 * 119.99361 * 179.97438 * 8 7 5 31 31 H 1.00899 * 110.99658 * 39.28570 * 13 3 2 32 32 H 1.09005 * 109.47061 * 297.28134 * 14 13 3 33 33 H 1.08997 * 109.47274 * 57.28649 * 14 13 3 34 34 H 0.97004 * 120.00496 * 359.97438 * 17 15 14 35 35 H 1.08996 * 108.87642 * 36.39410 * 18 17 15 36 36 H 1.08994 * 109.63254 * 278.97514 * 19 18 17 37 37 H 1.09010 * 109.62852 * 39.55605 * 19 18 17 38 38 H 1.08995 * 108.87318 * 333.37646 * 20 19 18 39 39 H 1.09001 * 108.87467 * 214.93391 * 20 19 18 40 40 H 1.09004 * 108.80936 * 197.42112 * 21 20 19 41 41 H 1.08993 * 108.72787 * 79.08682 * 21 20 19 42 42 H 1.08994 * 108.87669 * 197.50812 * 22 21 20 43 43 H 1.09002 * 108.87442 * 79.06347 * 22 21 20 44 44 H 1.09001 * 109.62749 * 334.43978 * 23 22 21 45 45 H 1.09006 * 109.62483 * 213.86145 * 23 22 21 46 46 H 1.08992 * 108.89789 * 303.43895 * 24 18 17 47 47 H 1.08996 * 108.89488 * 62.03075 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 0.1068 5 6 1.4206 2.1943 1.1500 6 1 0.8140 3.0673 0.9601 7 6 1.6286 1.7674 2.4444 8 7 2.3678 0.7045 2.6756 9 14 0.8614 2.6996 3.8698 10 1 0.0819 3.8501 3.3467 11 1 -0.0406 1.7937 4.6254 12 1 1.9328 3.1957 4.7707 13 7 1.6715 2.0923 -1.2649 14 6 2.6588 1.8018 -2.3131 15 6 2.2138 2.4281 -3.6097 16 8 1.1762 3.0542 -3.6560 17 7 2.9685 2.2914 -4.7179 18 6 2.5357 2.8997 -5.9784 19 6 1.5092 1.9688 -6.6557 20 6 0.7037 2.7781 -7.6358 21 6 1.2764 2.7137 -9.0647 22 6 2.8138 2.8089 -9.0969 23 6 3.3470 3.8394 -8.1388 24 6 3.7043 3.1371 -6.8128 25 1 -0.3633 0.4929 0.9018 26 1 -0.3633 -1.0273 -0.0240 27 1 -0.3634 0.5345 -0.8778 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 2.5144 0.4044 3.5863 31 1 0.7447 1.8187 -1.5553 32 1 3.6264 2.2124 -2.0246 33 1 2.7455 0.7229 -2.4416 34 1 3.7982 1.7902 -4.6810 35 1 2.0561 3.8544 -5.7628 36 1 2.0310 1.1697 -7.1822 37 1 0.8474 1.5429 -5.9014 38 1 0.6900 3.8174 -7.3078 39 1 -0.3188 2.4007 -7.6484 40 1 0.8609 3.5360 -9.6472 41 1 0.9728 1.7717 -9.5213 42 1 3.1298 3.0695 -10.1070 43 1 3.2328 1.8365 -8.8381 44 1 2.5866 4.5990 -7.9576 45 1 4.2392 4.3033 -8.5594 46 1 4.4102 3.7594 -6.2629 47 1 4.1776 2.1814 -7.0376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563366599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:09 Heat of formation + Delta-G solvation = -59.141264 kcal Electronic energy + Delta-G solvation = -22891.570806 eV Core-core repulsion = 19687.172134 eV Total energy + Delta-G solvation = -3204.398673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.13314 -38.33886 -36.21212 -34.51640 -32.51868 -32.36479 -31.06517 -30.30472 -27.11049 -25.35904 -24.92970 -23.86805 -23.11828 -20.91185 -20.16526 -19.45275 -19.25424 -17.12234 -16.50469 -15.85971 -15.52386 -15.36550 -14.81811 -14.63613 -14.27639 -14.10501 -13.55811 -13.39177 -13.20769 -12.88528 -12.75648 -12.45558 -12.37350 -12.27541 -11.91476 -11.57772 -11.48698 -11.14534 -10.91307 -10.83362 -10.76421 -10.70795 -10.55620 -10.48674 -10.47601 -9.99049 -9.87022 -9.54012 -9.37667 -8.91529 -8.89992 -8.32278 -7.19071 -5.95488 -3.95917 3.03134 3.29415 3.34554 3.42611 3.49561 4.38014 4.48193 4.55717 4.61121 4.90106 4.91309 5.02162 5.09250 5.11443 5.29780 5.36582 5.36774 5.43756 5.50359 5.62868 5.72576 5.78042 5.87827 5.90686 5.92194 5.93413 5.97360 6.01548 6.13135 6.20592 6.27688 6.36072 6.40883 6.58626 6.65164 6.91407 7.24147 7.28459 7.52393 7.67477 7.72904 7.93269 8.28787 8.54007 8.58783 8.66539 9.11032 9.67695 11.11983 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036387 B = 0.003025 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.325755 B = 9253.039472 C = 9356.216503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.486 4.486 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.668 5.668 14 C 0.042 3.958 15 C 0.513 3.487 16 O -0.525 6.525 17 N -0.740 5.740 18 C 0.149 3.851 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.128 4.128 25 H 0.067 0.933 26 H 0.022 0.978 27 H 0.031 0.969 28 H 0.093 0.907 29 H 0.009 0.991 30 H 0.258 0.742 31 H 0.337 0.663 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.396 0.604 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 0.775 -22.225 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.525 4.525 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.301 5.301 14 C -0.091 4.091 15 C 0.299 3.701 16 O -0.399 6.399 17 N -0.393 5.393 18 C 0.045 3.955 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.166 4.166 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.112 0.888 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.157 0.843 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.230 0.770 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.893 1.753 -21.910 22.169 hybrid contribution -0.081 -0.888 0.646 1.101 sum 2.812 0.865 -21.264 21.467 Atomic orbital electron populations 1.21572 0.97564 0.98021 1.01458 1.22119 0.95214 1.01060 1.00127 1.19262 0.96115 0.88668 0.85196 0.94860 1.21109 1.30253 1.11502 0.89593 0.91806 1.24906 0.95607 0.95205 0.98696 1.69895 1.39462 1.24268 1.20165 0.86501 0.79016 0.79971 0.82330 1.19677 1.21250 1.21217 1.60650 1.03789 1.63300 1.02392 1.21825 0.99293 0.97860 0.90161 1.21064 0.83919 0.79973 0.85096 1.90669 1.23791 1.40158 1.85281 1.46311 1.26447 1.57201 1.09382 1.19829 0.95072 0.97277 0.83353 1.21705 0.98012 0.98272 0.98253 1.21250 0.99142 1.00895 0.94198 1.21934 0.95175 1.01538 0.96822 1.21360 0.95653 0.99507 0.99207 1.21233 1.01081 0.98230 0.94428 1.20765 0.97832 1.01386 0.96633 0.91441 0.95889 0.95047 0.88840 0.97207 0.93219 0.84341 0.88989 0.93586 0.77049 0.89984 0.91776 0.91315 0.91835 0.92144 0.92367 0.92437 0.92410 0.92035 0.91239 0.91557 0.91415 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.39 37.16 0.35 -2.47 16 2 C -0.15 -3.40 5.50 -26.73 -0.15 -3.55 16 3 C 0.22 5.34 2.33 -68.86 -0.16 5.18 16 4 H 0.03 0.89 7.84 -51.93 -0.41 0.48 16 5 C -0.49 -13.38 7.35 -34.44 -0.25 -13.63 16 6 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 7 C 0.06 1.54 5.22 -17.82 -0.09 1.45 16 8 N -0.90 -25.28 11.39 55.43 0.63 -24.65 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.67 -14.86 5.90 -109.22 -0.64 -15.51 16 14 C 0.04 0.74 5.96 -4.98 -0.03 0.71 16 15 C 0.51 8.53 7.60 -10.99 -0.08 8.44 16 16 O -0.52 -10.74 15.81 5.56 0.09 -10.65 16 17 N -0.74 -8.94 5.03 -56.63 -0.28 -9.22 16 18 C 0.15 1.63 1.94 -70.80 -0.14 1.49 16 19 C -0.12 -1.31 5.18 -27.34 -0.14 -1.46 16 20 C -0.12 -1.11 5.31 -27.43 -0.15 -1.25 16 21 C -0.12 -0.88 5.85 -25.62 -0.15 -1.03 16 22 C -0.12 -0.82 5.31 -27.44 -0.15 -0.97 16 23 C -0.11 -0.81 5.61 -27.34 -0.15 -0.96 16 24 C -0.13 -1.05 4.61 -29.60 -0.14 -1.18 16 25 H 0.07 1.62 7.04 -51.93 -0.37 1.25 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.64 6.43 -51.93 -0.33 0.31 16 28 H 0.09 2.43 6.25 -51.93 -0.32 2.11 16 29 H 0.01 0.20 7.28 -51.93 -0.38 -0.18 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.34 7.59 6.20 -39.29 -0.24 7.34 16 32 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 33 H 0.05 0.76 7.28 -51.93 -0.38 0.38 16 34 H 0.40 3.70 8.55 -40.82 -0.35 3.35 16 35 H 0.08 1.09 6.91 -51.93 -0.36 0.73 16 36 H 0.06 0.60 6.98 -51.93 -0.36 0.24 16 37 H 0.07 0.91 7.90 -51.92 -0.41 0.50 16 38 H 0.06 0.64 6.63 -51.93 -0.34 0.30 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.42 6.63 -51.93 -0.34 0.08 16 44 H 0.07 0.55 6.98 -51.93 -0.36 0.18 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.48 7.46 -51.93 -0.39 0.09 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -30.32 353.74 -9.60 -39.93 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -8.28 Total: 7.41 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -1.43 Total: -9.24 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.30 Total: -49.38 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.32 -9.60 -39.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563366599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.213 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds