Wall clock time and date at job start Tue Mar 31 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47137 * 2 1 4 4 H 1.08994 * 109.47012 * 179.61398 * 3 2 1 5 5 C 1.50703 * 109.47043 * 299.60975 * 3 2 1 6 6 H 1.08005 * 119.99821 * 120.00353 * 5 3 2 7 7 C 1.37871 * 120.00128 * 300.00257 * 5 3 2 8 8 N 1.31509 * 119.99976 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00031 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47250 * 89.99946 * 9 7 5 11 11 H 1.48501 * 109.47209 * 209.99701 * 9 7 5 12 12 H 1.48499 * 109.47376 * 329.99674 * 9 7 5 13 13 N 1.46898 * 109.47440 * 59.60742 * 3 2 1 14 14 C 1.46902 * 110.99532 * 86.22180 * 13 3 2 15 15 C 1.50705 * 109.47201 * 185.49781 * 14 13 3 16 16 O 1.21283 * 119.99796 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00249 * 180.02562 * 15 14 13 18 18 C 1.46497 * 120.00208 * 180.02562 * 17 15 14 19 19 C 1.54247 * 108.89297 * 277.88151 * 18 17 15 20 20 C 1.50474 * 108.52615 * 159.26396 * 19 18 17 21 21 C 1.54061 * 112.49964 * 94.14667 * 20 19 18 22 22 C 1.54061 * 112.81736 * 318.28362 * 21 20 19 23 23 C 1.50476 * 112.49997 * 318.28506 * 22 21 20 24 24 C 1.45537 * 108.90021 * 154.99660 * 18 17 15 25 25 H 1.09004 * 109.46715 * 55.91035 * 1 2 3 26 26 H 1.09002 * 109.47127 * 175.90722 * 1 2 3 27 27 H 1.08992 * 109.47189 * 295.91528 * 1 2 3 28 28 H 1.08999 * 109.47131 * 240.00046 * 2 1 3 29 29 H 1.08999 * 109.46993 * 119.99935 * 2 1 3 30 30 H 0.97001 * 120.00220 * 179.97438 * 8 7 5 31 31 H 1.00891 * 111.00619 * 210.17959 * 13 3 2 32 32 H 1.08994 * 109.47557 * 305.49534 * 14 13 3 33 33 H 1.08997 * 109.47302 * 65.49800 * 14 13 3 34 34 H 0.96999 * 119.99254 * 359.97438 * 17 15 14 35 35 H 1.09007 * 108.87403 * 36.38503 * 18 17 15 36 36 H 1.08996 * 109.62558 * 278.97224 * 19 18 17 37 37 H 1.08998 * 109.62829 * 39.55235 * 19 18 17 38 38 H 1.09005 * 108.87452 * 333.36807 * 20 19 18 39 39 H 1.08998 * 108.87904 * 214.92975 * 20 19 18 40 40 H 1.09002 * 108.81177 * 197.42407 * 21 20 19 41 41 H 1.09003 * 108.72575 * 79.08409 * 21 20 19 42 42 H 1.09003 * 108.88047 * 197.50570 * 22 21 20 43 43 H 1.09002 * 108.87962 * 79.06470 * 22 21 20 44 44 H 1.09000 * 109.62132 * 334.44359 * 23 22 21 45 45 H 1.08990 * 109.63043 * 213.86367 * 23 22 21 46 46 H 1.09002 * 108.89199 * 303.43927 * 24 18 17 47 47 H 1.09002 * 108.89447 * 62.02772 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0069 5 6 1.5456 2.1501 -1.2353 6 1 0.9241 3.0285 -1.1422 7 6 1.8866 1.6762 -2.4843 8 7 2.6438 0.6069 -2.5977 9 14 1.2744 2.5537 -4.0155 10 1 2.2556 3.5941 -4.4155 11 1 1.1162 1.5723 -5.1186 12 1 -0.0355 3.1924 -3.7296 13 7 1.5427 2.1378 1.1946 14 6 2.4346 1.9181 2.3410 15 6 1.8256 2.5307 3.5760 16 8 0.7543 3.0950 3.5077 17 7 2.4720 2.4522 4.7560 18 6 1.8797 3.0472 5.9566 19 6 2.1934 4.5573 5.9725 20 6 1.2014 5.2423 6.8730 21 6 1.7279 5.4089 8.3113 22 6 2.4699 4.1600 8.8243 23 6 1.7772 2.8804 8.4406 24 6 2.4004 2.3602 7.1292 25 1 -0.3633 0.5760 -0.8511 26 1 -0.3633 -1.0251 -0.0733 27 1 -0.3633 0.4491 0.9243 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8835 0.2733 -3.4764 31 1 1.4205 3.1230 1.0150 32 1 2.5708 0.8479 2.4957 33 1 3.4008 2.3825 2.1438 34 1 3.3290 2.0012 4.8105 35 1 0.7985 2.9131 5.9200 36 1 3.2029 4.7176 6.3509 37 1 2.1097 4.9593 4.9628 38 1 0.2841 4.6541 6.8991 39 1 0.9751 6.2270 6.4641 40 1 0.8857 5.6136 8.9723 41 1 2.4099 6.2587 8.3381 42 1 2.5383 4.2118 9.9109 43 1 3.4779 4.1534 8.4094 44 1 0.7144 3.0703 8.2909 45 1 1.9123 2.1402 9.2291 46 1 2.1896 1.2947 7.0366 47 1 3.4801 2.5036 7.1719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563366600.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:12 Heat of formation + Delta-G solvation = -60.390635 kcal Electronic energy + Delta-G solvation = -22870.779970 eV Core-core repulsion = 19666.327120 eV Total energy + Delta-G solvation = -3204.452850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.10388 -38.28734 -35.98998 -34.48885 -32.55412 -32.35599 -31.02437 -30.37745 -27.20398 -25.29872 -24.89705 -23.82887 -23.01719 -20.89938 -20.15017 -19.44133 -18.95193 -17.15437 -16.50476 -15.98284 -15.55376 -15.29463 -14.89299 -14.53015 -14.32056 -13.86501 -13.50776 -13.41485 -13.21485 -13.03082 -12.78859 -12.48501 -12.35633 -12.02478 -11.83357 -11.50506 -11.37575 -11.11380 -10.90991 -10.83196 -10.77075 -10.73582 -10.54673 -10.46668 -10.36915 -10.06304 -9.84452 -9.38393 -9.23030 -8.87377 -8.77198 -8.45169 -7.21172 -6.01224 -4.06124 3.07001 3.30800 3.31617 3.38073 3.43337 4.38845 4.42478 4.56556 4.61832 4.91102 4.92377 5.02975 5.10585 5.12406 5.29224 5.31322 5.38408 5.46125 5.51067 5.63892 5.73490 5.78893 5.88222 5.91262 5.92519 5.94342 5.98163 6.02607 6.14062 6.21965 6.28884 6.56334 6.67539 6.71706 6.89275 7.26156 7.28637 7.50662 7.69614 7.78111 7.82816 7.86646 8.27979 8.39618 8.60014 8.69936 9.03262 9.58675 11.04872 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034149 B = 0.003083 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.733085 B = 9078.873920 C = 9447.152762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.668 5.668 14 C 0.043 3.957 15 C 0.513 3.487 16 O -0.522 6.522 17 N -0.741 5.741 18 C 0.149 3.851 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.128 4.128 25 H 0.056 0.944 26 H 0.013 0.987 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.008 0.992 30 H 0.260 0.740 31 H 0.339 0.661 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.395 0.605 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.665 4.328 21.552 22.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.018 0.982 5 C -0.550 4.550 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.301 5.301 14 C -0.090 4.090 15 C 0.300 3.700 16 O -0.396 6.396 17 N -0.395 5.395 18 C 0.045 3.955 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.166 4.166 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.229 0.771 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.511 4.112 21.496 21.938 hybrid contribution 0.996 0.688 -1.078 1.621 sum 2.507 4.800 20.418 21.124 Atomic orbital electron populations 1.21454 0.97397 0.97361 1.01601 1.21445 0.95196 0.98121 0.99340 1.19170 0.92849 0.91549 0.85496 0.98161 1.21191 1.31593 1.12016 0.90219 0.92138 1.24872 0.95037 0.94997 0.98924 1.69878 1.36687 1.22706 1.23621 0.86558 0.79317 0.79303 0.82628 1.20823 1.21246 1.19773 1.60397 1.47570 1.17061 1.05029 1.21789 0.95130 1.01132 0.90946 1.21080 0.85171 0.79281 0.84515 1.90667 1.21246 1.42292 1.85415 1.46326 1.24660 1.59963 1.08533 1.19817 0.99323 0.92246 0.84109 1.21702 0.99357 0.94896 1.00274 1.21248 0.99064 1.00874 0.94293 1.21933 0.99817 0.97501 0.96218 1.21361 0.99681 0.94419 1.00262 1.21230 1.00619 0.96943 0.96178 1.20764 1.00929 1.00466 0.94443 0.92480 0.96812 0.93767 0.89428 0.97333 0.92964 0.84262 0.89083 0.93624 0.77119 0.90033 0.91802 0.91282 0.91853 0.92149 0.92378 0.92440 0.92423 0.92034 0.91248 0.91574 0.91452 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 9.52 37.16 0.35 -2.46 16 2 C -0.10 -2.50 5.59 -26.73 -0.15 -2.65 16 3 C 0.22 5.39 2.30 -68.87 -0.16 5.23 16 4 H 0.00 0.02 7.84 -51.93 -0.41 -0.39 16 5 C -0.51 -13.89 7.28 -34.44 -0.25 -14.14 16 6 H 0.06 1.66 7.60 -52.48 -0.40 1.26 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.67 -14.68 5.13 -109.22 -0.56 -15.24 16 14 C 0.04 0.76 5.94 -4.97 -0.03 0.73 16 15 C 0.51 8.51 7.62 -10.98 -0.08 8.43 16 16 O -0.52 -10.68 15.99 5.55 0.09 -10.59 16 17 N -0.74 -8.98 5.03 -56.62 -0.28 -9.27 16 18 C 0.15 1.64 1.94 -70.80 -0.14 1.50 16 19 C -0.12 -1.32 5.19 -27.34 -0.14 -1.46 16 20 C -0.12 -1.11 5.31 -27.44 -0.15 -1.26 16 21 C -0.12 -0.89 5.85 -25.62 -0.15 -1.04 16 22 C -0.12 -0.83 5.31 -27.44 -0.15 -0.98 16 23 C -0.11 -0.81 5.61 -27.35 -0.15 -0.97 16 24 C -0.13 -1.05 4.60 -29.60 -0.14 -1.19 16 25 H 0.06 1.43 7.09 -51.93 -0.37 1.06 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.04 1.02 7.72 -51.93 -0.40 0.62 16 28 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 29 H 0.01 0.18 7.47 -51.93 -0.39 -0.21 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.34 7.67 8.10 -39.30 -0.32 7.36 16 32 H 0.09 1.54 7.42 -51.93 -0.39 1.16 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.40 3.73 8.55 -40.82 -0.35 3.38 16 35 H 0.08 1.09 6.91 -51.92 -0.36 0.73 16 36 H 0.06 0.61 6.98 -51.93 -0.36 0.24 16 37 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 38 H 0.06 0.65 6.63 -51.93 -0.34 0.30 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.43 6.63 -51.93 -0.34 0.08 16 44 H 0.07 0.55 6.98 -51.93 -0.36 0.19 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.48 7.46 -51.93 -0.39 0.09 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -30.13 356.47 -9.62 -39.74 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.42 Total: 6.72 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -1.42 Total: -8.61 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.22 Total: -48.95 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.13 -9.62 -39.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563366600.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.646 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds