Wall clock time and date at job start Tue Mar 31 2020 05:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46742 * 2 1 4 4 H 1.09000 * 109.47140 * 177.72431 * 3 2 1 5 5 C 1.50700 * 109.47069 * 57.72953 * 3 2 1 6 6 H 1.07999 * 119.99778 * 239.99792 * 5 3 2 7 7 C 1.37871 * 120.00272 * 59.99483 * 5 3 2 8 8 N 1.31512 * 120.00053 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00117 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46962 * 90.00222 * 9 7 5 11 11 H 1.48499 * 109.47315 * 210.00341 * 9 7 5 12 12 H 1.48500 * 109.46975 * 330.00222 * 9 7 5 13 13 N 1.46903 * 109.47302 * 297.72821 * 3 2 1 14 14 C 1.46904 * 110.99526 * 274.39447 * 13 3 2 15 15 C 1.50705 * 109.46828 * 177.66510 * 14 13 3 16 16 O 1.21285 * 119.99553 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00021 * 180.02562 * 15 14 13 18 18 C 1.46920 * 120.63026 * 4.49519 * 17 15 14 19 19 C 1.53190 * 108.77738 * 126.37273 * 18 17 15 20 20 C 1.53042 * 109.31150 * 54.63251 * 19 18 17 21 21 C 1.53043 * 109.53590 * 298.63513 * 20 19 18 22 22 C 1.46925 * 120.62837 * 184.21733 * 17 15 14 23 23 H 1.09000 * 109.58283 * 113.84086 * 22 17 15 24 24 C 1.53000 * 109.58927 * 353.41616 * 22 17 15 25 25 C 1.53000 * 109.47081 * 180.69953 * 24 22 17 26 26 H 1.08998 * 109.47146 * 299.01218 * 1 2 3 27 27 H 1.09003 * 109.46592 * 179.01220 * 1 2 3 28 28 H 1.09004 * 109.47198 * 59.01785 * 1 2 3 29 29 H 1.08993 * 109.47333 * 119.99611 * 2 1 3 30 30 H 1.08994 * 109.47110 * 240.00489 * 2 1 3 31 31 H 0.97005 * 120.00369 * 179.97438 * 8 7 5 32 32 H 1.00898 * 110.99645 * 38.34889 * 13 3 2 33 33 H 1.08994 * 109.47119 * 297.66105 * 14 13 3 34 34 H 1.08997 * 109.46960 * 57.66777 * 14 13 3 35 35 H 1.09006 * 109.58854 * 246.16045 * 18 17 15 36 36 H 1.08998 * 109.58861 * 6.43916 * 18 17 15 37 37 H 1.08998 * 109.49658 * 174.58734 * 19 18 17 38 38 H 1.08999 * 109.49254 * 294.67985 * 19 18 17 39 39 H 1.08993 * 109.45938 * 58.65774 * 20 19 18 40 40 H 1.08996 * 109.45647 * 178.63229 * 20 19 18 41 41 H 1.09003 * 109.49235 * 181.31848 * 21 20 19 42 42 H 1.09002 * 109.50060 * 301.38014 * 21 20 19 43 43 H 1.09002 * 109.47014 * 300.70208 * 24 22 17 44 44 H 1.09006 * 109.46938 * 60.70126 * 24 22 17 45 45 H 1.08999 * 109.46677 * 66.74000 * 25 24 22 46 46 H 1.09006 * 109.46703 * 186.73600 * 25 24 22 47 47 H 1.08997 * 109.47433 * 306.73426 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1292 1.4429 0.0408 5 6 1.4922 2.1690 1.2014 6 1 0.8756 3.0455 1.0675 7 6 1.7780 1.7146 2.4713 8 7 2.5292 0.6475 2.6343 9 14 1.0995 2.6155 3.9604 10 1 -0.2231 2.0461 4.3232 11 1 2.0357 2.4593 5.1025 12 1 0.9466 4.0573 3.6394 13 7 1.5956 2.1190 -1.2259 14 6 2.5293 1.8700 -2.3325 15 6 2.0120 2.5305 -3.5844 16 8 0.9685 3.1482 -3.5573 17 7 2.7088 2.4347 -4.7341 18 6 3.9221 1.6094 -4.8075 19 6 3.7800 0.6265 -5.9739 20 6 3.4698 1.4034 -7.2554 21 6 2.1457 2.1531 -7.0915 22 6 2.2662 3.1489 -5.9394 23 1 2.9958 3.9163 -6.1980 24 6 0.9050 3.7977 -5.6804 25 6 0.4386 4.5259 -6.9426 26 1 -0.3633 0.4984 0.8987 27 1 -0.3632 -1.0276 -0.0177 28 1 -0.3634 0.5290 -0.8811 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 2.7307 0.3280 3.5278 32 1 0.6583 1.8395 -1.4737 33 1 3.5071 2.2813 -2.0823 34 1 2.6181 0.7964 -2.4982 35 1 4.7895 2.2487 -4.9719 36 1 4.0460 1.0582 -3.8754 37 1 4.7113 0.0742 -6.0996 38 1 2.9684 -0.0705 -5.7654 39 1 4.2699 2.1175 -7.4498 40 1 3.3922 0.7084 -8.0915 41 1 1.9137 2.6873 -8.0129 42 1 1.3493 1.4417 -6.8732 43 1 0.1799 3.0279 -5.4161 44 1 0.9926 4.5110 -4.8608 45 1 0.2361 3.7978 -7.7281 46 1 -0.4702 5.0865 -6.7237 47 1 1.2176 5.2119 -7.2751 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564734717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:38 Heat of formation + Delta-G solvation = -36.126360 kcal Electronic energy + Delta-G solvation = -23597.923823 eV Core-core repulsion = 20394.523152 eV Total energy + Delta-G solvation = -3203.400672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43084 -37.49958 -36.17763 -34.32480 -32.84799 -32.35810 -30.58331 -29.48607 -27.32373 -25.67009 -24.40963 -23.92725 -23.17605 -21.19759 -20.93620 -19.26870 -18.84418 -16.76743 -16.14737 -15.67522 -15.61476 -14.76166 -14.69299 -14.57360 -14.41735 -13.88251 -13.56028 -13.44058 -13.12369 -12.96811 -12.72958 -12.50833 -12.26403 -12.08120 -11.92225 -11.73198 -11.49889 -11.26178 -11.09965 -10.90868 -10.85386 -10.70393 -10.57206 -10.54887 -10.51597 -9.97985 -9.83391 -9.57403 -9.03180 -8.65906 -8.43164 -8.31628 -7.18429 -5.95242 -3.96277 2.98116 3.07264 3.35776 3.42192 3.48130 4.46502 4.52667 4.62667 4.67037 4.86967 4.98637 5.14401 5.17891 5.28057 5.36361 5.37271 5.39842 5.48516 5.58772 5.59502 5.69918 5.73659 5.77395 5.85369 5.88385 5.92219 5.94335 6.11872 6.12820 6.34080 6.37774 6.42049 6.49275 6.56312 6.83268 6.89681 7.22559 7.26780 7.48305 7.57959 7.72194 7.92496 8.28974 8.51365 8.58787 8.66313 9.10473 9.67629 11.11846 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025394 B = 0.003940 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.361109 B = 7104.152018 C = 7625.979240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.147 4.147 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.486 4.486 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.668 5.668 14 C 0.043 3.957 15 C 0.515 3.485 16 O -0.517 6.517 17 N -0.618 5.618 18 C 0.107 3.893 19 C -0.136 4.136 20 C -0.119 4.119 21 C -0.132 4.132 22 C 0.149 3.851 23 H 0.065 0.935 24 C -0.112 4.112 25 C -0.159 4.159 26 H 0.066 0.934 27 H 0.024 0.976 28 H 0.031 0.969 29 H 0.096 0.904 30 H 0.009 0.991 31 H 0.259 0.741 32 H 0.337 0.663 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 -0.035 -19.717 19.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.187 4.187 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.524 4.524 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.302 5.302 14 C -0.090 4.090 15 C 0.304 3.696 16 O -0.392 6.392 17 N -0.354 5.354 18 C -0.016 4.016 19 C -0.174 4.174 20 C -0.157 4.157 21 C -0.171 4.171 22 C 0.046 3.954 23 H 0.083 0.917 24 C -0.149 4.149 25 C -0.217 4.217 26 H 0.085 0.915 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.114 0.886 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.830 0.812 -19.353 19.576 hybrid contribution -0.306 -0.709 0.539 0.942 sum 2.524 0.104 -18.814 18.983 Atomic orbital electron populations 1.21592 0.97705 0.98203 1.01320 1.22133 0.94971 1.01180 1.00382 1.19245 0.95594 0.88383 0.85950 0.94915 1.21073 1.30567 1.11465 0.89343 0.91875 1.24900 0.95488 0.95189 0.98806 1.69868 1.38245 1.23619 1.22108 0.86550 0.78591 0.80327 0.82283 1.20861 1.21465 1.19861 1.60659 1.04214 1.63074 1.02222 1.21879 0.99190 0.97572 0.90370 1.21028 0.84026 0.80366 0.84192 1.90706 1.22803 1.41153 1.84530 1.48216 1.27470 1.49299 1.10443 1.21721 0.87058 0.93051 0.99810 1.21921 1.02370 0.98093 0.95026 1.21516 0.97588 0.99162 0.97424 1.21975 0.97897 0.98721 0.98486 1.21193 0.97017 0.92943 0.84268 0.91687 1.22063 0.94881 1.01024 0.96936 1.21996 1.01038 1.00199 0.98485 0.91532 0.95733 0.95030 0.88551 0.97234 0.93156 0.84300 0.89090 0.93785 0.91518 0.89288 0.90758 0.91456 0.91885 0.91884 0.90855 0.91592 0.90746 0.89373 0.93229 0.92690 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.41 37.16 0.35 -2.49 16 2 C -0.15 -3.43 5.55 -26.73 -0.15 -3.58 16 3 C 0.22 5.34 2.33 -68.86 -0.16 5.18 16 4 H 0.03 0.87 7.82 -51.93 -0.41 0.47 16 5 C -0.49 -13.32 7.49 -34.44 -0.26 -13.58 16 6 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 7 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 8 N -0.90 -25.22 11.34 55.43 0.63 -24.59 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.67 -14.78 5.90 -109.21 -0.64 -15.42 16 14 C 0.04 0.76 4.35 -4.97 -0.02 0.74 16 15 C 0.51 8.69 7.64 -10.98 -0.08 8.61 16 16 O -0.52 -10.15 11.55 5.55 0.06 -10.09 16 17 N -0.62 -8.12 2.98 -165.48 -0.49 -8.61 16 18 C 0.11 1.09 6.33 -3.71 -0.02 1.07 16 19 C -0.14 -1.17 6.08 -26.61 -0.16 -1.33 16 20 C -0.12 -0.96 5.89 -26.69 -0.16 -1.11 16 21 C -0.13 -1.25 4.82 -26.83 -0.13 -1.38 16 22 C 0.15 1.74 3.00 -67.82 -0.20 1.54 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 24 C -0.11 -1.49 3.86 -26.73 -0.10 -1.59 16 25 C -0.16 -1.65 9.36 37.16 0.35 -1.31 16 26 H 0.07 1.58 7.19 -51.93 -0.37 1.20 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.03 0.64 6.29 -51.93 -0.33 0.31 16 29 H 0.10 2.51 6.13 -51.93 -0.32 2.19 16 30 H 0.01 0.19 7.41 -51.93 -0.38 -0.19 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.34 7.51 5.99 -39.29 -0.24 7.28 16 33 H 0.09 1.58 8.06 -51.93 -0.42 1.16 16 34 H 0.04 0.74 6.76 -51.93 -0.35 0.39 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.93 5.96 -51.93 -0.31 0.62 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.60 6.91 -51.93 -0.36 0.24 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.15 7.02 -51.93 -0.36 0.78 16 44 H 0.09 1.42 6.46 -51.93 -0.34 1.09 16 45 H 0.05 0.45 6.94 -51.93 -0.36 0.09 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -29.37 350.50 -9.35 -38.71 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -8.31 Total: 5.94 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -0.85 Total: -7.77 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.51 Total: -48.63 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.06 Total: -10.09 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.37 -9.35 -38.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564734717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.587 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds