Wall clock time and date at job start Tue Mar 31 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47039 * 2 1 4 4 H 1.08999 * 109.47316 * 305.77824 * 3 2 1 5 5 C 1.50696 * 109.47571 * 185.77165 * 3 2 1 6 6 H 1.08002 * 120.00444 * 240.00753 * 5 3 2 7 7 C 1.37875 * 119.99949 * 59.99797 * 5 3 2 8 8 N 1.31516 * 119.99961 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00158 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46901 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47048 * 120.00356 * 9 7 5 12 12 H 1.48500 * 109.47177 * 240.00318 * 9 7 5 13 13 N 1.46900 * 109.46921 * 65.77167 * 3 2 1 14 14 C 1.46897 * 111.00419 * 209.37748 * 13 3 2 15 15 C 1.50703 * 109.47249 * 175.19590 * 14 13 3 16 16 O 1.21273 * 119.99934 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99579 * 180.02562 * 15 14 13 18 18 C 1.46920 * 120.63360 * 5.31805 * 17 15 14 19 19 C 1.53200 * 108.77581 * 233.58761 * 18 17 15 20 20 C 1.53036 * 109.31317 * 305.36753 * 19 18 17 21 21 C 1.53078 * 109.65996 * 61.29929 * 20 19 18 22 22 C 1.46928 * 120.62645 * 185.29788 * 17 15 14 23 23 H 1.08991 * 109.58743 * 246.34048 * 22 17 15 24 24 C 1.53008 * 109.58764 * 6.62499 * 22 17 15 25 25 C 1.52992 * 109.47002 * 178.10516 * 24 22 17 26 26 H 1.09001 * 109.47397 * 64.85829 * 1 2 3 27 27 H 1.09002 * 109.46508 * 184.85707 * 1 2 3 28 28 H 1.08996 * 109.46979 * 304.85126 * 1 2 3 29 29 H 1.09002 * 109.46944 * 240.00839 * 2 1 3 30 30 H 1.08994 * 109.47696 * 120.00199 * 2 1 3 31 31 H 0.97002 * 119.99644 * 179.97438 * 8 7 5 32 32 H 1.00906 * 110.99900 * 333.33636 * 13 3 2 33 33 H 1.09002 * 109.46835 * 55.19700 * 14 13 3 34 34 H 1.08999 * 109.47387 * 295.19480 * 14 13 3 35 35 H 1.08999 * 109.58715 * 353.37545 * 18 17 15 36 36 H 1.09000 * 109.58615 * 113.80435 * 18 17 15 37 37 H 1.08997 * 109.49336 * 65.31805 * 19 18 17 38 38 H 1.08995 * 109.49786 * 185.37861 * 19 18 17 39 39 H 1.09002 * 109.45908 * 181.38348 * 20 19 18 40 40 H 1.09000 * 109.45951 * 301.35770 * 20 19 18 41 41 H 1.08995 * 109.62338 * 178.83479 * 21 20 19 42 42 H 1.09000 * 109.38880 * 58.72235 * 21 20 19 43 43 H 1.08996 * 109.46883 * 298.10868 * 24 22 17 44 44 H 1.08999 * 109.47160 * 58.10795 * 24 22 17 45 45 H 1.09007 * 109.47009 * 64.68111 * 25 24 22 46 46 H 1.09000 * 109.47545 * 184.67890 * 25 24 22 47 47 H 1.08995 * 109.47443 * 304.68095 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5946 1.9853 -0.8337 5 6 3.5401 1.4450 -0.1429 6 1 4.1553 1.8861 0.6275 7 6 4.1274 0.8841 -1.2571 8 7 3.3784 0.3474 -2.1954 9 14 5.9871 0.8866 -1.4339 10 1 6.5959 1.5455 -0.2505 11 1 6.4772 -0.5120 -1.5280 12 1 6.3664 1.6279 -2.6635 13 7 1.6673 2.0936 1.2630 14 6 1.4850 3.5392 1.0764 15 6 0.9903 4.1531 2.3608 16 8 0.8081 3.4551 3.3357 17 7 0.7505 5.4778 2.4259 18 6 0.8543 6.3173 1.2247 19 6 1.8027 7.4839 1.5189 20 6 1.3185 8.2277 2.7656 21 6 1.3308 7.2802 3.9679 22 6 0.3797 6.1096 3.6995 23 1 -0.6446 6.4772 3.6405 24 6 0.4932 5.0867 4.8317 25 6 0.1523 5.7595 6.1628 26 1 -0.3634 0.4366 -0.9303 27 1 -0.3632 -1.0240 0.0870 28 1 -0.3633 0.5872 0.8433 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.7917 -0.0469 -2.9794 32 1 0.8390 1.6724 1.6563 33 1 0.7556 3.7143 0.2855 34 1 2.4367 3.9928 0.7999 35 1 1.2482 5.7256 0.3983 36 1 -0.1306 6.7041 0.9630 37 1 2.8083 7.1006 1.6916 38 1 1.8145 8.1664 0.6691 39 1 1.9776 9.0731 2.9630 40 1 0.3033 8.5892 2.6015 41 1 1.0056 7.8160 4.8596 42 1 2.3414 6.9007 4.1191 43 1 -0.2012 4.2662 4.6510 44 1 1.5112 4.6993 4.8707 45 1 -0.8917 6.0732 6.1545 46 1 0.3132 5.0542 6.9782 47 1 0.7922 6.6304 6.3042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564734718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:41 Heat of formation + Delta-G solvation = -37.465329 kcal Electronic energy + Delta-G solvation = -23590.329731 eV Core-core repulsion = 20386.870997 eV Total energy + Delta-G solvation = -3203.458734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.37900 -37.43902 -36.01429 -34.28697 -32.79289 -32.31098 -31.01685 -29.42515 -27.40420 -25.80475 -24.41666 -23.99366 -22.54747 -21.13836 -20.78423 -19.60525 -18.71205 -16.59947 -16.20560 -16.05262 -15.33487 -14.74539 -14.64277 -14.55125 -14.45843 -13.76844 -13.70715 -13.57202 -13.23050 -12.86832 -12.72157 -12.36374 -12.14778 -12.00483 -11.97885 -11.69976 -11.36656 -11.16808 -11.14448 -11.02282 -10.84940 -10.77504 -10.59060 -10.57144 -10.51520 -9.94099 -9.78756 -9.62104 -9.09021 -8.62390 -8.42442 -8.32760 -7.20275 -5.95839 -3.99747 2.99562 3.12978 3.32026 3.40312 3.46131 4.45839 4.55324 4.67977 4.73429 4.91399 5.03202 5.18184 5.21624 5.28799 5.31712 5.41694 5.42885 5.54146 5.60778 5.61399 5.74252 5.79939 5.82729 5.92986 5.95671 5.97110 6.10726 6.14312 6.18240 6.20345 6.22621 6.43881 6.44446 6.51543 6.86318 6.87462 7.06260 7.17853 7.44015 7.61938 7.80390 7.94259 8.28419 8.40332 8.59267 8.77727 9.08940 9.65411 11.09462 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018242 B = 0.004459 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.516423 B = 6277.504321 C = 6964.564073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.491 4.491 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.670 5.670 14 C 0.052 3.948 15 C 0.515 3.485 16 O -0.521 6.521 17 N -0.618 5.618 18 C 0.107 3.893 19 C -0.137 4.137 20 C -0.119 4.119 21 C -0.133 4.133 22 C 0.149 3.851 23 H 0.064 0.936 24 C -0.116 4.116 25 C -0.160 4.160 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.101 0.899 30 H 0.042 0.958 31 H 0.258 0.742 32 H 0.328 0.672 33 H 0.043 0.957 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.212 14.917 8.132 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.022 0.978 5 C -0.530 4.530 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.304 5.304 14 C -0.081 4.081 15 C 0.305 3.695 16 O -0.397 6.397 17 N -0.354 5.354 18 C -0.016 4.016 19 C -0.175 4.175 20 C -0.156 4.156 21 C -0.171 4.171 22 C 0.046 3.954 23 H 0.082 0.918 24 C -0.154 4.154 25 C -0.218 4.218 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.119 0.881 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.636 14.479 8.691 18.144 hybrid contribution 0.210 0.176 -0.809 0.854 sum -6.426 14.655 7.882 17.838 Atomic orbital electron populations 1.21889 0.99580 0.99603 0.99756 1.21787 0.91280 1.00253 1.03210 1.19212 0.95628 0.90144 0.83866 0.97849 1.21273 0.91252 1.36420 1.04082 0.91972 1.24957 0.98073 0.95632 0.95875 1.69885 1.34553 1.39694 1.09551 0.86500 0.85835 0.77650 0.77779 1.19794 1.21124 1.21264 1.60509 1.40023 0.99123 1.30761 1.21828 1.00911 0.93148 0.92182 1.21107 0.76242 0.81070 0.91121 1.90665 1.50883 1.61140 1.36989 1.48221 1.70463 1.07532 1.09171 1.21737 0.99548 0.92639 0.87723 1.21926 0.99997 0.97296 0.98279 1.21517 1.01312 0.97893 0.94918 1.22069 1.00605 0.96384 0.98085 1.21233 0.97150 0.93256 0.83735 0.91802 1.22087 1.04557 0.97240 0.91482 1.22005 1.00765 1.00609 0.98372 0.93897 0.94329 0.94563 0.88100 0.93917 0.93160 0.85282 0.93973 0.88364 0.89077 0.91658 0.91161 0.90776 0.91873 0.92030 0.90826 0.91446 0.88813 0.91106 0.93338 0.92725 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.82 37.16 0.36 -2.63 16 2 C -0.13 -3.03 5.33 -26.73 -0.14 -3.18 16 3 C 0.22 5.45 2.03 -68.87 -0.14 5.31 16 4 H 0.00 0.10 7.66 -51.93 -0.40 -0.29 16 5 C -0.49 -13.54 8.79 -34.44 -0.30 -13.84 16 6 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.26 11.29 55.43 0.63 -24.63 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.67 -14.91 6.02 -109.22 -0.66 -15.56 16 14 C 0.05 0.97 4.40 -4.98 -0.02 0.95 16 15 C 0.52 8.89 7.56 -10.98 -0.08 8.81 16 16 O -0.52 -10.27 11.64 5.56 0.06 -10.20 16 17 N -0.62 -8.40 2.97 -165.22 -0.49 -8.89 16 18 C 0.11 1.16 6.35 -3.71 -0.02 1.14 16 19 C -0.14 -1.28 6.09 -26.61 -0.16 -1.45 16 20 C -0.12 -1.02 5.88 -26.67 -0.16 -1.18 16 21 C -0.13 -1.33 4.82 -26.59 -0.13 -1.46 16 22 C 0.15 1.79 3.03 -67.59 -0.20 1.59 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 C -0.12 -1.57 3.90 -26.73 -0.10 -1.68 16 25 C -0.16 -1.68 9.66 37.15 0.36 -1.32 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.67 6.38 -51.93 -0.33 0.34 16 29 H 0.10 2.68 5.94 -51.93 -0.31 2.37 16 30 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 32 H 0.33 7.09 5.97 -39.29 -0.23 6.86 16 33 H 0.04 0.74 7.52 -51.93 -0.39 0.35 16 34 H 0.10 1.89 7.91 -51.93 -0.41 1.48 16 35 H 0.09 1.04 5.93 -51.93 -0.31 0.73 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.63 6.63 -51.93 -0.34 0.28 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.49 6.25 -51.93 -0.32 1.17 16 44 H 0.07 1.14 7.23 -51.93 -0.38 0.76 16 45 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.48 6.29 -51.93 -0.33 0.15 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -29.56 353.25 -9.36 -38.93 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.37 Total: 6.16 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.84 Total: -7.52 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.52 Total: -49.08 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.06 Total: -10.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.56 -9.36 -38.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564734718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.461 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds