Wall clock time and date at job start Tue Mar 31 2020 05:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46931 * 2 1 4 4 H 1.08999 * 109.47482 * 54.77325 * 3 2 1 5 5 C 1.50699 * 109.47311 * 174.77511 * 3 2 1 6 6 H 1.07997 * 120.00416 * 119.99883 * 5 3 2 7 7 C 1.37877 * 119.99780 * 300.00175 * 5 3 2 8 8 N 1.31523 * 120.00052 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00132 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47425 * 59.99563 * 9 7 5 11 11 H 1.48504 * 109.47299 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47004 * 299.99480 * 9 7 5 13 13 N 1.46910 * 109.47178 * 294.77055 * 3 2 1 14 14 C 1.46896 * 110.99714 * 158.09909 * 13 3 2 15 15 C 1.50706 * 109.46907 * 175.68011 * 14 13 3 16 16 O 1.21287 * 119.99905 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00234 * 180.02562 * 15 14 13 18 18 C 1.46927 * 120.62988 * 5.14913 * 17 15 14 19 19 C 1.53188 * 108.89661 * 126.46139 * 18 17 15 20 20 C 1.53043 * 109.31547 * 54.56020 * 19 18 17 21 21 C 1.53040 * 109.53521 * 298.63829 * 20 19 18 22 22 C 1.46965 * 120.65777 * 184.95991 * 17 15 14 23 23 H 1.08999 * 109.46268 * 113.75168 * 22 17 15 24 24 C 1.53008 * 109.70792 * 353.46833 * 22 17 15 25 25 C 1.53000 * 109.46877 * 178.95277 * 24 22 17 26 26 H 1.09003 * 109.46814 * 185.06594 * 1 2 3 27 27 H 1.08997 * 109.46823 * 305.05900 * 1 2 3 28 28 H 1.08995 * 109.47585 * 65.06706 * 1 2 3 29 29 H 1.09005 * 109.47030 * 240.00051 * 2 1 3 30 30 H 1.09001 * 109.47437 * 119.99843 * 2 1 3 31 31 H 0.96992 * 119.99908 * 180.02562 * 8 7 5 32 32 H 1.00895 * 110.99686 * 282.05808 * 13 3 2 33 33 H 1.09007 * 109.47182 * 55.68610 * 14 13 3 34 34 H 1.08996 * 109.47790 * 295.68199 * 14 13 3 35 35 H 1.09002 * 109.58898 * 6.59957 * 18 17 15 36 36 H 1.09007 * 109.58379 * 246.31954 * 18 17 15 37 37 H 1.08998 * 109.49886 * 174.51760 * 19 18 17 38 38 H 1.08996 * 109.49597 * 294.61065 * 19 18 17 39 39 H 1.09002 * 109.45406 * 58.65605 * 20 19 18 40 40 H 1.08999 * 109.46280 * 178.62817 * 20 19 18 41 41 H 1.08999 * 109.49492 * 181.30968 * 21 20 19 42 42 H 1.08994 * 109.49935 * 301.37740 * 21 20 19 43 43 H 1.08999 * 109.47087 * 298.95635 * 24 22 17 44 44 H 1.09004 * 109.46890 * 58.95064 * 24 22 17 45 45 H 1.08997 * 109.46990 * 185.52577 * 25 24 22 46 46 H 1.08995 * 109.46988 * 305.52550 * 25 24 22 47 47 H 1.09004 * 109.46786 * 65.52679 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9827 0.8394 5 6 3.5414 1.4446 0.1294 6 1 4.1496 1.8881 -0.6450 7 6 4.1386 0.8801 1.2365 8 7 3.3980 0.3403 2.1798 9 14 5.9997 0.8833 1.3973 10 1 6.4942 2.2835 1.3976 11 1 6.3878 0.2214 2.6688 12 1 6.5966 0.1477 0.2536 13 7 1.6560 2.0976 -1.2576 14 6 1.6480 3.5590 -1.1088 15 6 1.3544 4.1981 -2.4417 16 8 1.1696 3.5043 -3.4192 17 7 1.2972 5.5404 -2.5475 18 6 1.6289 6.3965 -1.4003 19 6 2.6986 7.4063 -1.8278 20 6 2.2102 8.1696 -3.0611 21 6 1.9839 7.1885 -4.2137 22 6 0.9060 6.1764 -3.8133 23 1 -0.0467 6.6895 -3.6827 24 6 0.7704 5.1128 -4.9048 25 6 0.3377 5.7772 -6.2133 26 1 -0.3633 -1.0237 0.0907 27 1 -0.3633 0.5903 0.8412 28 1 -0.3634 0.4332 -0.9318 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8182 -0.0564 2.9588 32 1 2.2624 1.8143 -2.0126 33 1 2.6224 3.8933 -0.7523 34 1 0.8801 3.8470 -0.3908 35 1 2.0110 5.7827 -0.5846 36 1 0.7359 6.9277 -1.0706 37 1 2.8820 8.1083 -1.0144 38 1 3.6215 6.8786 -2.0684 39 1 1.2743 8.6769 -2.8270 40 1 2.9592 8.9057 -3.3528 41 1 1.6584 7.7357 -5.0984 42 1 2.9136 6.6633 -4.4323 43 1 1.7298 4.6161 -5.0493 44 1 0.0225 4.3784 -4.6055 45 1 0.1461 5.0106 -6.9641 46 1 -0.5708 6.3552 -6.0442 47 1 1.1296 6.4392 -6.5638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564734719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:44 Heat of formation + Delta-G solvation = -42.814115 kcal Electronic energy + Delta-G solvation = -23602.435719 eV Core-core repulsion = 20398.745044 eV Total energy + Delta-G solvation = -3203.690674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34579 -37.38297 -35.88104 -34.25050 -32.78975 -32.29211 -31.01364 -29.44394 -27.40393 -25.64925 -24.37222 -23.92202 -22.44716 -21.13489 -20.80178 -19.55458 -18.66854 -16.82262 -16.28737 -15.91561 -15.43305 -14.77630 -14.62895 -14.54701 -14.16467 -13.86362 -13.54664 -13.37964 -13.12463 -12.93918 -12.68815 -12.36941 -12.10833 -11.92662 -11.76300 -11.67762 -11.22860 -11.17415 -11.13345 -11.04575 -10.91239 -10.78665 -10.65043 -10.52747 -10.50848 -10.16558 -9.61818 -9.55648 -9.10285 -8.63252 -8.39319 -8.35774 -7.24415 -6.00685 -4.14788 3.04718 3.14458 3.26494 3.32166 3.34844 4.37817 4.57206 4.69066 4.72851 4.93383 5.04598 5.19716 5.21998 5.25640 5.31750 5.42378 5.46812 5.57442 5.63526 5.63878 5.76272 5.78519 5.83749 5.92539 5.95514 6.01925 6.14119 6.18470 6.22110 6.44041 6.45161 6.53114 6.55370 6.75596 6.87801 7.13075 7.22249 7.41760 7.55828 7.66230 7.77490 8.08111 8.14075 8.30612 8.57892 8.69278 8.98111 9.53156 10.98657 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.004613 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.823507 B = 6068.618680 C = 6927.973554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.549 4.549 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.673 5.673 14 C 0.049 3.951 15 C 0.515 3.485 16 O -0.522 6.522 17 N -0.618 5.618 18 C 0.107 3.893 19 C -0.136 4.136 20 C -0.119 4.119 21 C -0.132 4.132 22 C 0.149 3.851 23 H 0.064 0.936 24 C -0.112 4.112 25 C -0.159 4.159 26 H 0.024 0.976 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.031 0.969 30 H 0.091 0.909 31 H 0.262 0.738 32 H 0.337 0.663 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.216 15.066 -8.713 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.588 4.588 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.304 5.304 14 C -0.083 4.083 15 C 0.304 3.696 16 O -0.397 6.397 17 N -0.354 5.354 18 C -0.016 4.016 19 C -0.174 4.174 20 C -0.157 4.157 21 C -0.171 4.171 22 C 0.046 3.954 23 H 0.082 0.918 24 C -0.149 4.149 25 C -0.217 4.217 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.992 14.499 -8.919 17.740 hybrid contribution 2.135 0.379 0.338 2.195 sum -2.856 14.878 -8.581 17.411 Atomic orbital electron populations 1.21692 0.98912 0.98328 1.00449 1.21480 0.92204 0.98964 1.01745 1.19187 0.92767 0.91397 0.85853 0.94906 1.21838 0.92808 1.38671 1.05475 0.92980 1.24917 0.97854 0.94889 0.95672 1.69869 1.34887 1.38085 1.09339 0.86727 0.86098 0.78167 0.77403 1.20446 1.21195 1.20262 1.60760 1.58313 1.01896 1.09426 1.21746 1.01242 0.92497 0.92861 1.21131 0.75658 0.81065 0.91702 1.90683 1.48416 1.62375 1.38269 1.48221 1.69354 1.05736 1.12093 1.21724 0.97986 0.93205 0.88735 1.21920 0.99047 0.98235 0.98247 1.21515 1.01202 0.97665 0.95271 1.22042 0.99723 0.97194 0.98115 1.21274 0.96359 0.93840 0.83928 0.91755 1.22071 1.04336 0.96444 0.92099 1.21992 1.00601 1.00579 0.98531 0.95641 0.94475 0.93353 0.95001 0.89066 0.92783 0.84529 0.92415 0.89582 0.89049 0.91643 0.90766 0.91360 0.91951 0.91933 0.90973 0.91553 0.90849 0.89243 0.92728 0.93324 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.74 37.16 0.36 -2.53 16 2 C -0.11 -2.56 5.45 -26.73 -0.15 -2.70 16 3 C 0.22 5.31 1.96 -68.86 -0.13 5.17 16 4 H 0.03 0.87 7.90 -51.93 -0.41 0.46 16 5 C -0.55 -14.59 8.17 -34.44 -0.28 -14.87 16 6 H 0.05 1.39 7.78 -52.49 -0.41 0.98 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -24.57 11.29 55.43 0.63 -23.94 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.67 -14.67 5.49 -109.21 -0.60 -15.27 16 14 C 0.05 0.92 4.38 -4.98 -0.02 0.89 16 15 C 0.52 8.88 7.64 -10.98 -0.08 8.79 16 16 O -0.52 -10.25 11.53 5.55 0.06 -10.19 16 17 N -0.62 -8.45 2.98 -165.18 -0.49 -8.95 16 18 C 0.11 1.18 6.32 -3.71 -0.02 1.16 16 19 C -0.14 -1.31 6.08 -26.61 -0.16 -1.47 16 20 C -0.12 -1.04 5.88 -26.69 -0.16 -1.20 16 21 C -0.13 -1.33 4.90 -26.61 -0.13 -1.46 16 22 C 0.15 1.80 2.99 -67.58 -0.20 1.60 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 C -0.11 -1.51 3.86 -26.73 -0.10 -1.62 16 25 C -0.16 -1.68 9.44 37.16 0.35 -1.33 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.01 7.90 -51.93 -0.41 0.60 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.34 7.70 8.03 -39.29 -0.32 7.38 16 33 H 0.06 1.10 7.13 -51.93 -0.37 0.73 16 34 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 35 H 0.09 1.07 5.96 -51.93 -0.31 0.76 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.62 6.91 -51.93 -0.36 0.27 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.16 7.13 -51.93 -0.37 0.79 16 44 H 0.09 1.45 6.36 -51.93 -0.33 1.11 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.05 0.47 6.91 -51.93 -0.36 0.11 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -28.45 356.36 -9.46 -37.91 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -8.58 Total: 7.00 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -0.83 Total: -7.78 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.47 Total: -48.15 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.06 Total: -10.19 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.45 -9.46 -37.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564734719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.906 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds