Wall clock time and date at job start Tue Mar 31 2020 05:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47396 * 2 1 4 4 H 1.09003 * 109.46655 * 54.77222 * 3 2 1 5 5 C 1.50701 * 109.46914 * 174.77145 * 3 2 1 6 6 H 1.08002 * 119.99504 * 120.00475 * 5 3 2 7 7 C 1.37876 * 119.99936 * 299.99808 * 5 3 2 8 8 N 1.31515 * 120.00384 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99592 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47211 * 60.00310 * 9 7 5 11 11 H 1.48497 * 109.46910 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47602 * 300.00055 * 9 7 5 13 13 N 1.46899 * 109.47255 * 294.77313 * 3 2 1 14 14 C 1.46897 * 111.00012 * 159.60731 * 13 3 2 15 15 C 1.50703 * 109.47135 * 175.13207 * 14 13 3 16 16 O 1.21285 * 119.99745 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00317 * 180.02562 * 15 14 13 18 18 C 1.46933 * 120.62777 * 5.09693 * 17 15 14 19 19 C 1.52761 * 109.00648 * 233.58511 * 18 17 15 20 20 C 1.53045 * 109.38105 * 305.58505 * 19 18 17 21 21 C 1.53043 * 109.53479 * 61.24261 * 20 19 18 22 22 C 1.46919 * 120.63243 * 185.37375 * 17 15 14 23 23 H 1.09003 * 109.58802 * 246.29764 * 22 17 15 24 24 C 1.52999 * 109.58902 * 6.58350 * 22 17 15 25 25 C 1.52998 * 109.47555 * 178.39514 * 24 22 17 26 26 H 1.09003 * 109.46533 * 65.00053 * 1 2 3 27 27 H 1.09000 * 109.47380 * 184.99839 * 1 2 3 28 28 H 1.08997 * 109.47532 * 305.00570 * 1 2 3 29 29 H 1.09005 * 109.47328 * 239.99903 * 2 1 3 30 30 H 1.09002 * 109.46762 * 119.99873 * 2 1 3 31 31 H 0.96996 * 119.99709 * 180.02562 * 8 7 5 32 32 H 1.00904 * 110.99880 * 283.56660 * 13 3 2 33 33 H 1.08996 * 109.46919 * 295.13328 * 14 13 3 34 34 H 1.08998 * 109.46980 * 55.13533 * 14 13 3 35 35 H 1.09001 * 109.58376 * 353.41765 * 18 17 15 36 36 H 1.08994 * 109.58537 * 113.84083 * 18 17 15 37 37 H 1.08997 * 109.56059 * 185.55529 * 19 18 17 38 38 H 1.08993 * 109.38740 * 65.51185 * 19 18 17 39 39 H 1.09000 * 109.46361 * 301.22352 * 20 19 18 40 40 H 1.08996 * 109.44741 * 181.25485 * 20 19 18 41 41 H 1.09006 * 109.49510 * 178.68057 * 21 20 19 42 42 H 1.08998 * 109.52351 * 58.60313 * 21 20 19 43 43 H 1.09000 * 109.47115 * 298.40052 * 24 22 17 44 44 H 1.09005 * 109.46772 * 58.39706 * 24 22 17 45 45 H 1.09001 * 109.47200 * 184.85207 * 25 24 22 46 46 H 1.09005 * 109.46883 * 304.85686 * 25 24 22 47 47 H 1.09002 * 109.46499 * 64.85095 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9826 0.8395 5 6 3.5415 1.4443 0.1295 6 1 4.1497 1.8879 -0.6450 7 6 4.1386 0.8799 1.2366 8 7 3.3980 0.3394 2.1795 9 14 5.9997 0.8829 1.3974 10 1 6.4943 2.2830 1.3977 11 1 6.3878 0.2200 2.6683 12 1 6.5966 0.1474 0.2537 13 7 1.6562 2.0976 -1.2575 14 6 1.6828 3.5598 -1.1188 15 6 1.4013 4.1964 -2.4555 16 8 1.1979 3.5005 -3.4278 17 7 1.3755 5.5390 -2.5705 18 6 1.7288 6.3949 -1.4297 19 6 0.5954 7.3892 -1.1839 20 6 0.3014 8.1539 -2.4766 21 6 -0.1427 7.1713 -3.5627 22 6 0.9877 6.1745 -3.8371 23 1 1.8447 6.6982 -4.2606 24 6 0.5025 5.1065 -4.8194 25 6 0.0617 5.7751 -6.1231 26 1 -0.3632 0.4343 -0.9314 27 1 -0.3634 -1.0237 0.0895 28 1 -0.3634 0.5895 0.8417 29 1 1.8934 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8182 -0.0573 2.9585 32 1 2.2470 1.7956 -2.0177 33 1 0.9236 3.8706 -0.4012 34 1 2.6656 3.8735 -0.7669 35 1 1.8720 5.7793 -0.5416 36 1 2.6468 6.9389 -1.6516 37 1 0.8892 8.0920 -0.4043 38 1 -0.2977 6.8493 -0.8694 39 1 1.2017 8.6740 -2.8037 40 1 -0.4920 8.8793 -2.2967 41 1 -0.3744 7.7191 -4.4761 42 1 -1.0289 6.6330 -3.2266 43 1 1.3129 4.4074 -5.0255 44 1 -0.3397 4.5685 -4.3842 45 1 -0.3637 5.0254 -6.7901 46 1 -0.6882 6.5358 -5.9058 47 1 0.9233 6.2406 -6.6019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564734720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:47 Heat of formation + Delta-G solvation = -42.248826 kcal Electronic energy + Delta-G solvation = -23594.076118 eV Core-core repulsion = 20390.409956 eV Total energy + Delta-G solvation = -3203.666162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.35921 -37.40493 -35.88629 -34.27517 -32.78003 -32.29304 -31.02019 -29.43977 -27.40295 -25.65760 -24.37863 -23.96032 -22.44877 -21.12266 -20.76207 -19.56808 -18.68873 -16.75644 -16.44270 -15.93556 -15.25349 -14.77580 -14.61151 -14.53587 -14.31462 -13.74609 -13.61008 -13.52065 -13.17643 -12.84431 -12.71471 -12.34129 -12.03935 -11.96468 -11.80946 -11.63482 -11.24548 -11.14693 -11.13553 -11.02986 -10.91398 -10.77295 -10.63819 -10.57377 -10.51021 -10.15963 -9.61585 -9.56162 -9.10951 -8.59927 -8.40191 -8.38062 -7.24542 -6.00474 -4.14714 3.04031 3.15153 3.26727 3.32378 3.35078 4.37983 4.56251 4.67943 4.73167 4.92635 5.04449 5.19584 5.22318 5.25475 5.30239 5.43764 5.46601 5.59411 5.62162 5.62414 5.75439 5.80462 5.82571 5.91883 5.95848 6.01235 6.14470 6.16865 6.22763 6.43679 6.44348 6.53142 6.55091 6.75382 6.88509 7.13239 7.22016 7.41306 7.55974 7.66236 7.77538 8.07855 8.14380 8.30604 8.58086 8.69426 8.98091 9.53308 10.98743 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.004360 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.749821 B = 6419.919706 C = 6892.508365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.549 4.549 6 H 0.052 0.948 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.673 5.673 14 C 0.049 3.951 15 C 0.516 3.484 16 O -0.522 6.522 17 N -0.618 5.618 18 C 0.107 3.893 19 C -0.136 4.136 20 C -0.119 4.119 21 C -0.133 4.133 22 C 0.149 3.851 23 H 0.064 0.936 24 C -0.116 4.116 25 C -0.160 4.160 26 H 0.047 0.953 27 H 0.024 0.976 28 H 0.036 0.964 29 H 0.031 0.969 30 H 0.091 0.909 31 H 0.262 0.738 32 H 0.337 0.663 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 15.048 -8.224 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.588 4.588 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.304 5.304 14 C -0.083 4.083 15 C 0.305 3.695 16 O -0.398 6.398 17 N -0.354 5.354 18 C -0.017 4.017 19 C -0.175 4.175 20 C -0.157 4.157 21 C -0.171 4.171 22 C 0.046 3.954 23 H 0.082 0.918 24 C -0.153 4.153 25 C -0.218 4.218 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.113 0.887 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.600 14.496 -8.424 18.018 hybrid contribution 2.063 0.357 0.350 2.122 sum -4.537 14.853 -8.074 17.504 Atomic orbital electron populations 1.21692 0.98909 0.98326 1.00456 1.21482 0.92205 0.98965 1.01762 1.19185 0.92750 0.91377 0.85893 0.94888 1.21842 0.92833 1.38679 1.05480 0.92970 1.24916 0.97857 0.94882 0.95671 1.69867 1.34894 1.38061 1.09360 0.86725 0.86095 0.78171 0.77398 1.20431 1.21206 1.20267 1.60773 1.59103 1.01386 1.09142 1.21736 1.01287 0.92539 0.92786 1.21134 0.75573 0.81078 0.91677 1.90663 1.48318 1.62186 1.38641 1.48216 1.69126 1.05723 1.12334 1.21645 0.97133 0.93270 0.89614 1.21855 0.99459 0.98341 0.97799 1.21517 1.01263 0.97662 0.95235 1.22057 0.98738 0.97278 0.99004 1.21233 0.96132 0.93933 0.84117 0.91783 1.22091 1.03408 0.96558 0.93290 1.22008 1.00750 1.00599 0.98401 0.93360 0.95639 0.94466 0.95006 0.89046 0.92784 0.84532 0.89605 0.92360 0.89029 0.91640 0.90775 0.91343 0.91964 0.91906 0.90881 0.91509 0.88682 0.91232 0.92742 0.93095 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.74 37.16 0.36 -2.53 16 2 C -0.11 -2.56 5.45 -26.73 -0.15 -2.71 16 3 C 0.22 5.31 1.96 -68.86 -0.13 5.17 16 4 H 0.03 0.88 7.93 -51.93 -0.41 0.47 16 5 C -0.55 -14.60 8.10 -34.44 -0.28 -14.88 16 6 H 0.05 1.39 7.80 -52.49 -0.41 0.98 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -24.57 11.29 55.43 0.63 -23.94 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.67 -14.67 5.50 -109.22 -0.60 -15.27 16 14 C 0.05 0.92 4.34 -4.98 -0.02 0.90 16 15 C 0.52 8.91 7.56 -10.99 -0.08 8.83 16 16 O -0.52 -10.28 11.64 5.55 0.06 -10.22 16 17 N -0.62 -8.48 2.98 -165.48 -0.49 -8.97 16 18 C 0.11 1.19 6.32 -3.93 -0.02 1.16 16 19 C -0.14 -1.25 6.07 -26.83 -0.16 -1.42 16 20 C -0.12 -1.01 5.89 -26.69 -0.16 -1.17 16 21 C -0.13 -1.30 4.82 -26.61 -0.13 -1.43 16 22 C 0.15 1.80 3.03 -67.60 -0.20 1.60 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 C -0.12 -1.57 3.89 -26.73 -0.10 -1.67 16 25 C -0.16 -1.68 9.68 37.16 0.36 -1.32 16 26 H 0.05 1.01 7.90 -51.93 -0.41 0.60 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.34 7.69 8.04 -39.29 -0.32 7.38 16 33 H 0.09 1.52 7.90 -51.93 -0.41 1.11 16 34 H 0.06 1.12 7.32 -51.93 -0.38 0.74 16 35 H 0.09 1.06 5.93 -51.93 -0.31 0.75 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.62 6.64 -51.93 -0.34 0.27 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.54 6.23 -51.93 -0.32 1.22 16 44 H 0.07 1.09 7.25 -51.93 -0.38 0.71 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.47 6.29 -51.93 -0.33 0.14 16 47 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -28.45 355.60 -9.42 -37.87 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -8.53 Total: 7.02 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -0.82 Total: -7.70 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.47 Total: -48.18 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.06 Total: -10.22 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.45 -9.42 -37.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564734720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.379 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds