Wall clock time and date at job start Tue Mar 31 2020 05:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.53001 * 109.47279 * 65.00040 * 3 2 1 6 6 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 7 7 H 1.09007 * 109.46964 * 60.00529 * 6 3 2 8 8 N 1.46898 * 109.47347 * 300.00191 * 6 3 2 9 9 C 1.50701 * 109.47161 * 180.02562 * 6 3 2 10 10 O 1.21274 * 120.00512 * 100.00594 * 9 6 3 11 11 N 1.34783 * 119.99974 * 280.00019 * 9 6 3 12 12 C 1.46927 * 120.63041 * 359.72027 * 11 9 6 13 13 C 1.52763 * 109.00977 * 233.58462 * 12 11 9 14 14 C 1.53034 * 109.38134 * 305.58592 * 13 12 11 15 15 C 1.53006 * 109.44959 * 181.25308 * 14 13 12 16 16 C 1.50697 * 109.46803 * 64.94147 * 15 14 13 17 17 H 1.08003 * 120.00153 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99893 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00209 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00224 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47046 * 59.99661 * 20 18 16 22 22 H 1.48496 * 109.47290 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47175 * 300.00424 * 20 18 16 24 24 C 1.53047 * 109.53815 * 61.24180 * 14 13 12 25 25 C 1.46925 * 120.63243 * 180.02562 * 11 9 6 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09000 * 109.47104 * 59.99686 * 5 3 2 32 32 H 1.08993 * 109.47832 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.46924 * 300.00271 * 5 3 2 34 34 H 1.00896 * 111.00104 * 299.99972 * 8 6 3 35 35 H 1.00898 * 110.99899 * 63.95386 * 8 6 3 36 36 H 1.09004 * 109.58348 * 353.41969 * 12 11 9 37 37 H 1.08998 * 109.58507 * 113.84108 * 12 11 9 38 38 H 1.08996 * 109.56091 * 185.55314 * 13 12 11 39 39 H 1.08998 * 109.36133 * 65.49994 * 13 12 11 40 40 H 1.09001 * 109.46445 * 301.22183 * 14 13 12 41 41 H 1.08994 * 109.47046 * 184.94254 * 15 14 13 42 42 H 1.08994 * 109.46722 * 304.94304 * 15 14 13 43 43 H 0.96995 * 119.99992 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.49863 * 178.68137 * 24 14 13 45 45 H 1.09000 * 109.49474 * 58.58305 * 24 14 13 46 46 H 1.08997 * 109.58583 * 246.15989 * 25 11 9 47 47 H 1.09003 * 109.58404 * 6.44038 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1257 7 1 3.8532 0.9569 -1.0571 8 7 4.1506 0.7177 1.0088 9 6 4.0672 2.8650 -0.1250 10 8 4.5258 3.3457 0.8896 11 7 4.0071 3.6016 -1.2522 12 6 3.4601 3.0313 -2.4908 13 6 4.4802 3.2099 -3.6138 14 6 4.8666 4.6870 -3.7187 15 6 5.8647 4.8725 -4.8634 16 6 5.1955 4.5401 -6.1721 17 1 4.1618 4.2273 -6.1859 18 6 5.9031 4.6342 -7.3516 19 7 7.1622 5.0135 -7.3347 20 14 5.0738 4.2214 -8.9738 21 1 3.9121 5.1233 -9.1794 22 1 6.0428 4.4004 -10.0848 23 1 4.6073 2.8118 -8.9467 24 6 5.5066 5.1431 -2.4053 25 6 4.4935 4.9879 -1.2674 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.0699 1.5874 2.1492 32 1 1.9983 3.1542 1.3072 33 1 0.5490 2.1252 1.3969 34 1 3.8977 1.1503 1.8846 35 1 3.8802 -0.2542 0.9942 36 1 3.2595 1.9696 -2.3468 37 1 2.5368 3.5473 -2.7541 38 1 4.0458 2.8797 -4.5574 39 1 5.3675 2.6164 -3.3938 40 1 3.9750 5.2827 -3.9142 41 1 6.2070 5.9071 -4.8829 42 1 6.7173 4.2104 -4.7128 43 1 7.6599 5.0801 -8.1646 44 1 5.8028 6.1887 -2.4888 45 1 6.3843 4.5313 -2.1967 46 1 3.6563 5.6671 -1.4286 47 1 4.9722 5.2176 -0.3154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565002457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:03 Heat of formation + Delta-G solvation = -66.936863 kcal Electronic energy + Delta-G solvation = -23486.316616 eV Core-core repulsion = 20281.579901 eV Total energy + Delta-G solvation = -3204.736715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45150 -37.97518 -36.83465 -33.98922 -32.97063 -32.13373 -30.83900 -29.59248 -28.18514 -26.62393 -24.95267 -23.88399 -22.79586 -21.68798 -20.26277 -19.52142 -18.53665 -17.37527 -16.30242 -16.01349 -15.82470 -15.37810 -14.94860 -14.58044 -14.45242 -14.02844 -13.87159 -13.58966 -13.45526 -12.94677 -12.88379 -12.76834 -12.39597 -12.21099 -12.12035 -11.79930 -11.60952 -11.44361 -11.19503 -11.06380 -11.01068 -10.91615 -10.77260 -10.68967 -10.46523 -10.13134 -9.74002 -9.51375 -9.25592 -8.98335 -8.80031 -8.36614 -8.31537 -6.00566 -4.02924 2.75513 3.12570 3.30858 3.36414 3.37529 4.34500 4.40711 4.44045 4.50210 4.57809 4.85072 4.93472 5.11890 5.16767 5.18732 5.32649 5.34506 5.39614 5.42212 5.49121 5.54866 5.63245 5.63518 5.69238 5.72757 5.76470 5.78842 5.98091 5.99300 6.05514 6.08902 6.38262 6.39178 6.51962 6.68027 6.90302 6.96357 6.99281 7.10441 7.29489 7.61238 7.66057 7.81211 7.99124 8.34999 8.41090 9.03433 9.60863 11.10680 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.003905 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.799200 B = 7169.064263 C = 7980.762550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.124 4.124 4 H 0.082 0.918 5 C -0.151 4.151 6 C 0.077 3.923 7 H 0.104 0.896 8 N -0.827 5.827 9 C 0.524 3.476 10 O -0.542 6.542 11 N -0.604 5.604 12 C 0.102 3.898 13 C -0.120 4.120 14 C -0.080 4.080 15 C 0.028 3.972 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.129 4.129 25 C 0.113 3.887 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.349 0.651 35 H 0.344 0.656 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.261 0.739 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 -8.546 14.793 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.145 4.145 4 H 0.100 0.900 5 C -0.208 4.208 6 C -0.038 4.038 7 H 0.121 0.879 8 N -0.359 5.359 9 C 0.312 3.688 10 O -0.419 6.419 11 N -0.338 5.338 12 C -0.020 4.020 13 C -0.158 4.158 14 C -0.099 4.099 15 C -0.009 4.009 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.168 4.168 25 C -0.009 4.009 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.343 -8.056 14.911 20.394 hybrid contribution -1.337 -0.372 -0.928 1.669 sum -12.680 -8.428 13.983 20.672 Atomic orbital electron populations 1.21799 0.95376 1.01673 1.02123 1.21578 0.96498 0.95530 1.02136 1.21907 0.95319 0.97320 0.99926 0.89988 1.21891 1.01435 1.01054 0.96461 1.21461 0.92217 0.93065 0.97030 0.87852 1.58563 1.66031 1.05909 1.05439 1.20309 0.78199 0.87303 0.83014 1.90637 1.46134 1.72590 1.32548 1.48139 1.61634 1.13870 1.10124 1.21904 0.97443 0.98188 0.84514 1.21837 0.98207 0.98529 0.97271 1.21182 0.99766 0.94256 0.94648 1.19119 0.93618 0.97057 0.91141 1.21194 0.97547 1.45296 0.91527 0.92674 1.25019 0.94835 0.95437 0.99119 1.69953 1.08522 1.47688 1.27286 0.86711 0.79215 0.78875 0.83496 1.20309 1.21358 1.20289 1.22016 0.98004 1.01755 0.94976 1.21637 0.97587 0.81264 1.00448 0.92495 0.92507 0.92689 0.92027 0.91454 0.92659 0.92120 0.92093 0.83482 0.84183 0.90520 0.91560 0.89672 0.92224 0.92392 0.96606 0.96615 0.92972 0.91169 0.92043 0.91981 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.65 16 2 C -0.12 -0.84 4.93 -26.74 -0.13 -0.98 16 3 C -0.12 -1.10 2.06 -90.62 -0.19 -1.29 16 4 H 0.08 0.76 7.16 -51.93 -0.37 0.39 16 5 C -0.15 -1.40 8.36 37.16 0.31 -1.09 16 6 C 0.08 0.87 2.18 -68.87 -0.15 0.72 16 7 H 0.10 1.13 6.53 -51.92 -0.34 0.79 16 8 N -0.83 -8.90 8.82 -5.65 -0.05 -8.95 16 9 C 0.52 7.76 5.80 -10.98 -0.06 7.70 16 10 O -0.54 -9.67 15.36 5.56 0.09 -9.59 16 11 N -0.60 -8.80 2.98 -173.06 -0.52 -9.31 16 12 C 0.10 1.36 5.59 -3.93 -0.02 1.34 16 13 C -0.12 -2.04 5.17 -26.84 -0.14 -2.18 16 14 C -0.08 -1.53 2.10 -90.57 -0.19 -1.72 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 16 C -0.52 -13.92 8.39 -34.44 -0.29 -14.21 16 17 H 0.06 1.42 7.06 -52.48 -0.37 1.05 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 20 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.13 -2.21 5.36 -26.63 -0.14 -2.35 16 25 C 0.11 1.71 6.43 -3.73 -0.02 1.69 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.39 7.03 -51.93 -0.37 0.03 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.48 6.67 -51.93 -0.35 0.14 16 32 H 0.06 0.70 7.00 -51.93 -0.36 0.34 16 33 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 34 H 0.35 3.83 6.75 -39.29 -0.27 3.57 16 35 H 0.34 2.80 7.52 -39.29 -0.30 2.51 16 36 H 0.08 0.85 5.14 -51.93 -0.27 0.58 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.52 6.91 -51.93 -0.36 1.16 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.08 1.34 7.00 -51.93 -0.36 0.97 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -31.03 353.02 -8.51 -39.54 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.17 Total: 3.68 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.89 Total: -10.97 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.17 Total: -44.07 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.03 -8.51 -39.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565002457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.397 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds