Wall clock time and date at job start Tue Mar 31 2020 06:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47402 * 2 1 4 4 N 1.46905 * 109.47089 * 120.00152 * 2 1 3 5 5 C 1.46898 * 111.00104 * 84.99976 * 4 2 1 6 6 C 1.53003 * 109.47037 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.46931 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 C 1.50701 * 109.47085 * 295.13082 * 13 12 11 15 15 H 1.07998 * 120.00293 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99472 * 179.97438 * 14 13 12 17 17 N 1.31505 * 120.00682 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99519 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47133 * 60.00060 * 18 16 14 20 20 H 1.48503 * 109.46942 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47295 * 299.99976 * 18 16 14 22 22 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 23 23 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 24 24 H 1.09001 * 109.47214 * 300.00173 * 1 2 3 25 25 H 1.09001 * 109.47346 * 59.99855 * 1 2 3 26 26 H 1.08995 * 109.47263 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47214 * 239.99827 * 2 1 3 28 28 H 1.08995 * 109.47677 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46989 * 300.00363 * 3 2 1 30 30 H 1.09001 * 109.47077 * 59.99743 * 3 2 1 31 31 H 1.00903 * 110.99583 * 321.04148 * 4 2 1 32 32 H 1.08996 * 109.47157 * 60.00029 * 5 4 2 33 33 H 1.09001 * 109.47136 * 299.99977 * 5 4 2 34 34 H 1.09001 * 109.46646 * 59.99863 * 6 5 4 35 35 H 1.09001 * 109.47188 * 300.00006 * 6 5 4 36 36 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 37 37 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 38 38 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 39 39 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 40 40 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 41 41 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 42 42 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 43 43 H 0.97001 * 120.00836 * 179.97438 * 17 16 14 44 44 H 1.08994 * 109.50232 * 301.42239 * 22 12 11 45 45 H 1.09007 * 109.52628 * 181.33900 * 22 12 11 46 46 H 1.08994 * 109.58580 * 353.38021 * 23 9 7 47 47 H 1.09006 * 109.57831 * 113.65514 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0824 -2.1438 0.9807 6 6 2.5962 -2.8289 2.2486 7 6 2.6600 -4.3178 2.0244 8 8 2.3278 -4.7848 0.9555 9 7 3.0863 -5.1303 3.0116 10 6 3.1535 -6.5838 2.8083 11 6 4.5651 -7.0683 3.1540 12 6 4.9196 -6.6123 4.5745 13 6 6.3158 -7.1213 4.9387 14 6 6.3035 -8.6273 4.9912 15 1 5.3911 -9.1674 4.7859 16 6 7.4572 -9.3156 5.3014 17 7 8.5681 -8.6580 5.5520 18 14 7.4418 -11.1824 5.3672 19 1 7.0482 -11.7213 4.0406 20 1 8.7970 -11.6764 5.7206 21 1 6.4679 -11.6336 6.3935 22 6 4.9003 -5.0836 4.6430 23 6 3.4916 -4.5793 4.3120 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.4495 -0.4721 2.0023 32 1 2.7588 -2.3575 0.1531 33 1 1.0870 -2.5187 0.7425 34 1 1.9201 -2.6151 3.0764 35 1 3.5917 -2.4539 2.4863 36 1 2.4289 -7.0773 3.4560 37 1 2.9317 -6.8177 1.7671 38 1 4.6002 -8.1563 3.0982 39 1 5.2786 -6.6440 2.4475 40 1 4.1910 -7.0164 5.2774 41 1 7.0310 -6.7897 4.1860 42 1 6.6040 -6.7260 5.9127 43 1 9.3797 -9.1422 5.7706 44 1 5.6108 -4.6781 3.9227 45 1 5.1756 -4.7603 5.6470 46 1 3.4952 -3.4905 4.2624 47 1 2.7930 -4.9077 5.0816 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566259330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:28 Heat of formation + Delta-G solvation = -67.295866 kcal Electronic energy + Delta-G solvation = -22393.009776 eV Core-core repulsion = 19188.257493 eV Total energy + Delta-G solvation = -3204.752283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.07468 -37.87466 -37.16367 -34.03220 -33.20109 -32.08660 -30.86355 -29.07645 -27.79434 -27.44553 -24.69833 -23.49506 -22.40469 -21.60521 -21.15008 -19.69053 -18.54774 -17.12436 -16.27528 -16.10770 -15.82467 -15.36424 -15.03674 -14.55370 -14.44636 -13.94203 -13.67358 -13.47803 -13.45104 -13.10152 -12.85184 -12.63592 -12.53845 -12.30448 -12.07815 -11.92010 -11.72213 -11.45614 -11.36427 -11.17976 -11.08868 -11.02596 -10.75103 -10.68276 -10.43249 -10.19027 -9.68760 -9.61015 -9.26546 -8.98319 -8.69009 -8.36820 -8.33360 -6.00158 -4.02116 2.73241 3.10069 3.32643 3.37489 3.39554 3.90091 4.45276 4.56271 4.66454 4.76981 4.84408 4.94563 5.03275 5.09314 5.28774 5.34728 5.35540 5.37624 5.43622 5.47590 5.50447 5.57422 5.59625 5.68441 5.76139 5.80996 5.83033 5.86393 5.97902 6.00297 6.07634 6.34929 6.37095 6.52883 6.66174 6.75135 6.98159 7.01037 7.10985 7.11050 7.57648 7.65494 7.80417 7.99195 8.28917 8.41910 9.04051 9.61721 11.11055 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040432 B = 0.002688 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.359521 B =10413.114060 C =10705.295859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.077 3.923 3 C -0.139 4.139 4 N -0.687 5.687 5 C 0.075 3.925 6 C -0.138 4.138 7 C 0.514 3.486 8 O -0.553 6.553 9 N -0.605 5.605 10 C 0.108 3.892 11 C -0.117 4.117 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.130 4.130 23 C 0.106 3.894 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.339 0.661 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.722 17.124 -6.278 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.032 4.032 3 C -0.197 4.197 4 N -0.317 5.317 5 C -0.055 4.055 6 C -0.178 4.178 7 C 0.302 3.698 8 O -0.432 6.432 9 N -0.338 5.338 10 C -0.014 4.014 11 C -0.155 4.155 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.169 4.169 23 C -0.017 4.017 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.156 0.844 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.037 16.943 -6.947 23.073 hybrid contribution -0.772 -1.347 0.291 1.579 sum -14.809 15.596 -6.656 22.513 Atomic orbital electron populations 1.22516 0.97344 1.01993 1.02371 1.21555 0.92544 0.95604 0.93538 1.21765 1.01868 0.94797 1.01281 1.60605 1.57391 1.07866 1.05880 1.21682 1.00375 0.86223 0.97199 1.21611 1.04448 0.91963 0.99776 1.20530 0.76840 0.88846 0.83592 1.90668 1.49682 1.77434 1.25396 1.48187 1.64207 1.07782 1.13631 1.21768 0.98699 0.78702 1.02230 1.21943 0.93820 1.02092 0.97678 1.21246 1.01284 0.92007 0.95416 1.19117 0.89620 0.95615 0.96537 1.21200 0.95458 0.91879 1.46987 0.92663 1.25017 0.95712 0.98238 0.95494 1.69944 1.00336 1.35465 1.47770 0.86702 0.77014 0.86037 0.78504 1.20262 1.21366 1.20303 1.22035 0.94718 0.98367 1.01741 1.21863 0.97300 0.98272 0.84229 0.92458 0.92027 0.92659 0.90393 0.91921 0.92601 0.92766 0.84353 0.90193 0.94411 0.89287 0.87949 0.91982 0.89757 0.89807 0.92385 0.92383 0.96648 0.96620 0.92989 0.91928 0.91019 0.90312 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 9.16 37.16 0.34 -0.91 16 2 C 0.08 0.61 3.20 -67.71 -0.22 0.39 16 3 C -0.14 -0.96 9.52 37.16 0.35 -0.60 16 4 N -0.69 -5.91 6.25 -106.72 -0.67 -6.58 16 5 C 0.07 0.78 4.77 -3.82 -0.02 0.76 16 6 C -0.14 -1.42 4.31 -27.88 -0.12 -1.54 16 7 C 0.51 7.39 7.70 -10.99 -0.08 7.30 16 8 O -0.55 -9.83 15.39 5.56 0.09 -9.74 16 9 N -0.61 -8.69 2.97 -172.74 -0.51 -9.20 16 10 C 0.11 1.70 6.42 -3.71 -0.02 1.68 16 11 C -0.12 -2.14 5.21 -26.45 -0.14 -2.28 16 12 C -0.08 -1.54 2.10 -90.42 -0.19 -1.73 16 13 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 14 C -0.52 -14.08 8.39 -34.44 -0.29 -14.37 16 15 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.61 13.28 55.43 0.74 -25.87 16 18 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.13 -2.01 5.37 -26.59 -0.14 -2.15 16 23 C 0.11 1.31 6.34 -3.68 -0.02 1.28 16 24 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.42 7.45 -51.93 -0.39 0.04 16 27 H 0.08 0.67 7.80 -51.93 -0.40 0.27 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.34 2.48 8.47 -39.29 -0.33 2.15 16 32 H 0.08 0.97 8.01 -51.93 -0.42 0.55 16 33 H 0.04 0.42 7.39 -51.93 -0.38 0.04 16 34 H 0.09 0.73 7.94 -51.93 -0.41 0.32 16 35 H 0.10 1.02 7.69 -51.93 -0.40 0.62 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 38 H 0.08 1.64 6.93 -51.93 -0.36 1.28 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 46 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -31.00 366.99 -9.39 -40.39 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -8.77 Total: -0.83 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -0.77 Total: -10.11 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: -0.44 Total: -41.65 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.00 -9.39 -40.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566259330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.905 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds