Wall clock time and date at job start Tue Mar 31 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47251 * 2 1 4 4 H 1.08998 * 109.46618 * 54.49121 * 3 2 1 5 5 C 1.50690 * 109.47467 * 174.49525 * 3 2 1 6 6 H 1.07998 * 120.00423 * 120.00274 * 5 3 2 7 7 C 1.37881 * 119.99994 * 300.00118 * 5 3 2 8 8 N 1.31519 * 120.00006 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00211 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46894 * 59.99728 * 9 7 5 11 11 H 1.48499 * 109.47121 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46843 * 299.99776 * 9 7 5 13 13 N 1.46900 * 109.46822 * 294.49653 * 3 2 1 14 14 C 1.46908 * 111.00018 * 152.90814 * 13 3 2 15 15 H 1.09000 * 109.46315 * 33.62331 * 14 13 3 16 16 C 1.52996 * 109.47034 * 273.62607 * 14 13 3 17 17 C 1.50699 * 109.47153 * 153.62274 * 14 13 3 18 18 O 1.21284 * 119.99743 * 0.02562 * 17 14 13 19 19 N 1.34774 * 120.00076 * 180.02562 * 17 14 13 20 20 C 1.46499 * 120.00068 * 180.02562 * 19 17 14 21 21 C 1.53000 * 109.47015 * 274.99738 * 20 19 17 22 22 C 1.52997 * 109.47263 * 180.02562 * 21 20 19 23 23 C 1.53005 * 109.47096 * 59.99832 * 22 21 20 24 24 C 1.53006 * 109.46940 * 300.00033 * 23 22 21 25 25 C 1.52995 * 109.47048 * 60.00390 * 24 23 22 26 26 H 1.09003 * 109.47550 * 300.79558 * 1 2 3 27 27 H 1.09003 * 109.47178 * 60.79848 * 1 2 3 28 28 H 1.08998 * 109.47256 * 180.79745 * 1 2 3 29 29 H 1.09001 * 109.47381 * 119.99863 * 2 1 3 30 30 H 1.09005 * 109.47389 * 240.00340 * 2 1 3 31 31 H 0.96999 * 120.00255 * 179.97438 * 8 7 5 32 32 H 1.00898 * 111.00507 * 28.95471 * 13 3 2 33 33 H 1.08995 * 109.47338 * 183.94411 * 16 14 13 34 34 H 1.09004 * 109.47087 * 303.94222 * 16 14 13 35 35 H 1.09000 * 109.47503 * 63.93743 * 16 14 13 36 36 H 0.97000 * 119.99932 * 359.97438 * 19 17 14 37 37 H 1.09001 * 109.46873 * 34.99972 * 20 19 17 38 38 H 1.09007 * 109.46882 * 300.00148 * 21 20 19 39 39 H 1.08997 * 109.46775 * 59.99826 * 21 20 19 40 40 H 1.09006 * 109.47040 * 300.00340 * 22 21 20 41 41 H 1.08998 * 109.47253 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47026 * 180.02562 * 23 22 21 43 43 H 1.08994 * 109.47390 * 60.00083 * 23 22 21 44 44 H 1.08999 * 109.46999 * 299.99737 * 24 23 22 45 45 H 1.09004 * 109.46828 * 180.02562 * 24 23 22 46 46 H 1.08998 * 109.47049 * 179.97438 * 25 24 23 47 47 H 1.08997 * 109.47662 * 59.99267 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5983 1.9840 0.8366 5 6 3.5407 1.4448 0.1363 6 1 4.1524 1.8871 -0.6360 7 6 4.1329 0.8821 1.2471 8 7 3.3880 0.3439 2.1879 9 14 5.9932 0.8855 1.4164 10 1 6.4876 2.2858 1.4167 11 1 6.3755 0.2258 2.6907 12 1 6.5953 0.1482 0.2766 13 7 1.6617 2.0956 -1.2603 14 6 1.5332 3.5482 -1.0827 15 1 2.2585 3.8894 -0.3441 16 6 0.1196 3.8799 -0.6004 17 6 1.7909 4.2397 -2.3967 18 8 2.0551 3.5867 -3.3840 19 7 1.7277 5.5837 -2.4747 20 6 1.9777 6.2559 -3.7521 21 6 3.4827 6.4627 -3.9336 22 6 3.7438 7.1652 -5.2674 23 6 3.0378 8.5227 -5.2756 24 6 1.5327 8.3158 -5.0942 25 6 1.2717 7.6133 -3.7603 26 1 -0.3634 0.5261 0.8828 27 1 -0.3634 0.5014 -0.8971 28 1 -0.3634 -1.0275 0.0143 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.8046 -0.0522 2.9691 32 1 0.8110 1.7000 -1.6315 33 1 0.0022 4.9615 -0.5357 34 1 -0.6085 3.4768 -1.3045 35 1 -0.0422 3.4374 0.3825 36 1 1.5160 6.1059 -1.6851 37 1 1.5943 5.6417 -4.5669 38 1 3.8659 7.0769 -3.1187 39 1 3.9856 5.4957 -3.9273 40 1 3.3604 6.5514 -6.0826 41 1 4.8160 7.3130 -5.3966 42 1 3.2234 9.0230 -6.2261 43 1 3.4210 9.1365 -4.4606 44 1 1.1494 7.7020 -5.9093 45 1 1.0297 9.2828 -5.1005 46 1 0.1994 7.4663 -3.6308 47 1 1.6550 8.2270 -2.9452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566429247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:21 Heat of formation + Delta-G solvation = -66.459436 kcal Electronic energy + Delta-G solvation = -23243.048669 eV Core-core repulsion = 20038.332657 eV Total energy + Delta-G solvation = -3204.716013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.79452 -38.06034 -36.26510 -33.90902 -33.10139 -31.49199 -30.88777 -29.50594 -28.29476 -26.07003 -24.04845 -22.80893 -22.70186 -21.71665 -20.16709 -19.61258 -19.39885 -16.71530 -16.29342 -15.99177 -15.22002 -14.95176 -14.55317 -14.37557 -14.13141 -14.07469 -13.65210 -13.33846 -12.92908 -12.80009 -12.54283 -12.50830 -12.31802 -12.01108 -11.79285 -11.71200 -11.33798 -11.28574 -11.12285 -10.85727 -10.81579 -10.78881 -10.61731 -10.54193 -10.30652 -9.92489 -9.85833 -9.61899 -9.11463 -8.97804 -8.73014 -8.31958 -7.15975 -5.94205 -3.98027 3.23610 3.36558 3.40326 3.43978 3.45970 4.47788 4.55229 4.61437 4.77052 5.01975 5.13074 5.20052 5.25872 5.32634 5.35088 5.37087 5.42245 5.48424 5.54940 5.62022 5.70595 5.85889 5.91528 5.96509 5.99318 6.02522 6.10832 6.18728 6.19047 6.24776 6.30195 6.34463 6.41757 6.45203 6.80469 6.86574 7.09147 7.18079 7.47665 7.79603 7.86871 7.96108 8.31590 8.42176 8.76585 8.81706 9.10916 9.67081 11.10796 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018899 B = 0.004194 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.178169 B = 6674.012553 C = 7672.911691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.662 5.662 14 C 0.075 3.925 15 H 0.106 0.894 16 C -0.174 4.174 17 C 0.520 3.480 18 O -0.520 6.520 19 N -0.739 5.739 20 C 0.148 3.852 21 C -0.131 4.131 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.115 4.115 25 C -0.126 4.126 26 H 0.042 0.958 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.259 0.741 32 H 0.324 0.676 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.395 0.605 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.945 15.459 -9.134 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.294 5.294 14 C -0.039 4.039 15 H 0.124 0.876 16 C -0.234 4.234 17 C 0.306 3.694 18 O -0.393 6.393 19 N -0.393 5.393 20 C 0.043 3.957 21 C -0.170 4.170 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.153 4.153 25 C -0.164 4.164 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.143 0.857 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.228 0.772 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.076 14.858 -9.909 18.566 hybrid contribution 0.114 0.294 1.112 1.155 sum -4.962 15.151 -8.797 18.209 Atomic orbital electron populations 1.21884 0.99599 0.99650 0.99585 1.21778 0.91236 1.00308 1.03205 1.19194 0.95413 0.90027 0.83939 0.97763 1.21224 0.91338 1.36509 1.04147 0.92095 1.24942 0.98031 0.95626 0.95838 1.69861 1.34729 1.39533 1.09609 0.86618 0.85898 0.78119 0.77092 1.20499 1.21483 1.20278 1.60343 1.37964 0.99135 1.31940 1.21377 0.96735 0.92430 0.93387 0.87581 1.22471 0.97296 1.01269 1.02321 1.21094 0.75638 0.81266 0.91415 1.90639 1.45960 1.64869 1.37850 1.46194 1.74092 1.07190 1.11816 1.20843 0.94824 0.92722 0.87283 1.21940 0.96411 1.01316 0.97316 1.21497 1.00229 0.96024 0.97748 1.21572 0.95278 0.97424 1.01558 1.21474 0.96442 1.00241 0.97165 1.21802 1.00512 0.95688 0.98370 0.93892 0.94608 0.94388 0.88150 0.93930 0.93068 0.85709 0.92707 0.92682 0.91383 0.77162 0.89838 0.91986 0.91087 0.91821 0.91909 0.92102 0.91999 0.91750 0.91799 0.91490 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.74 37.15 0.36 -2.53 16 2 C -0.13 -3.01 5.35 -26.73 -0.14 -3.15 16 3 C 0.22 5.45 1.82 -68.87 -0.13 5.33 16 4 H 0.00 0.12 7.25 -51.93 -0.38 -0.25 16 5 C -0.49 -13.73 8.61 -34.44 -0.30 -14.02 16 6 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.45 16 8 N -0.90 -25.33 11.29 55.43 0.63 -24.70 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 N -0.66 -14.55 5.54 -102.17 -0.57 -15.11 16 14 C 0.08 1.39 2.80 -68.86 -0.19 1.20 16 15 H 0.11 2.10 7.70 -51.93 -0.40 1.70 16 16 C -0.17 -2.56 9.10 37.16 0.34 -2.22 16 17 C 0.52 9.30 7.19 -10.99 -0.08 9.22 16 18 O -0.52 -11.39 16.09 5.55 0.09 -11.30 16 19 N -0.74 -9.87 4.95 -53.80 -0.27 -10.14 16 20 C 0.15 1.79 2.46 -67.93 -0.17 1.62 16 21 C -0.13 -1.60 5.49 -26.73 -0.15 -1.75 16 22 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 23 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 24 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 25 C -0.13 -1.11 5.39 -26.73 -0.14 -1.26 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.03 0.63 6.49 -51.93 -0.34 0.29 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.10 2.66 5.94 -51.93 -0.31 2.35 16 30 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.32 6.73 6.17 -39.29 -0.24 6.48 16 33 H 0.05 0.64 7.46 -51.93 -0.39 0.25 16 34 H 0.05 0.79 8.06 -51.93 -0.42 0.37 16 35 H 0.07 1.06 7.60 -51.93 -0.39 0.66 16 36 H 0.39 4.25 7.97 -40.82 -0.33 3.93 16 37 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 38 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -30.76 363.92 -9.44 -40.21 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -8.62 Total: 8.46 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.21 Total: -49.95 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.76 -9.44 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566429247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.254 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds