Wall clock time and date at job start Tue Mar 31 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46832 * 2 1 4 4 H 1.09002 * 109.46842 * 305.64364 * 3 2 1 5 5 C 1.50703 * 109.47159 * 185.64308 * 3 2 1 6 6 H 1.07997 * 119.99908 * 240.00190 * 5 3 2 7 7 C 1.37878 * 119.99585 * 59.99684 * 5 3 2 8 8 N 1.31515 * 120.00351 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99518 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46797 * 90.00181 * 9 7 5 11 11 H 1.48504 * 109.46893 * 209.99860 * 9 7 5 12 12 H 1.48494 * 109.47104 * 329.99884 * 9 7 5 13 13 N 1.46897 * 109.47307 * 65.64382 * 3 2 1 14 14 C 1.46906 * 111.00122 * 204.30366 * 13 3 2 15 15 H 1.08997 * 109.46793 * 326.25900 * 14 13 3 16 16 C 1.52996 * 109.47230 * 86.25621 * 14 13 3 17 17 C 1.50698 * 109.46991 * 206.25874 * 14 13 3 18 18 O 1.21278 * 120.00380 * 359.97438 * 17 14 13 19 19 N 1.34780 * 119.99681 * 179.97438 * 17 14 13 20 20 C 1.46505 * 119.99843 * 179.97438 * 19 17 14 21 21 C 1.52998 * 109.47220 * 275.00176 * 20 19 17 22 22 C 1.52998 * 109.47030 * 179.97438 * 21 20 19 23 23 C 1.52993 * 109.47012 * 60.00431 * 22 21 20 24 24 C 1.53006 * 109.47064 * 299.99826 * 23 22 21 25 25 C 1.52998 * 109.47064 * 60.00206 * 24 23 22 26 26 H 1.09005 * 109.46683 * 173.71661 * 1 2 3 27 27 H 1.08995 * 109.47176 * 53.72253 * 1 2 3 28 28 H 1.09004 * 109.47367 * 293.71692 * 1 2 3 29 29 H 1.09006 * 109.46936 * 119.99518 * 2 1 3 30 30 H 1.09001 * 109.47001 * 239.99990 * 2 1 3 31 31 H 0.96997 * 119.99513 * 179.97438 * 8 7 5 32 32 H 1.00900 * 111.00109 * 328.25247 * 13 3 2 33 33 H 1.09005 * 109.47268 * 184.80687 * 16 14 13 34 34 H 1.09009 * 109.47276 * 304.80440 * 16 14 13 35 35 H 1.08997 * 109.47270 * 64.80546 * 16 14 13 36 36 H 0.96998 * 120.00101 * 0.02562 * 19 17 14 37 37 H 1.08996 * 109.46898 * 35.00072 * 20 19 17 38 38 H 1.09001 * 109.47654 * 300.00217 * 21 20 19 39 39 H 1.09006 * 109.47381 * 59.99975 * 21 20 19 40 40 H 1.08996 * 109.47114 * 299.99911 * 22 21 20 41 41 H 1.09002 * 109.47063 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47382 * 179.97438 * 23 22 21 43 43 H 1.09004 * 109.47317 * 59.99693 * 23 22 21 44 44 H 1.09004 * 109.46946 * 300.00095 * 24 23 22 45 45 H 1.08997 * 109.47109 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.47063 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47200 * 59.99614 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5964 1.9846 -0.8352 5 6 3.5405 1.4449 -0.1397 6 1 4.1539 1.8866 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3456 -2.1918 9 14 5.9901 0.8854 -1.4251 10 1 6.5455 -0.3490 -0.8142 11 1 6.3535 0.9321 -2.8642 12 1 6.5499 2.0748 -0.7344 13 7 1.6647 2.0946 1.2617 14 6 1.6001 3.5534 1.1015 15 1 2.3547 3.8738 0.3831 16 6 0.2122 3.9499 0.5942 17 6 1.8577 4.2165 2.4300 18 8 2.0734 3.5405 3.4135 19 7 1.8485 5.5609 2.5252 20 6 2.0984 6.2056 3.8168 21 6 0.7911 6.2871 4.6075 22 6 1.0522 6.9597 5.9567 23 6 1.5975 8.3705 5.7261 24 6 2.9048 8.2890 4.9353 25 6 2.6437 7.6164 3.5861 26 1 -0.3633 -1.0216 -0.1125 27 1 -0.3633 0.6080 -0.8284 28 1 -0.3634 0.4134 0.9409 29 1 1.8933 -0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 3.7979 -0.0493 -2.9746 32 1 0.7910 1.7302 1.6111 33 1 0.1908 5.0212 0.3941 34 1 -0.0088 3.4044 -0.3234 35 1 -0.5342 3.7065 1.3503 36 1 1.6756 6.1016 1.7386 37 1 2.8273 5.6220 4.3791 38 1 0.0620 6.8706 4.0453 39 1 0.4027 5.2819 4.7722 40 1 1.7810 6.3758 6.5187 41 1 0.1208 7.0182 6.5198 42 1 1.7831 8.8499 6.6872 43 1 0.8686 8.9544 5.1639 44 1 3.6337 7.7051 5.4974 45 1 3.2930 9.2941 4.7706 46 1 3.5751 7.5579 3.0229 47 1 1.9147 8.2002 3.0241 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566429248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:24 Heat of formation + Delta-G solvation = -67.275821 kcal Electronic energy + Delta-G solvation = -23227.705061 eV Core-core repulsion = 20022.953648 eV Total energy + Delta-G solvation = -3204.751414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.79696 -38.06571 -36.25822 -33.90636 -33.10205 -31.49852 -30.90928 -29.50986 -28.29839 -26.07371 -24.04065 -22.83143 -22.70946 -21.72256 -20.16194 -19.60757 -19.40711 -16.69100 -16.30366 -16.02931 -15.13804 -14.95413 -14.65483 -14.37859 -14.19811 -14.05634 -13.61329 -13.28705 -13.00344 -12.76321 -12.60330 -12.52120 -12.34313 -11.96068 -11.80447 -11.68309 -11.35487 -11.30523 -11.13190 -10.88277 -10.84362 -10.79219 -10.58151 -10.54096 -10.33226 -9.93417 -9.86096 -9.61981 -9.09250 -8.98335 -8.72908 -8.32708 -7.16335 -5.94947 -3.98840 3.24124 3.34702 3.40966 3.44167 3.46358 4.47282 4.54349 4.60717 4.75737 5.01026 5.10321 5.19326 5.26559 5.31039 5.34395 5.34718 5.41961 5.48504 5.55637 5.60656 5.71540 5.85418 5.89596 5.95337 5.98113 6.03901 6.08060 6.18492 6.19726 6.22289 6.26917 6.30754 6.43479 6.46064 6.80341 6.87430 7.09990 7.19067 7.48486 7.79223 7.87300 7.95442 8.31157 8.41325 8.76673 8.82068 9.10339 9.66406 11.10103 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020460 B = 0.004036 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.205747 B = 6935.848221 C = 7824.705388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.004 0.996 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.662 5.662 14 C 0.075 3.925 15 H 0.107 0.893 16 C -0.174 4.174 17 C 0.520 3.480 18 O -0.520 6.520 19 N -0.739 5.739 20 C 0.147 3.853 21 C -0.128 4.128 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.126 4.126 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.259 0.741 32 H 0.324 0.676 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.395 0.605 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.438 15.439 9.517 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.114 3.886 4 H 0.021 0.979 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.294 5.294 14 C -0.039 4.039 15 H 0.125 0.875 16 C -0.233 4.233 17 C 0.306 3.694 18 O -0.394 6.394 19 N -0.392 5.392 20 C 0.042 3.958 21 C -0.167 4.167 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.154 4.154 25 C -0.164 4.164 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.228 0.772 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.595 14.797 10.299 18.876 hybrid contribution 0.069 0.323 -1.112 1.159 sum -5.525 15.119 9.187 18.535 Atomic orbital electron populations 1.21884 0.99601 0.99763 0.99474 1.21758 0.91238 1.00225 1.03182 1.19208 0.95446 0.90070 0.83891 0.97852 1.21254 0.91344 1.36561 1.04087 0.92064 1.24942 0.98039 0.95622 0.95837 1.69873 1.34619 1.39588 1.09573 0.86559 0.85894 0.78494 0.76810 1.20733 1.21460 1.20042 1.60331 1.36327 0.99776 1.32928 1.21368 0.97214 0.92206 0.93144 0.87515 1.22457 0.97520 1.01374 1.01997 1.21094 0.75453 0.81257 0.91566 1.90636 1.46653 1.63374 1.38694 1.46186 1.74980 1.07076 1.11006 1.20851 0.96908 0.92938 0.85115 1.21917 0.97687 1.01228 0.95852 1.21497 1.01039 0.95878 0.97120 1.21565 0.97186 0.97097 0.99936 1.21481 0.97734 1.00477 0.95699 1.21806 1.01476 0.95209 0.97946 0.94373 0.93925 0.94583 0.93903 0.88181 0.93119 0.85779 0.92654 0.91341 0.92803 0.77161 0.89715 0.92115 0.91411 0.91745 0.91994 0.92090 0.92057 0.91665 0.91750 0.91270 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.63 37.16 0.36 -2.55 16 2 C -0.13 -2.98 5.37 -26.73 -0.14 -3.13 16 3 C 0.22 5.44 1.83 -68.87 -0.13 5.32 16 4 H 0.00 0.10 7.19 -51.93 -0.37 -0.27 16 5 C -0.49 -13.71 8.46 -34.44 -0.29 -14.00 16 6 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.45 16 8 N -0.90 -25.28 11.29 55.43 0.63 -24.65 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.66 -14.55 5.53 -102.17 -0.57 -15.12 16 14 C 0.08 1.39 2.80 -68.86 -0.19 1.20 16 15 H 0.11 2.12 7.60 -51.93 -0.39 1.73 16 16 C -0.17 -2.57 9.02 37.16 0.33 -2.23 16 17 C 0.52 9.33 7.19 -10.98 -0.08 9.25 16 18 O -0.52 -11.41 16.09 5.56 0.09 -11.32 16 19 N -0.74 -9.90 4.98 -53.81 -0.27 -10.17 16 20 C 0.15 1.78 2.45 -67.93 -0.17 1.61 16 21 C -0.13 -1.43 5.49 -26.73 -0.15 -1.57 16 22 C -0.12 -1.08 5.92 -26.74 -0.16 -1.24 16 23 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 24 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 25 C -0.13 -1.17 5.39 -26.73 -0.14 -1.31 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.64 6.67 -51.93 -0.35 0.29 16 29 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.32 6.72 6.34 -39.29 -0.25 6.47 16 33 H 0.05 0.65 7.70 -51.93 -0.40 0.25 16 34 H 0.07 1.08 7.47 -51.92 -0.39 0.70 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.39 4.27 8.11 -40.82 -0.33 3.94 16 37 H 0.08 1.25 7.58 -51.93 -0.39 0.85 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -30.75 364.17 -9.47 -40.21 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -8.65 Total: 8.30 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.17 Total: -9.40 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.21 Total: -49.94 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.75 -9.47 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566429248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.062 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds