Wall clock time and date at job start Tue Mar 31 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47055 * 2 1 4 4 H 1.09003 * 109.46682 * 179.62697 * 3 2 1 5 5 C 1.50699 * 109.46783 * 299.62229 * 3 2 1 6 6 H 1.07999 * 119.99667 * 120.00231 * 5 3 2 7 7 C 1.37875 * 120.00354 * 299.99936 * 5 3 2 8 8 N 1.31507 * 119.99849 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99917 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47289 * 90.00305 * 9 7 5 11 11 H 1.48503 * 109.47085 * 210.00169 * 9 7 5 12 12 H 1.48499 * 109.47436 * 330.00151 * 9 7 5 13 13 N 1.46894 * 109.47474 * 59.62580 * 3 2 1 14 14 C 1.46898 * 111.00280 * 86.65222 * 13 3 2 15 15 H 1.09004 * 109.47242 * 326.24033 * 14 13 3 16 16 C 1.53002 * 109.47124 * 86.23763 * 14 13 3 17 17 C 1.50696 * 109.47528 * 206.23936 * 14 13 3 18 18 O 1.21283 * 120.00223 * 0.02562 * 17 14 13 19 19 N 1.34772 * 120.00400 * 179.97438 * 17 14 13 20 20 C 1.46500 * 120.00582 * 180.02562 * 19 17 14 21 21 C 1.53003 * 109.46787 * 274.99973 * 20 19 17 22 22 C 1.53002 * 109.47230 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.46544 * 60.00131 * 22 21 20 24 24 C 1.53003 * 109.47250 * 299.99857 * 23 22 21 25 25 C 1.52991 * 109.46880 * 60.00219 * 24 23 22 26 26 H 1.09001 * 109.46721 * 176.29219 * 1 2 3 27 27 H 1.09000 * 109.46831 * 296.28710 * 1 2 3 28 28 H 1.08991 * 109.46620 * 56.29719 * 1 2 3 29 29 H 1.08999 * 109.47649 * 239.99410 * 2 1 3 30 30 H 1.08999 * 109.46999 * 119.99864 * 2 1 3 31 31 H 0.97006 * 120.00214 * 179.97438 * 8 7 5 32 32 H 1.00893 * 111.00143 * 210.61059 * 13 3 2 33 33 H 1.08999 * 109.47067 * 180.02562 * 16 14 13 34 34 H 1.08997 * 109.46876 * 300.00519 * 16 14 13 35 35 H 1.08995 * 109.46638 * 60.00160 * 16 14 13 36 36 H 0.97005 * 120.00335 * 359.97438 * 19 17 14 37 37 H 1.09000 * 109.47076 * 34.99675 * 20 19 17 38 38 H 1.09000 * 109.47069 * 299.99706 * 21 20 19 39 39 H 1.09006 * 109.47027 * 60.00067 * 21 20 19 40 40 H 1.09003 * 109.47391 * 300.00703 * 22 21 20 41 41 H 1.09000 * 109.47176 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.46728 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.47507 * 60.00421 * 23 22 21 44 44 H 1.09000 * 109.47069 * 300.00188 * 24 23 22 45 45 H 1.08994 * 109.46801 * 180.02562 * 24 23 22 46 46 H 1.09004 * 109.47268 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47295 * 60.00107 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0067 5 6 1.5453 2.1501 -1.2351 6 1 0.9238 3.0284 -1.1418 7 6 1.8861 1.6763 -2.4843 8 7 2.6425 0.6066 -2.5979 9 14 1.2734 2.5540 -4.0152 10 1 2.2544 3.5944 -4.4154 11 1 1.1150 1.5725 -5.1184 12 1 -0.0363 3.1926 -3.7289 13 7 1.5430 2.1376 1.1948 14 6 2.4406 1.9264 2.3383 15 1 2.8758 0.9288 2.2793 16 6 3.5570 2.9722 2.3104 17 6 1.6603 2.0589 3.6207 18 8 0.4731 2.3046 3.5856 19 7 2.2813 1.9033 4.8067 20 6 1.5226 2.0316 6.0533 21 6 1.4448 3.5063 6.4536 22 6 0.6519 3.6403 7.7552 23 6 1.3506 2.8477 8.8618 24 6 1.4284 1.3730 8.4616 25 6 2.2212 1.2390 7.1600 26 1 -0.3633 -1.0255 -0.0665 27 1 -0.3633 0.4551 0.9214 28 1 -0.3632 0.5702 -0.8549 29 1 1.8935 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.8820 0.2730 -3.4767 32 1 1.4142 3.1217 1.0132 33 1 4.2233 2.8152 3.1586 34 1 4.1214 2.8764 1.3828 35 1 3.1219 3.9698 2.3695 36 1 3.2306 1.7057 4.8349 37 1 0.5154 1.6411 5.9075 38 1 2.4520 3.8968 6.5994 39 1 0.9467 4.0709 5.6653 40 1 -0.3552 3.2498 7.6091 41 1 0.5961 4.6910 8.0401 42 1 0.7856 2.9428 9.7890 43 1 2.3578 3.2381 9.0080 44 1 0.4213 0.9826 8.3154 45 1 1.9258 0.8083 9.2501 46 1 2.2770 0.1884 6.8750 47 1 3.2283 1.6294 7.3061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566429249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:28 Heat of formation + Delta-G solvation = -67.231857 kcal Electronic energy + Delta-G solvation = -23221.679080 eV Core-core repulsion = 20016.929573 eV Total energy + Delta-G solvation = -3204.749507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.85980 -38.10805 -36.20415 -33.97163 -33.23318 -31.12930 -30.94687 -29.53894 -28.21911 -25.85022 -23.96229 -23.11771 -22.82593 -21.93468 -20.21857 -19.67631 -18.82232 -17.15244 -16.31168 -15.87837 -15.10229 -15.00258 -14.67759 -14.28799 -14.23060 -13.93602 -13.57445 -13.29026 -13.03088 -12.79398 -12.66774 -12.39104 -12.22294 -11.94324 -11.84857 -11.70656 -11.38805 -11.34430 -10.98119 -10.89910 -10.84718 -10.72561 -10.59478 -10.37743 -10.32193 -10.03213 -9.82253 -9.34697 -9.10483 -8.79525 -8.76590 -8.44779 -7.17288 -6.00897 -4.05673 3.15712 3.30664 3.37086 3.38189 3.43292 4.42307 4.50132 4.56580 4.72169 4.96817 5.06547 5.16233 5.24032 5.26822 5.30979 5.32845 5.38296 5.44158 5.52373 5.56974 5.63443 5.81575 5.86127 5.91480 5.94848 6.00814 6.04409 6.15972 6.21343 6.26507 6.42759 6.59827 6.73265 6.75206 6.93344 7.29559 7.33011 7.52990 7.74884 7.80230 7.83966 7.90285 8.28798 8.41251 8.65514 8.74578 9.03828 9.59017 11.05097 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035552 B = 0.003371 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.400684 B = 8304.648637 C = 8423.178702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.102 4.102 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.661 5.661 14 C 0.070 3.930 15 H 0.095 0.905 16 C -0.173 4.173 17 C 0.519 3.481 18 O -0.518 6.518 19 N -0.739 5.739 20 C 0.147 3.853 21 C -0.129 4.129 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.126 4.126 26 H 0.012 0.988 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.007 0.993 31 H 0.260 0.740 32 H 0.337 0.663 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.395 0.605 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 2.436 20.285 20.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.292 5.292 14 C -0.045 4.045 15 H 0.113 0.887 16 C -0.232 4.232 17 C 0.305 3.695 18 O -0.391 6.391 19 N -0.393 5.393 20 C 0.042 3.958 21 C -0.167 4.167 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.154 4.154 25 C -0.164 4.164 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.156 0.844 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.228 0.772 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.362 1.979 20.237 20.380 hybrid contribution 1.016 0.838 -1.103 1.718 sum 2.378 2.818 19.135 19.487 Atomic orbital electron populations 1.21453 0.97381 0.97293 1.01709 1.21454 0.95250 0.98183 0.99206 1.19173 0.92899 0.91444 0.85405 0.97971 1.21182 1.31554 1.11983 0.90250 0.92219 1.24865 0.95056 0.94986 0.98890 1.69879 1.36727 1.22648 1.23582 0.86572 0.79294 0.79303 0.82712 1.20855 1.21272 1.19809 1.60374 1.46799 1.16976 1.05058 1.21435 0.91773 1.00184 0.91119 0.88749 1.22438 0.98818 0.99432 1.02543 1.21085 0.88258 0.75468 0.84739 1.90651 1.15466 1.45866 1.87097 1.46196 1.12665 1.74897 1.05501 1.20856 0.96778 0.95043 0.83110 1.21921 1.00487 0.96848 0.97477 1.21500 0.99459 1.00012 0.94573 1.21567 1.00797 0.95285 0.98151 1.21476 1.00677 0.96671 0.96557 1.21801 0.99466 1.00436 0.94706 0.96936 0.93505 0.92581 0.89488 0.97470 0.92985 0.84424 0.92945 0.91040 0.92447 0.77182 0.89715 0.92089 0.91345 0.91750 0.91950 0.92065 0.92036 0.91674 0.91737 0.91346 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.87 9.52 37.16 0.35 -2.52 16 2 C -0.10 -2.52 5.58 -26.73 -0.15 -2.67 16 3 C 0.22 5.35 2.10 -68.87 -0.14 5.21 16 4 H 0.00 0.07 7.21 -51.93 -0.37 -0.30 16 5 C -0.51 -13.71 7.28 -34.44 -0.25 -13.96 16 6 H 0.06 1.61 7.59 -52.49 -0.40 1.21 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.93 11.32 55.43 0.63 -24.31 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.66 -14.28 4.84 -102.18 -0.49 -14.78 16 14 C 0.07 1.22 2.80 -68.87 -0.19 1.03 16 15 H 0.09 1.67 7.24 -51.93 -0.38 1.29 16 16 C -0.17 -2.54 9.04 37.16 0.34 -2.21 16 17 C 0.52 8.79 7.19 -10.99 -0.08 8.71 16 18 O -0.52 -10.88 16.09 5.55 0.09 -10.79 16 19 N -0.74 -9.25 4.97 -53.81 -0.27 -9.52 16 20 C 0.15 1.67 2.45 -67.93 -0.17 1.51 16 21 C -0.13 -1.38 5.49 -26.73 -0.15 -1.53 16 22 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 23 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 24 C -0.12 -0.88 5.92 -26.73 -0.16 -1.03 16 25 C -0.13 -1.07 5.39 -26.74 -0.14 -1.22 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 1.12 7.71 -51.93 -0.40 0.72 16 28 H 0.06 1.42 7.10 -51.93 -0.37 1.05 16 29 H 0.09 2.35 6.06 -51.93 -0.31 2.04 16 30 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.34 7.37 7.90 -39.30 -0.31 7.06 16 33 H 0.05 0.60 7.57 -51.93 -0.39 0.21 16 34 H 0.07 1.16 7.54 -51.93 -0.39 0.77 16 35 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 36 H 0.39 3.92 8.02 -40.82 -0.33 3.60 16 37 H 0.08 1.18 7.58 -51.93 -0.39 0.78 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -29.99 363.10 -9.40 -39.39 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -8.65 Total: 7.62 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.15 Total: -9.30 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.13 Total: -48.60 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.99 -9.40 -39.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566429249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.844 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds