Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47069 * 2 1 4 4 H 1.08997 * 109.47243 * 304.14703 * 3 2 1 5 5 C 1.50701 * 109.47009 * 184.14562 * 3 2 1 6 6 H 1.08002 * 120.00103 * 245.40361 * 5 3 2 7 7 C 1.37874 * 120.00079 * 65.40337 * 5 3 2 8 8 N 1.31514 * 120.00382 * 193.89380 * 7 5 3 9 9 Si 1.86807 * 119.99946 * 13.89549 * 7 5 3 10 10 H 1.48496 * 109.46989 * 84.19404 * 9 7 5 11 11 H 1.48505 * 109.47126 * 204.19461 * 9 7 5 12 12 H 1.48498 * 109.46906 * 324.19510 * 9 7 5 13 13 N 1.46905 * 109.47196 * 64.14658 * 3 2 1 14 14 C 1.46897 * 110.99947 * 262.08596 * 13 3 2 15 15 C 1.50694 * 109.47246 * 175.04554 * 14 13 3 16 16 O 1.21288 * 119.99768 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00360 * 180.02562 * 15 14 13 18 18 C 1.46924 * 120.62815 * 359.96935 * 17 15 14 19 19 C 1.53198 * 108.77405 * 126.41892 * 18 17 15 20 20 H 1.09008 * 109.49402 * 294.68482 * 19 18 17 21 21 C 1.52998 * 109.49980 * 174.58762 * 19 18 17 22 22 C 1.53039 * 109.31197 * 54.63623 * 19 18 17 23 23 C 1.53039 * 109.53670 * 298.63647 * 22 19 18 24 24 H 1.09007 * 109.50111 * 301.41186 * 23 22 19 25 25 C 1.53006 * 109.49787 * 181.31856 * 23 22 19 26 26 C 1.46923 * 120.63351 * 179.97438 * 17 15 14 27 27 H 1.08999 * 109.47611 * 57.37764 * 1 2 3 28 28 H 1.09001 * 109.47092 * 177.38029 * 1 2 3 29 29 H 1.09000 * 109.47251 * 297.37937 * 1 2 3 30 30 H 1.08996 * 109.47091 * 239.99728 * 2 1 3 31 31 H 1.09007 * 109.47186 * 119.99833 * 2 1 3 32 32 H 0.97003 * 120.00721 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99655 * 138.13147 * 13 3 2 34 34 H 1.09001 * 109.47333 * 55.04548 * 14 13 3 35 35 H 1.08999 * 109.47125 * 295.04815 * 14 13 3 36 36 H 1.09000 * 109.59252 * 246.20344 * 18 17 15 37 37 H 1.09002 * 109.58601 * 6.63239 * 18 17 15 38 38 H 1.09000 * 109.47038 * 300.16368 * 21 19 18 39 39 H 1.09005 * 109.46671 * 60.15891 * 21 19 18 40 40 H 1.08999 * 109.46865 * 180.15719 * 21 19 18 41 41 H 1.08998 * 109.46147 * 178.61760 * 22 19 18 42 42 H 1.08999 * 109.45873 * 58.65338 * 22 19 18 43 43 H 1.08995 * 109.46994 * 59.99747 * 25 23 22 44 44 H 1.08997 * 109.47181 * 179.97438 * 25 23 22 45 45 H 1.08997 * 109.46829 * 300.00160 * 25 23 22 46 46 H 1.09003 * 109.58657 * 113.79280 * 26 17 15 47 47 H 1.09002 * 109.58790 * 353.37453 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6172 1.9773 -0.8505 5 6 3.5434 1.4437 -0.1027 6 1 4.1405 1.8129 0.7181 7 6 4.1568 0.9736 -1.2445 8 7 5.4466 0.7167 -1.2400 9 14 3.1558 0.7015 -2.7981 10 1 3.0361 1.9821 -3.5404 11 1 3.8337 -0.3052 -3.6538 12 1 1.8019 0.2114 -2.4350 13 7 1.6337 2.1055 1.2464 14 6 0.4209 2.9092 1.0441 15 6 -0.0337 3.4740 2.3651 16 8 0.5915 3.2313 3.3757 17 7 -1.1349 4.2489 2.4237 18 6 -1.9022 4.5523 1.2081 19 6 -3.3685 4.1763 1.4439 20 1 -3.4507 3.0974 1.5760 21 6 -4.2067 4.6093 0.2394 22 6 -3.8768 4.8852 2.7013 23 6 -3.0602 4.4279 3.9121 24 1 -3.1453 3.3467 4.0211 25 6 -3.5905 5.1122 5.1737 26 6 -1.5908 4.8062 3.7044 27 1 -0.3634 0.5540 -0.8655 28 1 -0.3633 -1.0266 -0.0470 29 1 -0.3634 0.4726 0.9125 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8783 0.3863 -2.0434 33 1 2.3838 2.6696 1.6169 34 1 -0.3662 2.2807 0.6275 35 1 0.6368 3.7256 0.3549 36 1 -1.8292 5.6169 0.9860 37 1 -1.5066 3.9746 0.3726 38 1 -4.1227 5.6880 0.1072 39 1 -3.8442 4.1042 -0.6559 40 1 -5.2503 4.3441 0.4089 41 1 -4.9270 4.6388 2.8576 42 1 -3.7713 5.9631 2.5783 43 1 -4.6370 4.8447 5.3195 44 1 -3.0088 4.7859 6.0358 45 1 -3.5036 6.1932 5.0644 46 1 -1.4922 5.8916 3.6863 47 1 -0.9897 4.3962 4.5161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568408294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = -49.917969 kcal Electronic energy + Delta-G solvation = -23454.617484 eV Core-core repulsion = 20250.618764 eV Total energy + Delta-G solvation = -3203.998721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.23507 -37.95096 -36.24414 -34.03351 -33.55477 -32.40300 -31.31186 -28.50000 -27.00649 -26.98111 -25.89594 -24.09586 -22.39146 -21.05792 -20.46868 -19.71171 -18.96754 -17.12983 -16.67322 -15.92720 -15.76000 -15.16990 -15.00666 -14.86440 -14.02361 -13.85883 -13.71810 -13.24967 -13.11305 -12.93957 -12.85700 -12.58230 -12.50716 -12.34216 -12.16248 -12.05994 -11.83842 -11.63488 -11.42921 -11.10890 -11.02020 -10.84990 -10.78250 -10.71712 -10.55226 -10.42127 -9.88732 -9.47645 -9.24586 -9.09463 -8.57719 -8.46640 -7.44973 -6.12548 -4.09284 2.91570 3.03513 3.25758 3.35291 3.36334 4.34168 4.38915 4.49993 4.54231 4.67735 4.84183 5.02309 5.12152 5.15274 5.23056 5.24621 5.30806 5.35034 5.41658 5.44086 5.53161 5.59680 5.65008 5.71280 5.77463 5.79114 5.82518 5.90888 5.94271 6.00820 6.02957 6.04568 6.18836 6.23833 6.54602 6.60790 6.73411 6.99209 7.02578 7.44318 7.47090 7.64717 7.94144 8.33990 8.47905 8.61206 8.96613 9.51869 11.00407 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024652 B = 0.004113 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.534587 B = 6806.674046 C = 7360.237320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.194 3.806 4 H 0.001 0.999 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.078 3.922 8 N -0.890 5.890 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.248 1.248 13 N -0.662 5.662 14 C 0.038 3.962 15 C 0.516 3.484 16 O -0.521 6.521 17 N -0.622 5.622 18 C 0.112 3.888 19 C -0.109 4.109 20 H 0.076 0.924 21 C -0.145 4.145 22 C -0.108 4.108 23 C -0.108 4.108 24 H 0.074 0.926 25 C -0.144 4.144 26 C 0.117 3.883 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.264 0.736 33 H 0.348 0.652 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.861 9.610 4.703 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C 0.085 3.915 4 H 0.019 0.981 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.689 3.311 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.172 1.172 13 N -0.295 5.295 14 C -0.095 4.095 15 C 0.304 3.696 16 O -0.396 6.396 17 N -0.357 5.357 18 C -0.011 4.011 19 C -0.129 4.129 20 H 0.094 0.906 21 C -0.203 4.203 22 C -0.145 4.145 23 C -0.127 4.127 24 H 0.092 0.908 25 C -0.202 4.202 26 C -0.006 4.006 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.168 0.832 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.644 8.844 5.381 23.992 hybrid contribution -0.139 0.609 -1.542 1.663 sum -21.782 9.453 3.839 24.053 Atomic orbital electron populations 1.21915 0.98885 0.99702 1.00265 1.21939 0.92558 0.99395 1.01321 1.19454 0.95583 0.90745 0.85692 0.98112 1.21193 0.89101 1.43498 1.03172 0.90427 1.24901 0.94746 0.94147 0.98748 1.69967 1.10334 1.43726 1.28705 0.87270 0.81986 0.78202 0.83609 1.20608 1.21417 1.17236 1.60278 1.05590 1.33051 1.30596 1.22038 0.97542 0.97206 0.92720 1.21030 0.79429 0.77153 0.91984 1.90674 1.54365 1.57777 1.36734 1.48161 1.27630 1.51637 1.08321 1.21794 0.90911 1.01072 0.87359 1.21534 0.94650 1.01126 0.95544 0.90565 1.21771 0.99654 1.01494 0.97409 1.21645 0.99166 1.00129 0.93586 1.21509 0.94948 1.01090 0.95170 0.90758 1.21753 1.00939 1.00502 0.96993 1.21562 0.94255 0.97869 0.86867 0.94448 0.94451 0.92726 0.92620 0.92029 0.92592 0.83204 0.88460 0.93346 0.91482 0.89495 0.92484 0.92223 0.92373 0.91763 0.91798 0.92461 0.92333 0.92563 0.92010 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.65 37.15 0.32 -2.41 16 2 C -0.11 -2.52 4.97 -26.73 -0.13 -2.66 16 3 C 0.19 4.54 1.80 -68.86 -0.12 4.42 16 4 H 0.00 0.03 6.42 -51.93 -0.33 -0.30 16 5 C -0.53 -14.84 9.00 -34.44 -0.31 -15.15 16 6 H 0.08 2.37 7.73 -52.49 -0.41 1.97 16 7 C 0.08 2.21 5.36 -17.82 -0.10 2.12 16 8 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 9 Si 0.86 20.75 25.88 -169.99 -4.40 16.36 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.25 -5.57 5.35 56.52 0.30 -5.26 16 13 N -0.66 -14.20 5.64 -109.22 -0.62 -14.81 16 14 C 0.04 0.65 3.82 -4.98 -0.02 0.63 16 15 C 0.52 8.70 7.75 -10.99 -0.09 8.61 16 16 O -0.52 -10.78 15.72 5.55 0.09 -10.69 16 17 N -0.62 -8.00 2.97 -172.80 -0.51 -8.51 16 18 C 0.11 1.11 5.63 -3.71 -0.02 1.09 16 19 C -0.11 -0.91 2.87 -90.50 -0.26 -1.17 16 20 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 21 C -0.15 -0.98 9.20 37.16 0.34 -0.63 16 22 C -0.11 -0.83 4.45 -26.69 -0.12 -0.95 16 23 C -0.11 -0.97 2.87 -90.52 -0.26 -1.23 16 24 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 25 C -0.14 -1.05 9.20 37.16 0.34 -0.71 16 26 C 0.12 1.32 5.71 -3.74 -0.02 1.30 16 27 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.97 6.30 -51.93 -0.33 0.64 16 30 H 0.06 1.28 4.72 -51.93 -0.25 1.04 16 31 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.35 7.94 7.86 -39.29 -0.31 7.63 16 34 H 0.10 1.54 5.10 -51.93 -0.26 1.28 16 35 H 0.05 0.78 7.94 -51.93 -0.41 0.37 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.86 5.93 -51.93 -0.31 0.56 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.22 7.01 -51.93 -0.36 0.86 16 LS Contribution 354.44 15.07 5.34 5.34 Total: -1.00 -31.65 354.44 -8.31 -39.96 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -8.54 Total: 5.35 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -0.44 Total: -6.74 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.36 Total: -49.57 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.40 Total: 16.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.65 -8.31 -39.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568408294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.954 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds