Wall clock time and date at job start Tue Mar 31 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47043 * 2 1 4 4 H 1.09004 * 109.47137 * 304.14454 * 3 2 1 5 5 C 1.50700 * 109.47020 * 184.14638 * 3 2 1 6 6 H 1.08001 * 120.00343 * 245.39771 * 5 3 2 7 7 C 1.37882 * 119.99807 * 65.40289 * 5 3 2 8 8 N 1.31516 * 119.99736 * 193.89246 * 7 5 3 9 9 Si 1.86800 * 120.00182 * 13.89644 * 7 5 3 10 10 H 1.48495 * 109.47253 * 84.19460 * 9 7 5 11 11 H 1.48501 * 109.46755 * 204.19685 * 9 7 5 12 12 H 1.48503 * 109.47043 * 324.19404 * 9 7 5 13 13 N 1.46895 * 109.47466 * 64.14417 * 3 2 1 14 14 C 1.46897 * 111.00378 * 262.08531 * 13 3 2 15 15 C 1.50699 * 109.47316 * 175.04130 * 14 13 3 16 16 O 1.21282 * 119.99928 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00017 * 180.02562 * 15 14 13 18 18 C 1.46924 * 120.62761 * 359.71697 * 17 15 14 19 19 C 1.53192 * 108.77103 * 126.67038 * 18 17 15 20 20 H 1.09006 * 109.49981 * 294.68349 * 19 18 17 21 21 C 1.52997 * 109.50195 * 174.58765 * 19 18 17 22 22 C 1.53047 * 109.31408 * 54.63386 * 19 18 17 23 23 C 1.53040 * 109.53652 * 298.63414 * 22 19 18 24 24 H 1.09000 * 109.51966 * 181.32960 * 23 22 19 25 25 C 1.52994 * 109.50032 * 301.41299 * 23 22 19 26 26 C 1.46923 * 120.62775 * 180.02562 * 17 15 14 27 27 H 1.08992 * 109.46950 * 177.38051 * 1 2 3 28 28 H 1.09005 * 109.46786 * 297.38026 * 1 2 3 29 29 H 1.08995 * 109.46986 * 57.37972 * 1 2 3 30 30 H 1.08993 * 109.47118 * 239.99873 * 2 1 3 31 31 H 1.09003 * 109.46767 * 119.99761 * 2 1 3 32 32 H 0.97000 * 120.00213 * 179.97438 * 8 7 5 33 33 H 1.00906 * 111.00254 * 138.13547 * 13 3 2 34 34 H 1.09008 * 109.46738 * 55.04310 * 14 13 3 35 35 H 1.08998 * 109.47493 * 295.04550 * 14 13 3 36 36 H 1.08998 * 109.58907 * 246.45123 * 18 17 15 37 37 H 1.09002 * 109.59027 * 6.88721 * 18 17 15 38 38 H 1.09001 * 109.47174 * 300.16199 * 21 19 18 39 39 H 1.09003 * 109.46979 * 60.15690 * 21 19 18 40 40 H 1.08999 * 109.47466 * 180.16189 * 21 19 18 41 41 H 1.09005 * 109.45808 * 178.61616 * 22 19 18 42 42 H 1.08996 * 109.44418 * 58.64927 * 22 19 18 43 43 H 1.09001 * 109.46966 * 179.84017 * 25 23 22 44 44 H 1.08996 * 109.47102 * 299.84038 * 25 23 22 45 45 H 1.08998 * 109.47426 * 59.83768 * 25 23 22 46 46 H 1.09003 * 109.58983 * 353.11819 * 26 17 15 47 47 H 1.09002 * 109.58685 * 113.40714 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6173 1.9773 -0.8505 5 6 3.5435 1.4437 -0.1027 6 1 4.1406 1.8129 0.7180 7 6 4.1568 0.9735 -1.2446 8 7 5.4467 0.7167 -1.2400 9 14 3.1558 0.7015 -2.7981 10 1 3.0361 1.9820 -3.5405 11 1 3.8338 -0.3053 -3.6538 12 1 1.8019 0.2113 -2.4351 13 7 1.6338 2.1055 1.2463 14 6 0.4210 2.9093 1.0440 15 6 -0.0336 3.4740 2.3651 16 8 0.5915 3.2313 3.3757 17 7 -1.1348 4.2489 2.4237 18 6 -1.8989 4.5569 1.2071 19 6 -3.3669 4.1863 1.4400 20 1 -3.4536 3.1076 1.5705 21 6 -4.2016 4.6240 0.2347 22 6 -3.8747 4.8954 2.6976 23 6 -3.0619 4.4333 3.9091 24 1 -3.4391 4.9207 4.8082 25 6 -3.1874 2.9160 4.0598 26 6 -1.5901 4.8071 3.7042 27 1 -0.3633 -1.0265 -0.0470 28 1 -0.3633 0.4726 0.9126 29 1 -0.3633 0.5540 -0.8655 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8782 0.3856 -2.0432 33 1 2.3838 2.6698 1.6168 34 1 -0.3661 2.2807 0.6274 35 1 0.6369 3.7257 0.3548 36 1 -1.8214 5.6215 0.9866 37 1 -1.5042 3.9788 0.3715 38 1 -4.1133 5.7026 0.1040 39 1 -3.8396 4.1187 -0.6607 40 1 -5.2465 4.3627 0.4021 41 1 -4.9262 4.6528 2.8518 42 1 -3.7647 5.9730 2.5760 43 1 -2.6060 2.5871 4.9211 44 1 -4.2345 2.6508 4.2055 45 1 -2.8112 2.4291 3.1601 46 1 -0.9916 4.3943 4.5163 47 1 -1.4851 5.8920 3.6879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568408295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:35 Heat of formation + Delta-G solvation = -45.945495 kcal Electronic energy + Delta-G solvation = -23747.290929 eV Core-core repulsion = 20543.464468 eV Total energy + Delta-G solvation = -3203.826461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36061 -38.00469 -36.24251 -33.66490 -33.51905 -32.37734 -31.29276 -28.46190 -27.13344 -26.91435 -25.88136 -24.24880 -22.43270 -21.68151 -19.91152 -19.70866 -18.59784 -17.16537 -16.70426 -15.91368 -15.59979 -15.21786 -15.01932 -14.49398 -14.28433 -14.00523 -13.66182 -13.57061 -13.14730 -13.00115 -12.80616 -12.59746 -12.33231 -12.20011 -12.10409 -11.81222 -11.78169 -11.63114 -11.42560 -11.21157 -11.01393 -10.85040 -10.72047 -10.66092 -10.46116 -10.42003 -9.88677 -9.46742 -9.23715 -9.09475 -8.54877 -8.46615 -7.44803 -6.12582 -4.09234 2.93326 3.05122 3.25666 3.35209 3.36253 4.37459 4.38912 4.49795 4.55763 4.74657 4.87218 4.97700 5.14325 5.16087 5.21196 5.25938 5.32263 5.44371 5.44792 5.53158 5.55715 5.66206 5.71679 5.73693 5.78686 5.80518 5.84052 5.92911 6.00901 6.02656 6.04363 6.05940 6.23658 6.25308 6.57019 6.60867 6.73272 6.99189 7.02516 7.44365 7.48377 7.64779 7.94310 8.34178 8.49147 8.61334 8.96640 9.51881 11.00399 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023835 B = 0.004356 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.438021 B = 6426.073435 C = 6859.566079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.194 3.806 4 H 0.001 0.999 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.078 3.922 8 N -0.890 5.890 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.248 1.248 13 N -0.662 5.662 14 C 0.037 3.963 15 C 0.516 3.484 16 O -0.521 6.521 17 N -0.619 5.619 18 C 0.112 3.888 19 C -0.111 4.111 20 H 0.080 0.920 21 C -0.146 4.146 22 C -0.108 4.108 23 C -0.106 4.106 24 H 0.078 0.922 25 C -0.145 4.145 26 C 0.116 3.884 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.264 0.736 33 H 0.348 0.652 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.690 8.959 4.366 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.085 3.915 4 H 0.019 0.981 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.689 3.311 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.172 1.172 13 N -0.295 5.295 14 C -0.095 4.095 15 C 0.304 3.696 16 O -0.395 6.395 17 N -0.355 5.355 18 C -0.011 4.011 19 C -0.130 4.130 20 H 0.098 0.902 21 C -0.204 4.204 22 C -0.145 4.145 23 C -0.125 4.125 24 H 0.096 0.904 25 C -0.203 4.203 26 C -0.007 4.007 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.168 0.832 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.110 0.890 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.479 8.190 5.048 23.536 hybrid contribution -0.139 0.640 -1.536 1.670 sum -21.618 8.830 3.512 23.615 Atomic orbital electron populations 1.21913 0.98884 0.99691 1.00254 1.21940 0.92560 0.99399 1.01318 1.19452 0.95584 0.90741 0.85700 0.98134 1.21193 0.89097 1.43499 1.03161 0.90434 1.24900 0.94738 0.94149 0.98734 1.69968 1.10335 1.43712 1.28715 0.87271 0.81984 0.78199 0.83620 1.20614 1.21420 1.17244 1.60277 1.05592 1.33042 1.30579 1.22041 0.97527 0.97188 0.92779 1.21003 0.79426 0.77209 0.91936 1.90672 1.54330 1.57801 1.36711 1.48114 1.27669 1.51497 1.08204 1.21785 0.90966 1.01022 0.87339 1.21577 0.94611 1.01442 0.95406 0.90168 1.21778 0.99686 1.01447 0.97460 1.21603 0.99181 0.99874 0.93883 1.21496 0.95415 0.97261 0.98369 0.90358 1.21823 1.01049 0.94959 1.02426 1.21561 0.94375 0.97695 0.87053 0.94459 0.92729 0.94458 0.92626 0.92031 0.92597 0.83214 0.88505 0.93395 0.91526 0.89556 0.92537 0.92272 0.92411 0.91791 0.91866 0.92618 0.92994 0.92146 0.89000 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.65 37.16 0.32 -2.39 16 2 C -0.11 -2.52 4.97 -26.73 -0.13 -2.65 16 3 C 0.19 4.53 1.80 -68.87 -0.12 4.41 16 4 H 0.00 0.03 6.42 -51.93 -0.33 -0.31 16 5 C -0.53 -14.81 9.00 -34.44 -0.31 -15.12 16 6 H 0.08 2.37 7.73 -52.49 -0.41 1.96 16 7 C 0.08 2.21 5.36 -17.82 -0.10 2.12 16 8 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 9 Si 0.86 20.74 25.88 -169.99 -4.40 16.35 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.25 -5.57 5.35 56.52 0.30 -5.26 16 13 N -0.66 -14.13 5.64 -109.22 -0.62 -14.75 16 14 C 0.04 0.64 3.82 -4.98 -0.02 0.62 16 15 C 0.52 8.57 7.75 -10.98 -0.09 8.48 16 16 O -0.52 -10.64 15.72 5.56 0.09 -10.55 16 17 N -0.62 -7.78 2.41 -172.75 -0.42 -8.19 16 18 C 0.11 1.09 5.62 -3.71 -0.02 1.07 16 19 C -0.11 -0.91 2.53 -90.50 -0.23 -1.14 16 20 H 0.08 0.75 6.33 -51.93 -0.33 0.42 16 21 C -0.15 -0.98 9.20 37.16 0.34 -0.64 16 22 C -0.11 -0.81 4.71 -26.69 -0.13 -0.94 16 23 C -0.11 -0.94 3.21 -90.48 -0.29 -1.23 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 C -0.15 -1.45 8.71 37.15 0.32 -1.13 16 26 C 0.12 1.28 5.83 -3.69 -0.02 1.26 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.96 6.30 -51.93 -0.33 0.63 16 29 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 30 H 0.06 1.28 4.72 -51.93 -0.25 1.04 16 31 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.35 7.91 7.86 -39.29 -0.31 7.60 16 34 H 0.10 1.53 5.11 -51.92 -0.27 1.26 16 35 H 0.05 0.77 7.94 -51.93 -0.41 0.36 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.85 5.94 -51.93 -0.31 0.54 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.70 5.97 -51.93 -0.31 0.39 16 46 H 0.09 1.21 7.01 -51.93 -0.36 0.84 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -31.47 349.78 -8.10 -39.57 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.34 Total: 5.80 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.47 Total: -7.28 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.26 Total: -49.16 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.40 Total: 16.35 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.47 -8.10 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568408295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.375 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds