Wall clock time and date at job start Tue Mar 31 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52995 * 109.47111 * 2 1 4 4 H 1.08999 * 109.47247 * 304.24802 * 3 2 1 5 5 C 1.50696 * 109.47172 * 184.24623 * 3 2 1 6 6 H 1.08008 * 120.00018 * 240.00027 * 5 3 2 7 7 C 1.37878 * 120.00211 * 59.99660 * 5 3 2 8 8 N 1.31504 * 119.99826 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00158 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47017 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47320 * 119.99801 * 9 7 5 12 12 H 1.48494 * 109.47620 * 240.00388 * 9 7 5 13 13 N 1.46908 * 109.47299 * 64.24230 * 3 2 1 14 14 C 1.46896 * 110.99828 * 205.89217 * 13 3 2 15 15 C 1.50704 * 109.46898 * 174.71305 * 14 13 3 16 16 O 1.21285 * 120.00084 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00224 * 180.02562 * 15 14 13 18 18 C 1.46930 * 120.63234 * 179.97438 * 17 15 14 19 19 C 1.53194 * 108.77572 * 126.36891 * 18 17 15 20 20 H 1.08995 * 109.49651 * 174.58768 * 19 18 17 21 21 C 1.53002 * 109.49388 * 294.68152 * 19 18 17 22 22 C 1.53033 * 109.31197 * 54.63312 * 19 18 17 23 23 C 1.53045 * 109.54137 * 298.63217 * 22 19 18 24 24 H 1.08994 * 109.49830 * 301.41407 * 23 22 19 25 25 C 1.52995 * 109.49902 * 181.31606 * 23 22 19 26 26 C 1.46925 * 120.62931 * 359.97438 * 17 15 14 27 27 H 1.08999 * 109.46718 * 174.92944 * 1 2 3 28 28 H 1.08995 * 109.46880 * 294.93616 * 1 2 3 29 29 H 1.09001 * 109.46685 * 54.93285 * 1 2 3 30 30 H 1.09000 * 109.47322 * 239.99669 * 2 1 3 31 31 H 1.09001 * 109.46760 * 119.99766 * 2 1 3 32 32 H 0.97004 * 120.00159 * 179.97438 * 8 7 5 33 33 H 1.00906 * 110.99677 * 81.94004 * 13 3 2 34 34 H 1.08995 * 109.47204 * 54.71351 * 14 13 3 35 35 H 1.08997 * 109.47140 * 294.70548 * 14 13 3 36 36 H 1.09002 * 109.58369 * 6.58099 * 18 17 15 37 37 H 1.08990 * 109.58307 * 246.15406 * 18 17 15 38 38 H 1.08999 * 109.47256 * 60.00188 * 21 19 18 39 39 H 1.09007 * 109.46891 * 180.02562 * 21 19 18 40 40 H 1.08992 * 109.47463 * 300.00130 * 21 19 18 41 41 H 1.08997 * 109.46338 * 58.65799 * 22 19 18 42 42 H 1.09005 * 109.45997 * 178.61686 * 22 19 18 43 43 H 1.09003 * 109.47049 * 60.00282 * 25 23 22 44 44 H 1.08999 * 109.47534 * 180.02562 * 25 23 22 45 45 H 1.09000 * 109.47462 * 300.00652 * 25 23 22 46 46 H 1.08998 * 109.58890 * 113.84515 * 26 17 15 47 47 H 1.08999 * 109.58902 * 353.41789 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6159 1.9778 -0.8495 5 6 3.5434 1.4438 -0.1052 6 1 4.1390 1.8918 0.6765 7 6 4.1584 0.8730 -1.1993 8 7 3.4332 0.3279 -2.1512 9 14 6.0219 0.8740 -1.3293 10 1 6.6009 1.5434 -0.1368 11 1 6.5140 -0.5253 -1.3985 12 1 6.4322 1.6042 -2.5554 13 7 1.6359 2.1048 1.2474 14 6 1.5387 3.5590 1.0637 15 6 0.9986 4.1892 2.3216 16 8 0.7215 3.4952 3.2769 17 7 0.8227 5.5239 2.3848 18 6 0.2965 6.1528 3.6040 19 6 1.2600 7.2601 4.0428 20 1 0.8344 7.7980 4.8898 21 6 2.5981 6.6405 4.4508 22 6 1.4797 8.2301 2.8797 23 6 2.1077 7.4825 1.7013 24 1 3.0531 7.0391 2.0139 25 6 2.3571 8.4599 0.5509 26 6 1.1533 6.3777 1.2357 27 1 -0.3633 -1.0237 -0.0908 28 1 -0.3633 0.4333 0.9318 29 1 -0.3633 0.5905 -0.8412 30 1 1.8935 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8658 -0.0734 -2.9211 33 1 2.2689 1.8768 1.9994 34 1 0.8687 3.7762 0.2319 35 1 2.5273 3.9650 0.8496 36 1 0.2138 5.4062 4.3938 37 1 -0.6844 6.5818 3.3996 38 1 3.0237 6.1039 3.6028 39 1 3.2832 7.4286 4.7634 40 1 2.4408 5.9475 5.2772 41 1 0.5227 8.6525 2.5734 42 1 2.1456 9.0326 3.1970 43 1 3.0336 9.2473 0.8834 44 1 2.8040 7.9269 -0.2883 45 1 1.4112 8.9018 0.2380 46 1 0.2421 6.8251 0.8386 47 1 1.6360 5.7796 0.4628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568408296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:39 Heat of formation + Delta-G solvation = -56.275538 kcal Electronic energy + Delta-G solvation = -23583.709007 eV Core-core repulsion = 20379.434602 eV Total energy + Delta-G solvation = -3204.274406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23696 -37.84690 -35.87032 -33.57055 -33.41498 -32.35470 -31.03343 -27.84664 -26.84749 -26.75695 -25.66436 -24.23992 -22.47769 -21.55415 -19.78952 -19.51280 -18.44152 -16.90334 -16.59917 -15.77058 -15.40713 -15.02447 -14.79177 -14.26939 -14.18328 -14.00304 -13.54048 -13.48715 -13.12603 -12.81286 -12.51972 -12.27145 -12.19498 -11.96333 -11.72872 -11.68378 -11.63048 -11.19730 -11.15761 -11.12360 -10.92979 -10.87459 -10.64354 -10.58569 -10.36621 -10.16957 -9.71750 -9.54658 -9.21080 -9.01810 -8.44081 -8.39972 -7.24686 -6.01651 -4.15230 3.06717 3.17694 3.24112 3.33122 3.36294 4.37390 4.47751 4.59910 4.66335 4.83447 5.01159 5.07797 5.23568 5.25610 5.32711 5.41970 5.51015 5.53466 5.54945 5.62310 5.68715 5.73770 5.83095 5.88439 5.93382 5.97421 6.01148 6.08883 6.14265 6.17154 6.33259 6.45027 6.56445 6.68665 6.77122 7.11851 7.23689 7.42846 7.55134 7.65527 7.77240 8.08435 8.12309 8.30343 8.57175 8.68116 8.98015 9.52740 10.98109 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.004704 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.870713 B = 5951.447811 C = 6789.708578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.672 5.672 14 C 0.053 3.947 15 C 0.516 3.484 16 O -0.528 6.528 17 N -0.619 5.619 18 C 0.116 3.884 19 C -0.106 4.106 20 H 0.077 0.923 21 C -0.145 4.145 22 C -0.108 4.108 23 C -0.111 4.111 24 H 0.080 0.920 25 C -0.146 4.146 26 C 0.112 3.888 27 H 0.024 0.976 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.091 0.909 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.336 0.664 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.046 16.487 6.775 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.586 4.586 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.303 5.303 14 C -0.080 4.080 15 C 0.305 3.695 16 O -0.403 6.403 17 N -0.355 5.355 18 C -0.007 4.007 19 C -0.126 4.126 20 H 0.095 0.905 21 C -0.203 4.203 22 C -0.145 4.145 23 C -0.130 4.130 24 H 0.098 0.902 25 C -0.204 4.204 26 C -0.011 4.011 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.154 0.846 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.867 15.861 7.003 18.008 hybrid contribution 2.060 0.370 -0.309 2.116 sum -2.807 16.231 6.694 17.780 Atomic orbital electron populations 1.21695 0.98942 0.98307 1.00474 1.21480 0.92169 0.98952 1.01736 1.19203 0.92750 0.91394 0.85850 0.94985 1.21905 0.92648 1.38227 1.05821 0.92811 1.24919 0.97950 0.94899 0.95629 1.69887 1.34809 1.37959 1.09513 0.86609 0.86084 0.77847 0.77871 1.19943 1.20896 1.21036 1.60631 1.56235 1.03513 1.09896 1.21672 0.99951 0.92526 0.93878 1.21201 0.77098 0.80843 0.90395 1.90639 1.50031 1.61116 1.38504 1.48126 1.66080 1.06451 1.14806 1.21533 0.95438 0.95455 0.88237 1.21492 0.96847 0.96301 0.97920 0.90458 1.21825 0.96344 1.00405 1.01689 1.21600 1.00793 0.97391 0.94729 1.21579 0.99667 0.96005 0.95791 0.90213 1.21773 1.01670 0.98920 0.97992 1.21803 0.98504 0.92369 0.88446 0.95644 0.93271 0.94558 0.89124 0.94943 0.92894 0.84629 0.89365 0.92692 0.89117 0.92134 0.92118 0.93020 0.92721 0.91899 0.91881 0.92511 0.92124 0.92588 0.91613 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.73 37.16 0.36 -2.57 16 2 C -0.10 -2.56 5.45 -26.73 -0.15 -2.70 16 3 C 0.22 5.32 1.98 -68.87 -0.14 5.18 16 4 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 5 C -0.55 -14.53 8.47 -34.44 -0.29 -14.82 16 6 H 0.05 1.43 7.73 -52.48 -0.41 1.03 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.56 11.30 55.43 0.63 -23.93 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.67 -14.79 5.29 -109.22 -0.58 -15.37 16 14 C 0.05 0.98 4.34 -4.98 -0.02 0.96 16 15 C 0.52 9.07 7.75 -10.98 -0.09 8.99 16 16 O -0.53 -11.08 15.73 5.55 0.09 -10.99 16 17 N -0.62 -8.41 2.41 -172.74 -0.42 -8.82 16 18 C 0.12 1.38 5.83 -3.71 -0.02 1.36 16 19 C -0.11 -1.02 3.21 -90.50 -0.29 -1.31 16 20 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 21 C -0.15 -1.58 8.70 37.16 0.32 -1.25 16 22 C -0.11 -0.92 4.71 -26.69 -0.13 -1.04 16 23 C -0.11 -1.05 2.53 -90.48 -0.23 -1.28 16 24 H 0.08 0.86 6.33 -51.93 -0.33 0.54 16 25 C -0.15 -1.17 9.20 37.16 0.34 -0.83 16 26 C 0.11 1.24 5.63 -3.69 -0.02 1.22 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 1.05 7.87 -51.93 -0.41 0.64 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 2.43 5.97 -51.93 -0.31 2.12 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.34 7.70 8.29 -39.29 -0.33 7.37 16 34 H 0.09 1.57 7.72 -51.93 -0.40 1.17 16 35 H 0.06 1.02 7.67 -51.93 -0.40 0.63 16 36 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 1.05 5.93 -51.93 -0.31 0.74 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -29.30 360.76 -8.89 -38.19 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.59 Total: 6.03 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.44 Total: -6.35 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.37 Total: -48.13 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.30 -8.89 -38.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568408296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.087 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds