Wall clock time and date at job start Tue Mar 31 2020 06:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46769 * 2 1 4 4 N 1.46497 * 109.46906 * 119.99917 * 2 1 3 5 5 C 1.46496 * 120.00352 * 300.00195 * 4 2 1 6 6 C 1.50704 * 109.47056 * 270.00510 * 5 4 2 7 7 H 1.07998 * 120.00154 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99692 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00450 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99776 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47007 * 59.99447 * 10 8 6 12 12 H 1.48503 * 109.47098 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46814 * 299.99562 * 10 8 6 14 14 C 1.34776 * 119.99801 * 120.00617 * 4 2 1 15 15 O 1.21282 * 119.99940 * 180.02562 * 14 4 2 16 16 C 1.50703 * 119.99978 * 359.97438 * 14 4 2 17 17 N 1.46906 * 109.47109 * 180.02562 * 16 14 4 18 18 C 1.48539 * 110.99911 * 52.60277 * 17 16 14 19 19 C 1.54934 * 103.22340 * 159.72267 * 18 17 16 20 20 C 1.54597 * 102.92270 * 322.58191 * 19 18 17 21 21 C 1.52997 * 110.31305 * 263.04131 * 20 19 18 22 22 C 1.53010 * 110.39106 * 140.91817 * 20 19 18 23 23 C 1.47897 * 110.99785 * 170.00020 * 17 16 14 24 24 H 1.08997 * 109.47319 * 299.99788 * 1 2 3 25 25 H 1.09002 * 109.46746 * 60.00148 * 1 2 3 26 26 H 1.09005 * 109.46635 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47319 * 240.00212 * 2 1 3 28 28 H 1.09002 * 109.47258 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47056 * 299.99874 * 3 2 1 30 30 H 1.08997 * 109.47027 * 60.00033 * 3 2 1 31 31 H 1.09002 * 109.47248 * 30.00186 * 5 4 2 32 32 H 1.09000 * 109.47481 * 150.00438 * 5 4 2 33 33 H 0.96994 * 120.00664 * 180.02562 * 9 8 6 34 34 H 1.08992 * 109.46894 * 60.00096 * 16 14 4 35 35 H 1.09004 * 109.47113 * 300.00247 * 16 14 4 36 36 H 1.08998 * 110.66256 * 278.15595 * 18 17 16 37 37 H 1.08992 * 110.66782 * 41.28665 * 18 17 16 38 38 H 1.09000 * 110.72116 * 204.22504 * 19 18 17 39 39 H 1.08998 * 110.87635 * 81.01810 * 19 18 17 40 40 H 1.08993 * 109.47170 * 175.71426 * 21 20 19 41 41 H 1.08996 * 109.46937 * 295.71997 * 21 20 19 42 42 H 1.09005 * 109.46483 * 55.71735 * 21 20 19 43 43 H 1.08999 * 109.46453 * 304.23760 * 22 20 19 44 44 H 1.08997 * 109.46567 * 64.23333 * 22 20 19 45 45 H 1.08997 * 109.46859 * 184.23882 * 22 20 19 46 46 H 1.08997 * 109.92311 * 333.50472 * 23 17 16 47 47 H 1.08994 * 109.92026 * 94.60477 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1902 2.5267 6 6 2.7031 0.8019 2.9830 7 1 3.5431 1.0358 2.3457 8 6 2.5815 1.4100 4.2144 9 7 1.5590 1.1248 4.9907 10 14 3.8694 2.6391 4.7803 11 1 3.9249 3.7736 3.8237 12 1 3.5105 3.1465 6.1290 13 1 5.1963 1.9747 4.8377 14 6 2.7933 -1.7863 1.0725 15 8 3.1971 -2.3583 2.0628 16 6 3.1570 -2.3014 -0.2963 17 7 4.0012 -3.4961 -0.1615 18 6 3.3629 -4.5016 0.7262 19 6 4.0776 -5.8206 0.3391 20 6 4.2574 -5.6805 -1.1900 21 6 3.1332 -6.4119 -1.9262 22 6 5.6187 -6.2315 -1.6194 23 6 4.1818 -4.1675 -1.4669 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.6904 0.2973 2.4844 32 1 1.6238 -1.0227 3.2291 33 1 1.4732 1.5529 5.8568 34 1 3.7017 -1.5308 -0.8415 35 1 2.2485 -2.5585 -0.8410 36 1 3.5431 -4.2595 1.7736 37 1 2.2940 -4.5695 0.5244 38 1 3.4530 -6.6817 0.5767 39 1 5.0447 -5.8986 0.8357 40 1 3.2298 -6.2412 -2.9984 41 1 3.1996 -7.4803 -1.7210 42 1 2.1694 -6.0353 -1.5837 43 1 6.4072 -5.7276 -1.0605 44 1 5.6574 -7.3019 -1.4176 45 1 5.7611 -6.0574 -2.6859 46 1 3.3337 -3.9509 -2.1164 47 1 5.1048 -3.8261 -1.9355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570376095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:23 Heat of formation + Delta-G solvation = -36.267807 kcal Electronic energy + Delta-G solvation = -23716.902184 eV Core-core repulsion = 20513.495378 eV Total energy + Delta-G solvation = -3203.406805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.91976 -38.58081 -35.97410 -34.00037 -32.76335 -30.84659 -29.94499 -28.29681 -27.45887 -26.78871 -26.45044 -24.32303 -22.63734 -21.38099 -20.95930 -19.16343 -17.91480 -16.66716 -16.42054 -15.70419 -15.38287 -14.83406 -14.66845 -14.17556 -14.02297 -13.67505 -13.51176 -13.46207 -13.16575 -12.95908 -12.47832 -12.41662 -12.25690 -11.80129 -11.65190 -11.62384 -11.56267 -11.49372 -11.18586 -11.12270 -10.88796 -10.83755 -10.71404 -10.59912 -10.55104 -10.44396 -10.30979 -9.95050 -9.49450 -8.71787 -8.37823 -8.14360 -7.58767 -5.99404 -4.02384 3.34728 3.39318 3.40931 3.48455 3.77961 4.28882 4.48016 4.53142 4.67038 4.79874 5.06887 5.23627 5.29292 5.34671 5.39142 5.40345 5.42185 5.49283 5.52473 5.57296 5.62569 5.66758 5.69772 5.81841 5.82992 5.91201 6.00404 6.01116 6.11635 6.15634 6.21696 6.26649 6.33256 6.37834 6.55264 6.60694 6.96948 7.05787 7.10122 7.24343 7.50878 7.63141 7.97805 8.30044 8.49278 8.96793 9.17527 9.61706 11.08703 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.004375 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.552036 B = 6397.876275 C = 6973.024944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.593 5.593 5 C 0.248 3.752 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.897 5.897 10 Si 0.894 3.106 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.506 3.494 15 O -0.527 6.527 16 C 0.028 3.972 17 N -0.498 5.498 18 C 0.035 3.965 19 C -0.117 4.117 20 C -0.078 4.078 21 C -0.137 4.137 22 C -0.134 4.134 23 C 0.043 3.957 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.115 0.885 37 H 0.033 0.967 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.879 -10.170 -16.036 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 C -0.215 4.215 4 N -0.326 5.326 5 C 0.129 3.871 6 C -0.556 4.556 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.292 3.708 15 O -0.403 6.403 16 C -0.104 4.104 17 N -0.222 5.222 18 C -0.092 4.092 19 C -0.155 4.155 20 C -0.079 4.079 21 C -0.195 4.195 22 C -0.191 4.191 23 C -0.085 4.085 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.133 0.867 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.488 -10.224 -15.098 18.294 hybrid contribution -0.177 0.668 -0.108 0.699 sum 1.311 -9.556 -15.206 18.007 Atomic orbital electron populations 1.22157 0.95661 1.01647 1.02471 1.20982 0.94041 0.94226 0.87889 1.22136 1.01416 0.95631 1.02274 1.48324 1.49228 1.26463 1.08605 1.19208 0.95793 0.94911 0.77194 1.21408 1.08845 1.23340 1.02054 0.92426 1.24915 0.95717 0.97139 0.96341 1.69915 1.29561 1.43428 1.10706 0.86618 0.82161 0.81284 0.77712 1.20320 1.21302 1.20223 1.20110 0.79181 0.81228 0.90296 1.90594 1.52759 1.57425 1.39555 1.22298 0.96342 0.94964 0.96749 1.64648 1.44358 1.04650 1.08593 1.23490 0.95197 0.89510 1.01020 1.22683 1.01310 0.97595 0.93888 1.21420 0.95843 0.94529 0.96107 1.21895 0.97786 1.00022 0.99769 1.21839 0.95912 1.00549 1.00847 1.23070 1.01113 0.92753 0.91569 0.91232 0.92313 0.93098 0.91035 0.92693 0.93328 0.90033 0.94899 0.94160 0.92797 0.88552 0.92834 0.86663 0.94823 0.91433 0.90706 0.92718 0.92523 0.92806 0.92079 0.92799 0.92895 0.94013 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.17 37.16 0.34 -2.02 16 2 C 0.13 2.18 3.17 -67.93 -0.22 1.96 16 3 C -0.16 -2.59 8.47 37.16 0.31 -2.28 16 4 N -0.59 -12.43 2.39 -167.47 -0.40 -12.83 16 5 C 0.25 6.38 4.60 -5.19 -0.02 6.36 16 6 C -0.52 -14.43 7.83 -34.44 -0.27 -14.70 16 7 H 0.06 1.62 7.63 -52.49 -0.40 1.22 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 10 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.51 10.60 7.38 -10.98 -0.08 10.52 16 15 O -0.53 -13.12 13.10 5.56 0.07 -13.05 16 16 C 0.03 0.45 3.83 -4.97 -0.02 0.43 16 17 N -0.50 -7.86 5.26 -231.89 -1.22 -9.08 16 18 C 0.03 0.55 5.30 -1.90 -0.01 0.54 16 19 C -0.12 -1.45 6.16 -24.87 -0.15 -1.61 16 20 C -0.08 -0.84 0.97 -153.14 -0.15 -0.99 16 21 C -0.14 -1.26 8.21 37.16 0.30 -0.95 16 22 C -0.13 -1.24 8.24 37.16 0.31 -0.94 16 23 C 0.04 0.52 6.02 -2.75 -0.02 0.51 16 24 H 0.07 1.16 6.66 -51.93 -0.35 0.82 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.98 5.77 -51.93 -0.30 0.68 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 31 H 0.03 0.86 6.43 -51.93 -0.33 0.52 16 32 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.10 1.42 7.79 -51.93 -0.40 1.01 16 35 H 0.05 0.75 7.46 -51.93 -0.39 0.36 16 36 H 0.12 2.23 5.97 -51.93 -0.31 1.92 16 37 H 0.03 0.53 8.02 -51.93 -0.42 0.11 16 38 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 39 H 0.07 0.95 7.85 -51.93 -0.41 0.55 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.04 0.47 7.11 -51.93 -0.37 0.10 16 47 H 0.08 0.90 7.69 -51.93 -0.40 0.50 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -31.50 359.94 -8.76 -40.26 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.59 Total: -0.32 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 0.23 Total: -1.54 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.88 Total: -47.75 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.07 Total: -13.05 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.50 -8.76 -40.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570376095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.994 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds