Wall clock time and date at job start Tue Mar 31 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46717 * 2 1 4 4 H 1.09000 * 109.47627 * 304.10169 * 3 2 1 5 5 C 1.50699 * 109.46975 * 184.10350 * 3 2 1 6 6 H 1.08001 * 119.99920 * 245.57346 * 5 3 2 7 7 C 1.37876 * 120.00285 * 65.57253 * 5 3 2 8 8 N 1.31513 * 120.00168 * 195.48371 * 7 5 3 9 9 Si 1.86798 * 119.99663 * 15.47807 * 7 5 3 10 10 H 1.48500 * 109.47018 * 86.56710 * 9 7 5 11 11 H 1.48504 * 109.47269 * 206.56460 * 9 7 5 12 12 H 1.48499 * 109.47453 * 326.56747 * 9 7 5 13 13 N 1.46900 * 109.47444 * 64.10463 * 3 2 1 14 14 C 1.46894 * 111.00117 * 257.82414 * 13 3 2 15 15 H 1.09007 * 109.47458 * 35.50863 * 14 13 3 16 16 C 1.53003 * 109.47255 * 275.51064 * 14 13 3 17 17 C 1.50703 * 109.47366 * 155.50805 * 14 13 3 18 18 O 1.21279 * 120.00083 * 16.53760 * 17 14 13 19 19 N 1.34776 * 119.99956 * 196.54456 * 17 14 13 20 20 C 1.44581 * 118.64255 * 184.55819 * 19 17 14 21 21 C 1.54308 * 109.90581 * 270.85307 * 20 19 17 22 22 C 1.47102 * 110.29204 * 288.75525 * 21 20 19 23 23 C 1.52562 * 114.32464 * 62.73013 * 22 21 20 24 24 C 1.50874 * 109.36080 * 274.98066 * 23 22 21 25 25 C 1.47603 * 118.64501 * 4.81560 * 19 17 14 26 26 H 1.08998 * 109.47280 * 176.53373 * 1 2 3 27 27 H 1.09004 * 109.47305 * 296.53341 * 1 2 3 28 28 H 1.08999 * 109.47170 * 56.53572 * 1 2 3 29 29 H 1.09002 * 109.47269 * 119.99807 * 2 1 3 30 30 H 1.08993 * 109.47123 * 240.00266 * 2 1 3 31 31 H 0.97007 * 119.99530 * 179.97438 * 8 7 5 32 32 H 1.00898 * 111.00077 * 21.77566 * 13 3 2 33 33 H 1.08999 * 109.47149 * 64.98402 * 16 14 13 34 34 H 1.08998 * 109.46814 * 184.98648 * 16 14 13 35 35 H 1.09005 * 109.46490 * 304.98414 * 16 14 13 36 36 H 1.09007 * 109.45109 * 30.75514 * 20 19 17 37 37 H 1.08995 * 109.45397 * 150.67782 * 20 19 17 38 38 H 1.09001 * 109.40107 * 168.46808 * 21 20 19 39 39 H 1.09004 * 109.28569 * 48.97001 * 21 20 19 40 40 H 1.08996 * 108.50974 * 301.47989 * 22 21 20 41 41 H 1.08996 * 108.38966 * 183.90077 * 22 21 20 42 42 H 1.09008 * 109.49000 * 155.01570 * 23 22 21 43 43 H 1.08999 * 109.49326 * 34.94980 * 23 22 21 44 44 H 1.09009 * 109.36658 * 331.69790 * 24 23 22 45 45 H 1.08995 * 109.37312 * 212.08227 * 24 23 22 46 46 H 1.09005 * 108.95143 * 258.55713 * 25 19 17 47 47 H 1.08996 * 108.94931 * 17.27735 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6178 1.9772 -0.8509 5 6 3.5435 1.4438 -0.1017 6 1 4.1400 1.8106 0.7205 7 6 4.1576 0.9767 -1.2443 8 7 5.4410 0.6900 -1.2308 9 14 3.1666 0.7510 -2.8116 10 1 3.1323 2.0307 -3.5641 11 1 3.7985 -0.2994 -3.6499 12 1 1.7812 0.3423 -2.4668 13 7 1.6328 2.1059 1.2459 14 6 0.4806 2.9885 1.0202 15 1 -0.1783 2.5427 0.2750 16 6 0.9704 4.3487 0.5191 17 6 -0.2733 3.1709 2.3123 18 8 0.2523 2.8834 3.3668 19 7 -1.5315 3.6535 2.2961 20 6 -2.1915 3.9109 3.5565 21 6 -2.9332 2.6432 4.0296 22 6 -4.1113 2.3960 3.1841 23 6 -3.7867 2.1211 1.7189 24 6 -3.6499 3.4309 0.9828 25 6 -2.1811 3.8921 0.9923 26 1 -0.3634 -1.0258 -0.0621 27 1 -0.3634 0.4591 0.9194 28 1 -0.3633 0.5667 -0.8573 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 5.8729 0.3610 -2.0346 32 1 1.4341 1.4293 1.9675 33 1 1.4380 4.2290 -0.4581 34 1 0.1247 5.0313 0.4362 35 1 1.6974 4.7546 1.2226 36 1 -1.4495 4.1917 4.3040 37 1 -2.9067 4.7239 3.4324 38 1 -3.2524 2.7751 5.0635 39 1 -2.2597 1.7883 3.9689 40 1 -4.7638 3.2674 3.2364 41 1 -4.6492 1.5376 3.5864 42 1 -4.5900 1.5351 1.2722 43 1 -2.8508 1.5666 1.6516 44 1 -4.2687 4.1852 1.4689 45 1 -3.9819 3.3030 -0.0475 46 1 -2.1434 4.9581 0.7677 47 1 -1.6359 3.3487 0.2206 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574337772.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:08 Heat of formation + Delta-G solvation = -60.224138 kcal Electronic energy + Delta-G solvation = -24363.629518 eV Core-core repulsion = 21159.183888 eV Total energy + Delta-G solvation = -3204.445630 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61173 -38.99601 -38.01229 -35.27047 -34.58262 -33.72284 -33.22973 -30.59560 -28.72053 -27.98643 -26.42206 -24.92757 -23.99497 -22.31394 -21.65612 -21.26425 -19.81930 -18.84105 -18.08414 -17.51473 -17.01472 -16.53417 -16.29552 -15.70538 -15.37509 -15.23486 -14.90554 -14.80041 -14.51652 -14.32195 -14.16051 -13.76507 -13.59556 -13.47476 -13.20517 -13.06754 -12.91937 -12.68436 -12.54801 -12.44407 -12.34127 -12.23087 -11.96454 -11.69411 -11.60381 -11.48495 -11.35248 -11.29391 -11.27172 -10.63813 -10.45674 -9.61091 -9.00871 -8.23554 -6.21036 1.37194 1.39237 1.48787 1.58904 2.00800 2.39523 3.08360 3.40351 3.49731 3.72434 3.95716 4.00694 4.06018 4.15568 4.21921 4.24550 4.29675 4.32511 4.43052 4.44355 4.59370 4.69756 4.70686 4.74268 4.80855 4.85679 4.92197 4.97902 5.02356 5.07499 5.13132 5.18075 5.22490 5.27373 5.29964 5.34266 5.38685 5.47222 5.48389 5.73515 5.76117 6.04435 6.30648 6.65927 6.75382 6.84366 7.20666 7.41515 8.94459 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024941 B = 0.004950 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.380300 B = 5654.842913 C = 5914.158779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.153 4.153 3 C 0.204 3.796 4 H 0.034 0.966 5 C -0.506 4.506 6 H 0.023 0.977 7 C 0.012 3.988 8 N -0.949 5.949 9 Si 0.929 3.071 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.221 1.221 13 N -0.674 5.674 14 C 0.067 3.933 15 H 0.080 0.920 16 C -0.129 4.129 17 C 0.509 3.491 18 O -0.571 6.571 19 N -0.596 5.596 20 C 0.116 3.884 21 C -0.130 4.130 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.124 4.124 25 C 0.092 3.908 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.263 0.737 32 H 0.333 0.667 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.032 0.968 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.496 6.748 2.188 27.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.192 4.192 3 C 0.095 3.905 4 H 0.052 0.948 5 C -0.545 4.545 6 H 0.042 0.958 7 C -0.185 4.185 8 N -0.589 5.589 9 Si 0.752 3.248 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.144 1.144 13 N -0.306 5.306 14 C -0.046 4.046 15 H 0.097 0.903 16 C -0.187 4.187 17 C 0.297 3.703 18 O -0.450 6.450 19 N -0.328 5.328 20 C -0.007 4.007 21 C -0.169 4.169 22 C -0.152 4.152 23 C -0.158 4.158 24 C -0.162 4.162 25 C -0.029 4.029 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.103 0.897 45 H 0.113 0.887 46 H 0.106 0.894 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.669 7.074 2.600 26.752 hybrid contribution 0.248 -1.071 -0.483 1.201 sum -25.421 6.002 2.118 26.205 Atomic orbital electron populations 1.21812 0.94947 1.02193 1.00997 1.22511 0.95881 0.99738 1.01075 1.19390 0.93408 0.89636 0.88066 0.94826 1.21232 0.91611 1.40385 1.01251 0.95833 1.25821 0.95805 0.94389 1.02472 1.70147 1.13174 1.46021 1.29600 0.86164 0.81452 0.78188 0.78951 1.19635 1.21736 1.14396 1.60397 1.35234 1.25402 1.09596 1.21734 0.91733 0.97223 0.93897 0.90268 1.21712 1.01584 0.94098 1.01288 1.20980 0.82182 0.76314 0.90842 1.90661 1.69262 1.51037 1.34041 1.47765 1.12845 1.64092 1.08137 1.21392 0.96585 0.97992 0.84754 1.21061 0.97622 0.97642 1.00534 1.20447 0.97349 1.02498 0.94866 1.21093 1.01155 0.97899 0.95606 1.21769 0.94344 0.97410 1.02638 1.22423 0.95023 1.02540 0.82924 0.91658 0.93711 0.92017 0.93817 0.92739 0.92770 0.84825 0.92111 0.89304 0.93770 0.92418 0.87707 0.89971 0.94939 0.90272 0.92423 0.90728 0.94271 0.89735 0.88742 0.89385 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 8.67 71.98 0.62 -3.82 16 2 C -0.15 -6.35 4.59 30.59 0.14 -6.21 16 3 C 0.20 9.44 1.57 44.17 0.07 9.51 16 4 H 0.03 1.49 5.82 -2.39 -0.01 1.48 16 5 C -0.51 -29.78 9.26 25.60 0.24 -29.54 16 6 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 7 C 0.01 0.70 5.34 84.65 0.45 1.15 16 8 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 9 Si 0.93 42.63 25.85 68.60 1.77 44.40 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.22 -8.85 5.51 99.48 0.55 -8.30 16 13 N -0.67 -29.30 5.66 -477.15 -2.70 -32.00 16 14 C 0.07 2.23 1.23 44.17 0.05 2.28 16 15 H 0.08 2.31 4.41 -2.38 -0.01 2.30 16 16 C -0.13 -3.99 9.24 71.98 0.67 -3.33 16 17 C 0.51 16.37 6.75 87.66 0.59 16.96 16 18 O -0.57 -23.45 15.46 -3.03 -0.05 -23.50 16 19 N -0.60 -13.37 2.25 -819.29 -1.84 -15.21 16 20 C 0.12 2.29 5.30 87.18 0.46 2.75 16 21 C -0.13 -2.44 5.72 29.20 0.17 -2.27 16 22 C -0.11 -1.59 5.15 28.61 0.15 -1.44 16 23 C -0.12 -1.71 5.51 29.76 0.16 -1.55 16 24 C -0.12 -1.31 5.71 30.22 0.17 -1.14 16 25 C 0.09 1.40 4.99 86.49 0.43 1.83 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.37 6.78 -2.38 -0.02 1.35 16 28 H 0.06 1.73 7.99 -2.39 -0.02 1.72 16 29 H 0.04 1.92 8.06 -2.39 -0.02 1.90 16 30 H 0.05 2.35 4.97 -2.39 -0.01 2.34 16 31 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 32 H 0.33 14.95 6.92 -89.70 -0.62 14.33 16 33 H 0.06 2.00 7.78 -2.39 -0.02 1.98 16 34 H 0.09 1.98 6.99 -2.39 -0.02 1.96 16 35 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.06 1.43 7.37 -2.38 -0.02 1.41 16 37 H 0.10 1.38 8.06 -2.39 -0.02 1.36 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.80 7.36 -2.39 -0.02 0.78 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.04 0.78 7.48 -2.39 -0.02 0.77 16 44 H 0.08 0.65 7.32 -2.38 -0.02 0.63 16 45 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.09 1.01 7.95 -2.38 -0.02 0.99 16 47 H 0.08 1.34 5.40 -2.39 -0.01 1.33 16 Total: -1.00 -74.81 345.94 2.02 -72.78 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.16 Total: 28.61 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 4.38 Total: -14.82 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -4.24 Total: -107.48 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.77 Total: 44.40 kcal Total: -74.81 2.02 -72.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574337772.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.558 kcal (2) G-P(sol) polarization free energy of solvation -74.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds