Wall clock time and date at job start Tue Mar 31 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47108 * 2 1 4 4 H 1.09000 * 109.47066 * 56.55307 * 3 2 1 5 5 C 1.50695 * 109.46626 * 176.55210 * 3 2 1 6 6 H 1.08011 * 119.99882 * 120.00171 * 5 3 2 7 7 C 1.37875 * 120.00305 * 299.99288 * 5 3 2 8 8 N 1.31512 * 119.99859 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99966 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47179 * 60.00855 * 9 7 5 11 11 H 1.48502 * 109.46982 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47408 * 300.00571 * 9 7 5 13 13 N 1.46897 * 109.46960 * 296.54983 * 3 2 1 14 14 C 1.46906 * 111.00014 * 156.34993 * 13 3 2 15 15 H 1.08997 * 109.46418 * 35.70632 * 14 13 3 16 16 C 1.52994 * 109.47084 * 275.70744 * 14 13 3 17 17 C 1.50696 * 109.46943 * 155.70537 * 14 13 3 18 18 O 1.21281 * 120.00197 * 10.85676 * 17 14 13 19 19 N 1.34780 * 119.99583 * 190.58072 * 17 14 13 20 20 C 1.44585 * 118.63831 * 183.44524 * 19 17 14 21 21 C 1.54308 * 109.90679 * 270.85180 * 20 19 17 22 22 C 1.47091 * 110.29793 * 288.76055 * 21 20 19 23 23 C 1.52567 * 114.32481 * 62.73270 * 22 21 20 24 24 C 1.50881 * 109.35580 * 274.97975 * 23 22 21 25 25 C 1.47599 * 118.64288 * 3.71303 * 19 17 14 26 26 H 1.08988 * 109.47486 * 185.10189 * 1 2 3 27 27 H 1.09003 * 109.46872 * 305.10492 * 1 2 3 28 28 H 1.08996 * 109.46664 * 65.09838 * 1 2 3 29 29 H 1.08999 * 109.46891 * 239.99899 * 2 1 3 30 30 H 1.08998 * 109.47026 * 119.99281 * 2 1 3 31 31 H 0.97008 * 119.99785 * 179.97438 * 8 7 5 32 32 H 1.00895 * 111.00230 * 280.30474 * 13 3 2 33 33 H 1.08999 * 109.47410 * 304.96623 * 16 14 13 34 34 H 1.09005 * 109.47319 * 64.96897 * 16 14 13 35 35 H 1.09001 * 109.47105 * 184.96783 * 16 14 13 36 36 H 1.08997 * 109.44887 * 30.76772 * 20 19 17 37 37 H 1.08999 * 109.44191 * 150.68419 * 20 19 17 38 38 H 1.09007 * 109.39735 * 168.46956 * 21 20 19 39 39 H 1.08995 * 109.14325 * 48.89410 * 21 20 19 40 40 H 1.09001 * 108.51412 * 301.48393 * 22 21 20 41 41 H 1.08993 * 108.39123 * 183.90136 * 22 21 20 42 42 H 1.09007 * 109.48985 * 155.01479 * 23 22 21 43 43 H 1.08999 * 109.48858 * 34.95020 * 23 22 21 44 44 H 1.08994 * 109.36778 * 331.69425 * 24 23 22 45 45 H 1.09007 * 109.36483 * 212.07672 * 24 23 22 46 46 H 1.09000 * 108.94713 * 258.55142 * 25 19 17 47 47 H 1.08999 * 108.95161 * 17.27126 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6272 1.9739 0.8575 5 6 3.5446 1.4433 0.0854 6 1 4.1300 1.8949 -0.7019 7 6 4.1739 0.8676 1.1687 8 7 3.4611 0.3174 2.1273 9 14 6.0389 0.8692 1.2749 10 1 6.5335 2.2694 1.2753 11 1 6.4639 0.1933 2.5270 12 1 6.6019 0.1457 0.1067 13 7 1.6196 2.1105 -1.2389 14 6 1.5762 3.5683 -1.0625 15 1 2.3846 3.8782 -0.4003 16 6 0.2328 3.9679 -0.4490 17 6 1.7373 4.2413 -2.4011 18 8 1.6772 3.5865 -3.4202 19 7 1.9426 5.5718 -2.4660 20 6 2.0178 6.1987 -3.7667 21 6 3.4753 6.1850 -4.2731 22 6 4.2933 7.1313 -3.4992 23 6 4.4044 6.7979 -2.0145 24 6 3.2161 7.3717 -1.2829 25 6 2.0873 6.3276 -1.2066 26 1 -0.3634 -1.0235 0.0914 27 1 -0.3633 0.5910 0.8408 28 1 -0.3632 0.4327 -0.9321 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.9039 -0.0880 2.8893 32 1 2.2211 1.8572 -2.0084 33 1 -0.5780 3.5810 -1.0662 34 1 0.1544 3.5529 0.5559 35 1 0.1650 5.0547 -0.3995 36 1 1.3890 5.6525 -4.4698 37 1 1.6695 7.2290 -3.6936 38 1 3.4956 6.4676 -5.3257 39 1 3.8831 5.1804 -4.1615 40 1 3.8592 8.1261 -3.5988 41 1 5.2960 7.1482 -3.9260 42 1 5.3216 7.2285 -1.6127 43 1 4.4232 5.7157 -1.8853 44 1 2.8572 8.2541 -1.8125 45 1 3.5154 7.6549 -0.2737 46 1 1.1484 6.8369 -0.9895 47 1 2.3063 5.6300 -0.3982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574337773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:11 Heat of formation + Delta-G solvation = -67.108498 kcal Electronic energy + Delta-G solvation = -24197.287678 eV Core-core repulsion = 20992.543520 eV Total energy + Delta-G solvation = -3204.744158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54691 -38.83922 -37.75759 -35.33250 -34.58469 -33.57201 -33.08222 -30.57822 -28.00543 -27.91937 -26.38636 -25.15439 -24.05546 -22.22338 -21.42326 -21.21819 -19.68986 -18.72357 -18.06564 -17.48897 -16.87231 -16.66563 -16.07949 -15.58358 -15.37816 -15.26817 -14.90116 -14.60077 -14.40388 -14.13676 -13.89996 -13.53266 -13.50328 -13.20939 -13.14948 -13.09438 -12.91525 -12.71141 -12.54961 -12.48011 -12.28679 -12.07108 -11.96904 -11.64036 -11.53338 -11.49076 -11.47905 -11.29013 -11.05042 -10.52825 -10.46580 -9.59706 -9.10617 -8.07100 -6.29223 1.35241 1.37694 1.44571 1.62913 2.05462 2.38042 3.12088 3.50121 3.63686 3.71312 3.94184 4.01472 4.14142 4.16612 4.26409 4.34748 4.47656 4.58253 4.62058 4.69090 4.69894 4.76621 4.80437 4.83856 4.93459 4.96971 4.99806 5.06855 5.17328 5.18826 5.23579 5.26644 5.32399 5.36699 5.43180 5.44825 5.50461 5.61931 5.74737 5.77956 6.07365 6.17072 6.26444 6.40755 6.74270 6.94804 7.23048 7.41807 8.89007 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.005958 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.307542 B = 4698.146958 C = 5728.062245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.226 3.774 4 H 0.015 0.985 5 C -0.563 4.563 6 H 0.038 0.962 7 C 0.028 3.972 8 N -0.905 5.905 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.279 1.279 13 N -0.668 5.668 14 C 0.072 3.928 15 H 0.057 0.943 16 C -0.122 4.122 17 C 0.510 3.490 18 O -0.572 6.572 19 N -0.597 5.597 20 C 0.117 3.883 21 C -0.131 4.131 22 C -0.112 4.112 23 C -0.122 4.122 24 C -0.123 4.123 25 C 0.095 3.905 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.019 0.981 30 H 0.065 0.935 31 H 0.264 0.736 32 H 0.327 0.673 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.026 0.974 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.028 0.972 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 17.495 -6.009 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.033 0.967 5 C -0.602 4.602 6 H 0.057 0.943 7 C -0.173 4.173 8 N -0.543 5.543 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.205 1.205 13 N -0.299 5.299 14 C -0.042 4.042 15 H 0.074 0.926 16 C -0.180 4.180 17 C 0.299 3.701 18 O -0.451 6.451 19 N -0.330 5.330 20 C -0.006 4.006 21 C -0.170 4.170 22 C -0.149 4.149 23 C -0.160 4.160 24 C -0.161 4.161 25 C -0.027 4.027 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.045 0.955 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.163 17.025 -6.239 18.406 hybrid contribution 2.277 -0.520 0.204 2.344 sum -0.887 16.505 -6.035 17.596 Atomic orbital electron populations 1.21530 0.96191 0.99579 1.00652 1.21371 0.94587 0.98395 0.99832 1.18988 0.91152 0.91459 0.86656 0.96663 1.22064 0.94075 1.38238 1.05848 0.94340 1.25551 1.01811 0.94601 0.95289 1.69971 1.36433 1.37937 1.09976 0.85845 0.81472 0.78347 0.77371 1.19762 1.20353 1.20510 1.60857 1.57056 1.04367 1.07667 1.21438 0.99704 0.90213 0.92834 0.92564 1.21692 0.94252 1.01591 1.00505 1.21033 0.75058 0.82882 0.91157 1.90616 1.52083 1.64677 1.37741 1.47748 1.70649 1.06540 1.08038 1.21404 0.96651 0.99063 0.83509 1.21082 0.96020 0.99039 1.00838 1.20432 1.00061 0.99942 0.94513 1.21106 0.99123 0.99690 0.96110 1.21765 0.93915 0.97920 1.02493 1.22379 1.00620 0.95316 0.84336 0.93793 0.94309 0.92993 0.96191 0.91617 0.92676 0.85561 0.92540 0.92468 0.89670 0.91964 0.87450 0.89465 0.95522 0.89729 0.92526 0.91050 0.95261 0.89085 0.89217 0.88900 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.72 71.98 0.70 -4.40 16 2 C -0.10 -5.13 5.44 30.60 0.17 -4.97 16 3 C 0.23 11.45 1.81 44.17 0.08 11.53 16 4 H 0.02 0.84 7.11 -2.39 -0.02 0.82 16 5 C -0.56 -31.13 8.19 25.60 0.21 -30.92 16 6 H 0.04 2.17 7.76 -2.90 -0.02 2.15 16 7 C 0.03 1.56 5.30 84.65 0.45 2.00 16 8 N -0.90 -51.12 11.30 21.45 0.24 -50.88 16 9 Si 0.94 43.64 29.54 68.60 2.03 45.67 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 13 N -0.67 -30.41 5.34 -477.17 -2.55 -32.95 16 14 C 0.07 2.73 1.99 44.16 0.09 2.82 16 15 H 0.06 2.31 6.09 -2.39 -0.01 2.30 16 16 C -0.12 -3.87 9.09 71.98 0.65 -3.21 16 17 C 0.51 18.51 6.85 87.66 0.60 19.11 16 18 O -0.57 -24.90 15.31 -3.03 -0.05 -24.94 16 19 N -0.60 -15.92 2.25 -819.30 -1.84 -17.76 16 20 C 0.12 2.63 5.31 87.18 0.46 3.09 16 21 C -0.13 -2.93 5.72 29.20 0.17 -2.77 16 22 C -0.11 -2.04 5.15 28.61 0.15 -1.89 16 23 C -0.12 -2.54 5.51 29.76 0.16 -2.38 16 24 C -0.12 -1.97 5.71 30.23 0.17 -1.80 16 25 C 0.09 1.94 4.68 86.49 0.40 2.34 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 28 H 0.05 2.12 7.85 -2.39 -0.02 2.10 16 29 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 3.60 5.98 -2.39 -0.01 3.59 16 31 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 32 H 0.33 16.21 7.38 -89.70 -0.66 15.55 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.92 7.43 -2.38 -0.02 1.90 16 35 H 0.08 2.04 6.13 -2.39 -0.01 2.03 16 36 H 0.06 1.65 7.35 -2.39 -0.02 1.63 16 37 H 0.11 1.64 8.06 -2.39 -0.02 1.62 16 38 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 1.11 7.36 -2.39 -0.02 1.09 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.03 0.83 7.48 -2.39 -0.02 0.82 16 44 H 0.09 1.03 7.32 -2.39 -0.02 1.02 16 45 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.09 1.41 7.67 -2.39 -0.02 1.39 16 47 H 0.07 1.79 5.33 -2.39 -0.01 1.77 16 Total: -1.00 -65.34 353.42 2.57 -62.77 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.27 Total: 29.53 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.47 Total: -11.43 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -4.15 Total: -101.59 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -65.34 2.57 -62.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574337773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.338 kcal (2) G-P(sol) polarization free energy of solvation -65.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds