Wall clock time and date at job start Tue Mar 31 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 H 1.09001 * 109.46960 * 304.95890 * 3 2 1 5 5 C 1.50696 * 109.47259 * 184.96483 * 3 2 1 6 6 H 1.08005 * 119.99824 * 239.99929 * 5 3 2 7 7 C 1.37876 * 120.00367 * 59.99399 * 5 3 2 8 8 N 1.31514 * 119.99699 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00348 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46861 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47181 * 120.00135 * 9 7 5 12 12 H 1.48498 * 109.47461 * 240.00232 * 9 7 5 13 13 N 1.46892 * 109.47447 * 64.95935 * 3 2 1 14 14 C 1.46907 * 111.00390 * 208.90610 * 13 3 2 15 15 H 1.08997 * 109.46566 * 328.92469 * 14 13 3 16 16 C 1.53000 * 109.46957 * 88.92495 * 14 13 3 17 17 C 1.50702 * 109.47282 * 208.92604 * 14 13 3 18 18 O 1.21280 * 119.99542 * 354.16852 * 17 14 13 19 19 N 1.34769 * 119.99693 * 174.16507 * 17 14 13 20 20 C 1.44585 * 118.64067 * 176.04769 * 19 17 14 21 21 C 1.54305 * 109.91422 * 270.85808 * 20 19 17 22 22 C 1.47091 * 110.29221 * 288.75904 * 21 20 19 23 23 C 1.52564 * 114.32822 * 62.73263 * 22 21 20 24 24 C 1.50877 * 109.35316 * 274.97572 * 23 22 21 25 25 C 1.47596 * 118.64757 * 356.32048 * 19 17 14 26 26 H 1.09001 * 109.47206 * 304.75502 * 1 2 3 27 27 H 1.08999 * 109.47558 * 64.76064 * 1 2 3 28 28 H 1.09007 * 109.47113 * 184.76199 * 1 2 3 29 29 H 1.08996 * 109.47301 * 239.99661 * 2 1 3 30 30 H 1.09001 * 109.47304 * 119.99727 * 2 1 3 31 31 H 0.96999 * 119.99939 * 180.02562 * 8 7 5 32 32 H 1.00898 * 111.00593 * 332.86186 * 13 3 2 33 33 H 1.09000 * 109.46811 * 54.57844 * 16 14 13 34 34 H 1.09002 * 109.46741 * 174.57681 * 16 14 13 35 35 H 1.09003 * 109.47297 * 294.57905 * 16 14 13 36 36 H 1.09002 * 109.44863 * 30.76838 * 20 19 17 37 37 H 1.09004 * 109.44844 * 150.68406 * 20 19 17 38 38 H 1.08995 * 109.40058 * 168.46951 * 21 20 19 39 39 H 1.09002 * 109.28137 * 48.96983 * 21 20 19 40 40 H 1.08999 * 108.51632 * 301.47230 * 22 21 20 41 41 H 1.08997 * 108.38893 * 183.89232 * 22 21 20 42 42 H 1.09002 * 109.49308 * 155.01324 * 23 22 21 43 43 H 1.09000 * 109.49315 * 34.94305 * 23 22 21 44 44 H 1.08993 * 109.37454 * 331.69796 * 24 23 22 45 45 H 1.09006 * 109.36887 * 212.07356 * 24 23 22 46 46 H 1.09004 * 108.94872 * 258.55161 * 25 19 17 47 47 H 1.08998 * 108.95109 * 17.26738 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9813 -0.8423 5 6 3.5419 1.4443 -0.1230 6 1 4.1467 1.8891 0.6535 7 6 4.1440 0.8781 -1.2265 8 7 3.4075 0.3369 -2.1722 9 14 6.0058 0.8798 -1.3786 10 1 6.5988 1.5443 -0.1903 11 1 6.4970 -0.5193 -1.4594 12 1 6.4016 1.6151 -2.6065 13 7 1.6505 2.0996 1.2547 14 6 1.4817 3.5460 1.0613 15 1 2.1624 3.8903 0.2827 16 6 0.0393 3.8398 0.6442 17 6 1.7882 4.2644 2.3501 18 8 2.0116 3.6302 3.3594 19 7 1.8140 5.6115 2.3809 20 6 2.0254 6.2717 3.6498 21 6 0.6708 6.5147 4.3478 22 6 -0.0820 7.5671 3.6483 23 6 -0.4532 7.2232 2.2090 24 6 0.6981 7.5724 1.2986 25 6 1.6194 6.3521 1.1191 26 1 -0.3634 0.5858 0.8443 27 1 -0.3634 0.4382 -0.9295 28 1 -0.3634 -1.0242 0.0853 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8310 -0.0618 -2.9484 32 1 0.8127 1.6855 1.6350 33 1 -0.6451 3.4104 1.3758 34 1 -0.1120 4.9181 0.5942 35 1 -0.1527 3.4002 -0.3347 36 1 2.6488 5.6438 4.2862 37 1 2.5235 7.2269 3.4834 38 1 0.8449 6.8207 5.3794 39 1 0.0916 5.5914 4.3408 40 1 0.5183 8.4768 3.6430 41 1 -0.9987 7.7619 4.2049 42 1 -1.3350 7.7925 1.9149 43 1 -0.6664 6.1570 2.1332 44 1 1.2671 8.3938 1.7340 45 1 0.3106 7.8788 0.3269 46 1 2.5891 6.6912 0.7546 47 1 1.1783 5.6829 0.3804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574337774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:15 Heat of formation + Delta-G solvation = -38.017599 kcal Electronic energy + Delta-G solvation = -24133.625612 eV Core-core repulsion = 20930.142930 eV Total energy + Delta-G solvation = -3203.482682 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.26200 -37.53269 -36.28272 -34.00974 -33.16876 -32.39467 -31.40383 -28.76159 -26.92748 -26.13176 -25.39047 -23.58412 -22.59731 -21.17480 -20.51397 -19.62875 -18.40266 -16.84204 -16.23735 -16.12020 -15.52208 -14.93604 -14.66817 -14.51625 -14.15981 -13.76325 -13.64848 -13.36034 -13.18773 -12.83332 -12.62846 -12.51317 -12.24047 -11.81955 -11.77656 -11.73800 -11.34135 -11.16908 -10.97225 -10.85252 -10.80282 -10.75102 -10.59237 -10.55703 -10.45727 -9.93016 -9.84896 -9.62251 -9.11544 -8.95342 -8.33716 -8.32790 -7.16185 -5.94715 -3.98241 3.19609 3.28851 3.33097 3.41371 3.48416 4.47595 4.52565 4.70790 4.77098 4.90157 5.04940 5.10132 5.22121 5.32124 5.34722 5.47503 5.48512 5.57734 5.57795 5.65366 5.72228 5.82735 5.89777 5.98474 6.00198 6.03664 6.12110 6.17882 6.18216 6.21633 6.22941 6.28722 6.41893 6.43728 6.85203 6.93645 7.07561 7.16996 7.45763 7.68669 7.80626 7.96449 8.30578 8.41991 8.75533 8.79474 9.11548 9.67089 11.10397 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020208 B = 0.004885 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.248890 B = 5730.370803 C = 6223.821391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.491 4.491 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.663 5.663 14 C 0.076 3.924 15 H 0.103 0.897 16 C -0.185 4.185 17 C 0.518 3.482 18 O -0.519 6.519 19 N -0.614 5.614 20 C 0.119 3.881 21 C -0.135 4.135 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.131 4.131 25 C 0.094 3.906 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.101 0.899 30 H 0.042 0.958 31 H 0.258 0.742 32 H 0.325 0.675 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.541 14.699 5.809 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.114 3.886 4 H 0.023 0.977 5 C -0.530 4.530 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.295 5.295 14 C -0.039 4.039 15 H 0.121 0.879 16 C -0.244 4.244 17 C 0.306 3.694 18 O -0.393 6.393 19 N -0.350 5.350 20 C -0.005 4.005 21 C -0.174 4.174 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.169 4.169 25 C -0.029 4.029 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.119 0.881 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.144 0.856 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.720 14.300 6.420 17.473 hybrid contribution 0.149 0.100 -0.713 0.735 sum -7.570 14.400 5.707 17.241 Atomic orbital electron populations 1.21893 0.99609 0.99556 0.99705 1.21789 0.91223 1.00347 1.03231 1.19203 0.95412 0.89988 0.84033 0.97740 1.21303 0.91269 1.36080 1.04309 0.92004 1.24941 0.98062 0.95654 0.95827 1.69879 1.34593 1.39556 1.09723 0.86516 0.85959 0.77651 0.77760 1.19790 1.21125 1.21271 1.60342 1.38582 0.98851 1.31704 1.21374 0.95994 0.92434 0.94096 0.87906 1.22742 0.97099 1.02102 1.02478 1.21142 0.75695 0.81191 0.91362 1.90625 1.46951 1.65707 1.35987 1.47715 1.73517 1.06054 1.07673 1.21173 0.96453 0.97411 0.85425 1.21111 0.97529 0.99670 0.99056 1.20448 0.99902 0.98850 0.95998 1.21112 0.97540 1.02321 0.94668 1.21770 0.96885 0.97693 1.00550 1.22245 0.99660 0.94690 0.86295 0.94590 0.93880 0.94391 0.88129 0.93941 0.93193 0.85599 0.92539 0.91436 0.91342 0.90058 0.91406 0.91367 0.91694 0.92511 0.92854 0.92145 0.91243 0.91681 0.90765 0.91959 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.82 37.16 0.36 -2.53 16 2 C -0.13 -3.01 5.33 -26.73 -0.14 -3.16 16 3 C 0.22 5.43 1.82 -68.87 -0.13 5.31 16 4 H 0.01 0.13 7.45 -51.93 -0.39 -0.26 16 5 C -0.49 -13.64 8.71 -34.44 -0.30 -13.94 16 6 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.25 11.29 55.43 0.63 -24.62 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.66 -14.63 5.57 -102.17 -0.57 -15.20 16 14 C 0.08 1.41 1.94 -68.86 -0.13 1.27 16 15 H 0.10 2.04 7.15 -51.93 -0.37 1.67 16 16 C -0.19 -2.73 8.68 37.16 0.32 -2.41 16 17 C 0.52 9.52 7.01 -10.99 -0.08 9.44 16 18 O -0.52 -11.50 15.85 5.56 0.09 -11.41 16 19 N -0.61 -8.69 2.25 -172.89 -0.39 -9.08 16 20 C 0.12 1.50 5.37 -4.38 -0.02 1.48 16 21 C -0.13 -1.48 5.72 -28.88 -0.17 -1.65 16 22 C -0.11 -1.05 5.15 -29.79 -0.15 -1.20 16 23 C -0.12 -1.10 5.50 -28.02 -0.15 -1.25 16 24 C -0.13 -1.14 5.71 -27.30 -0.16 -1.30 16 25 C 0.09 1.06 5.26 -2.94 -0.02 1.05 16 26 H 0.04 0.64 6.33 -51.93 -0.33 0.31 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.35 16 30 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.32 6.78 6.01 -39.29 -0.24 6.55 16 33 H 0.06 0.82 8.02 -51.93 -0.42 0.40 16 34 H 0.07 0.82 4.12 -51.93 -0.21 0.61 16 35 H 0.07 1.04 7.84 -51.93 -0.41 0.64 16 36 H 0.08 1.19 7.25 -51.93 -0.38 0.82 16 37 H 0.07 0.71 8.06 -51.93 -0.42 0.30 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.47 7.36 -51.93 -0.38 0.09 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.76 6.25 -51.93 -0.32 0.44 16 44 H 0.06 0.53 7.32 -51.93 -0.38 0.15 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.10 1.14 3.82 -51.93 -0.20 0.94 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -30.74 349.46 -8.95 -39.69 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.10 Total: 6.14 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.85 Total: -7.44 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.33 Total: -48.90 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.74 -8.95 -39.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574337774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.672 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds