Wall clock time and date at job start Tue Mar 31 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 H 1.09001 * 109.46960 * 304.95890 * 3 2 1 5 5 C 1.50696 * 109.47259 * 184.96483 * 3 2 1 6 6 H 1.08005 * 119.99824 * 239.99929 * 5 3 2 7 7 C 1.37876 * 120.00367 * 59.99399 * 5 3 2 8 8 N 1.31514 * 119.99699 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00348 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46861 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47181 * 120.00135 * 9 7 5 12 12 H 1.48498 * 109.47461 * 240.00232 * 9 7 5 13 13 N 1.46892 * 109.47447 * 64.95935 * 3 2 1 14 14 C 1.46907 * 111.00390 * 208.90610 * 13 3 2 15 15 H 1.08997 * 109.46566 * 328.92469 * 14 13 3 16 16 C 1.53000 * 109.46957 * 88.92495 * 14 13 3 17 17 C 1.50702 * 109.47282 * 208.92604 * 14 13 3 18 18 O 1.21280 * 119.99542 * 354.16852 * 17 14 13 19 19 N 1.34769 * 119.99693 * 174.16507 * 17 14 13 20 20 C 1.44585 * 118.64067 * 176.04769 * 19 17 14 21 21 C 1.54305 * 109.91422 * 270.85808 * 20 19 17 22 22 C 1.47091 * 110.29221 * 288.75904 * 21 20 19 23 23 C 1.52564 * 114.32822 * 62.73263 * 22 21 20 24 24 C 1.50877 * 109.35316 * 274.97572 * 23 22 21 25 25 C 1.47596 * 118.64757 * 356.32048 * 19 17 14 26 26 H 1.09001 * 109.47206 * 304.75502 * 1 2 3 27 27 H 1.08999 * 109.47558 * 64.76064 * 1 2 3 28 28 H 1.09007 * 109.47113 * 184.76199 * 1 2 3 29 29 H 1.08996 * 109.47301 * 239.99661 * 2 1 3 30 30 H 1.09001 * 109.47304 * 119.99727 * 2 1 3 31 31 H 0.96999 * 119.99939 * 180.02562 * 8 7 5 32 32 H 1.00898 * 111.00593 * 332.86186 * 13 3 2 33 33 H 1.09000 * 109.46811 * 54.57844 * 16 14 13 34 34 H 1.09002 * 109.46741 * 174.57681 * 16 14 13 35 35 H 1.09003 * 109.47297 * 294.57905 * 16 14 13 36 36 H 1.09002 * 109.44863 * 30.76838 * 20 19 17 37 37 H 1.09004 * 109.44844 * 150.68406 * 20 19 17 38 38 H 1.08995 * 109.40058 * 168.46951 * 21 20 19 39 39 H 1.09002 * 109.28137 * 48.96983 * 21 20 19 40 40 H 1.08999 * 108.51632 * 301.47230 * 22 21 20 41 41 H 1.08997 * 108.38893 * 183.89232 * 22 21 20 42 42 H 1.09002 * 109.49308 * 155.01324 * 23 22 21 43 43 H 1.09000 * 109.49315 * 34.94305 * 23 22 21 44 44 H 1.08993 * 109.37454 * 331.69796 * 24 23 22 45 45 H 1.09006 * 109.36887 * 212.07356 * 24 23 22 46 46 H 1.09004 * 108.94872 * 258.55161 * 25 19 17 47 47 H 1.08998 * 108.95109 * 17.26738 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9813 -0.8423 5 6 3.5419 1.4443 -0.1230 6 1 4.1467 1.8891 0.6535 7 6 4.1440 0.8781 -1.2265 8 7 3.4075 0.3369 -2.1722 9 14 6.0058 0.8798 -1.3786 10 1 6.5988 1.5443 -0.1903 11 1 6.4970 -0.5193 -1.4594 12 1 6.4016 1.6151 -2.6065 13 7 1.6505 2.0996 1.2547 14 6 1.4817 3.5460 1.0613 15 1 2.1624 3.8903 0.2827 16 6 0.0393 3.8398 0.6442 17 6 1.7882 4.2644 2.3501 18 8 2.0116 3.6302 3.3594 19 7 1.8140 5.6115 2.3809 20 6 2.0254 6.2717 3.6498 21 6 0.6708 6.5147 4.3478 22 6 -0.0820 7.5671 3.6483 23 6 -0.4532 7.2232 2.2090 24 6 0.6981 7.5724 1.2986 25 6 1.6194 6.3521 1.1191 26 1 -0.3634 0.5858 0.8443 27 1 -0.3634 0.4382 -0.9295 28 1 -0.3634 -1.0242 0.0853 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8310 -0.0618 -2.9484 32 1 0.8127 1.6855 1.6350 33 1 -0.6451 3.4104 1.3758 34 1 -0.1120 4.9181 0.5942 35 1 -0.1527 3.4002 -0.3347 36 1 2.6488 5.6438 4.2862 37 1 2.5235 7.2269 3.4834 38 1 0.8449 6.8207 5.3794 39 1 0.0916 5.5914 4.3408 40 1 0.5183 8.4768 3.6430 41 1 -0.9987 7.7619 4.2049 42 1 -1.3350 7.7925 1.9149 43 1 -0.6664 6.1570 2.1332 44 1 1.2671 8.3938 1.7340 45 1 0.3106 7.8788 0.3269 46 1 2.5891 6.6912 0.7546 47 1 1.1783 5.6829 0.3804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574337774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:14 Heat of formation + Delta-G solvation = -56.789708 kcal Electronic energy + Delta-G solvation = -24134.439632 eV Core-core repulsion = 20930.142930 eV Total energy + Delta-G solvation = -3204.296702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.50696 -38.79144 -37.91734 -35.36274 -34.59219 -33.65108 -33.05320 -30.34890 -28.12634 -27.89312 -26.32993 -25.09778 -24.21142 -22.34635 -21.52973 -21.26683 -19.62282 -18.41676 -18.03693 -17.41015 -16.74265 -16.56614 -16.06254 -15.80838 -15.47280 -15.13462 -14.99209 -14.53377 -14.50478 -14.17399 -14.02113 -13.68392 -13.54166 -13.22710 -13.20938 -13.03611 -12.91302 -12.77254 -12.55021 -12.36366 -12.26413 -11.99732 -11.80311 -11.67203 -11.52633 -11.51134 -11.38611 -11.25228 -11.04532 -10.50242 -10.41212 -9.51821 -8.93839 -8.06609 -6.18099 1.37821 1.41112 1.52882 1.76559 2.09672 2.43969 3.17578 3.50353 3.69648 3.79981 3.99245 4.05609 4.11492 4.17893 4.21216 4.26291 4.39450 4.51498 4.56600 4.57616 4.64357 4.68825 4.73813 4.81408 4.86187 4.89624 4.99452 5.07670 5.09459 5.16914 5.22552 5.25707 5.30959 5.32946 5.35577 5.40462 5.52290 5.57954 5.74461 5.85278 5.88929 6.31132 6.39757 6.58052 6.94966 6.95506 7.37882 7.51029 8.95857 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020208 B = 0.004885 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.248890 B = 5730.370803 C = 6223.821391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.231 3.769 4 H -0.013 1.013 5 C -0.512 4.512 6 H 0.037 0.963 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.950 3.050 10 H -0.280 1.280 11 H -0.280 1.280 12 H -0.275 1.275 13 N -0.678 5.678 14 C 0.075 3.925 15 H 0.086 0.914 16 C -0.171 4.171 17 C 0.515 3.485 18 O -0.568 6.568 19 N -0.602 5.602 20 C 0.114 3.886 21 C -0.126 4.126 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.122 4.122 25 C 0.085 3.915 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.330 0.670 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 16.950 5.521 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.124 3.876 4 H 0.005 0.995 5 C -0.551 4.551 6 H 0.055 0.945 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.206 1.206 12 H -0.200 1.200 13 N -0.311 5.311 14 C -0.039 4.039 15 H 0.104 0.896 16 C -0.230 4.230 17 C 0.303 3.697 18 O -0.446 6.446 19 N -0.336 5.336 20 C -0.009 4.009 21 C -0.165 4.165 22 C -0.151 4.151 23 C -0.158 4.158 24 C -0.160 4.160 25 C -0.037 4.037 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.150 0.850 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.113 0.887 46 H 0.087 0.913 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.700 16.605 6.114 19.718 hybrid contribution 0.478 -0.543 -0.603 0.942 sum -8.223 16.062 5.510 18.867 Atomic orbital electron populations 1.21746 0.96028 1.01239 1.00519 1.21628 0.94450 0.99113 1.01040 1.18930 0.93675 0.90587 0.84437 0.99518 1.21458 0.92997 1.36599 1.04046 0.94484 1.25558 1.01887 0.95232 0.95491 1.69973 1.35969 1.39585 1.09922 0.85635 0.81312 0.77757 0.77657 1.20496 1.20577 1.20017 1.60186 1.39390 1.00917 1.30573 1.21373 0.98093 0.90428 0.94006 0.89601 1.22600 0.94175 1.04149 1.02044 1.21100 0.75538 0.82626 0.90458 1.90597 1.49608 1.67133 1.37282 1.47738 1.71602 1.04838 1.09390 1.21352 0.97506 0.97719 0.84361 1.21044 0.96161 0.99196 1.00074 1.20442 1.00301 0.98510 0.95884 1.21140 0.98494 1.01312 0.94853 1.21758 0.96133 0.96288 1.01810 1.22507 1.00953 0.95560 0.84660 0.93035 0.93596 0.92398 0.90925 0.95356 0.92928 0.85026 0.92156 0.88497 0.91707 0.92843 0.88548 0.89971 0.94490 0.90746 0.91889 0.90263 0.93308 0.90250 0.88661 0.91315 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 9.82 71.98 0.71 -4.50 16 2 C -0.12 -5.97 5.33 30.59 0.16 -5.81 16 3 C 0.23 11.74 1.82 44.17 0.08 11.82 16 4 H -0.01 -0.68 7.45 -2.39 -0.02 -0.70 16 5 C -0.51 -29.44 8.71 25.60 0.22 -29.21 16 6 H 0.04 2.26 7.81 -2.91 -0.02 2.24 16 7 C 0.02 0.95 5.29 84.65 0.45 1.39 16 8 N -0.91 -52.10 11.29 21.45 0.24 -51.85 16 9 Si 0.95 45.10 29.54 68.60 2.03 47.12 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.68 -30.86 5.57 -477.17 -2.66 -33.52 16 14 C 0.08 2.85 1.94 44.17 0.09 2.94 16 15 H 0.09 3.52 7.15 -2.39 -0.02 3.51 16 16 C -0.17 -4.93 8.68 71.98 0.62 -4.30 16 17 C 0.51 19.36 7.01 87.66 0.61 19.97 16 18 O -0.57 -26.24 15.85 -3.03 -0.05 -26.29 16 19 N -0.60 -16.74 2.25 -819.29 -1.84 -18.59 16 20 C 0.11 2.77 5.37 87.18 0.47 3.24 16 21 C -0.13 -2.59 5.72 29.20 0.17 -2.43 16 22 C -0.11 -1.73 5.15 28.61 0.15 -1.58 16 23 C -0.12 -1.83 5.50 29.76 0.16 -1.67 16 24 C -0.12 -1.68 5.71 30.23 0.17 -1.51 16 25 C 0.08 1.76 5.26 86.49 0.46 2.22 16 26 H 0.05 1.77 6.33 -2.39 -0.02 1.76 16 27 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.07 3.92 5.95 -2.39 -0.01 3.91 16 30 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.33 14.03 6.01 -89.70 -0.54 13.49 16 33 H 0.06 1.70 8.02 -2.39 -0.02 1.68 16 34 H 0.10 2.19 4.12 -2.39 -0.01 2.18 16 35 H 0.06 1.92 7.84 -2.39 -0.02 1.91 16 36 H 0.05 1.61 7.25 -2.39 -0.02 1.59 16 37 H 0.10 1.79 8.06 -2.39 -0.02 1.77 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 0.91 7.36 -2.39 -0.02 0.89 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.05 0.96 6.25 -2.39 -0.01 0.94 16 44 H 0.08 0.92 7.32 -2.39 -0.02 0.91 16 45 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 47 H 0.09 2.01 3.82 -2.39 -0.01 2.00 16 Total: -1.00 -69.12 349.46 2.65 -66.47 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.41 Total: 26.08 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 4.52 Total: -9.42 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -4.26 Total: -103.96 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.05 Total: -26.29 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.12 2.65 -66.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574337774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.682 kcal (2) G-P(sol) polarization free energy of solvation -69.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds