Wall clock time and date at job start Tue Mar 31 2020 06:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47109 * 2 1 4 4 H 1.09008 * 109.47317 * 54.88589 * 3 2 1 5 5 C 1.50699 * 109.47516 * 174.88282 * 3 2 1 6 6 H 1.08000 * 119.99452 * 119.71941 * 5 3 2 7 7 C 1.37872 * 120.00050 * 300.00237 * 5 3 2 8 8 N 1.31520 * 120.00184 * 179.71803 * 7 5 3 9 9 Si 1.86800 * 119.99995 * 359.71870 * 7 5 3 10 10 H 1.48508 * 109.46900 * 90.00459 * 9 7 5 11 11 H 1.48504 * 109.47220 * 210.00003 * 9 7 5 12 12 H 1.48496 * 109.47278 * 330.00633 * 9 7 5 13 13 N 1.46906 * 109.46884 * 294.88642 * 3 2 1 14 14 C 1.46901 * 110.99586 * 151.09460 * 13 3 2 15 15 H 1.08999 * 109.47601 * 328.59137 * 14 13 3 16 16 C 1.52996 * 109.47191 * 88.59842 * 14 13 3 17 17 C 1.50704 * 109.46521 * 208.59437 * 14 13 3 18 18 O 1.21276 * 120.00130 * 346.96969 * 17 14 13 19 19 N 1.34780 * 119.99651 * 166.96693 * 17 14 13 20 20 C 1.44579 * 118.64123 * 184.93595 * 19 17 14 21 21 C 1.54306 * 109.91024 * 270.85582 * 20 19 17 22 22 C 1.47098 * 110.29403 * 288.76071 * 21 20 19 23 23 C 1.52563 * 114.32787 * 62.72796 * 22 21 20 24 24 C 1.50880 * 109.35514 * 274.98381 * 23 22 21 25 25 C 1.47604 * 118.64509 * 5.20293 * 19 17 14 26 26 H 1.09003 * 109.46963 * 185.06318 * 1 2 3 27 27 H 1.09001 * 109.47373 * 305.06708 * 1 2 3 28 28 H 1.09003 * 109.47107 * 65.06979 * 1 2 3 29 29 H 1.08997 * 109.47505 * 239.99833 * 2 1 3 30 30 H 1.09004 * 109.46836 * 119.99465 * 2 1 3 31 31 H 0.96992 * 119.99658 * 179.97438 * 8 7 5 32 32 H 1.00895 * 110.99659 * 275.04111 * 13 3 2 33 33 H 1.09004 * 109.47078 * 51.38557 * 16 14 13 34 34 H 1.09000 * 109.46912 * 171.38030 * 16 14 13 35 35 H 1.08998 * 109.47093 * 291.38252 * 16 14 13 36 36 H 1.09007 * 109.44991 * 30.76188 * 20 19 17 37 37 H 1.08999 * 109.44964 * 150.68095 * 20 19 17 38 38 H 1.09003 * 109.40514 * 168.47166 * 21 20 19 39 39 H 1.08998 * 109.14533 * 48.88456 * 21 20 19 40 40 H 1.09002 * 108.51049 * 301.47663 * 22 21 20 41 41 H 1.08994 * 108.39128 * 183.89675 * 22 21 20 42 42 H 1.09000 * 109.48819 * 155.01831 * 23 22 21 43 43 H 1.09004 * 109.48924 * 34.94962 * 23 22 21 44 44 H 1.08996 * 109.36636 * 331.69195 * 24 23 22 45 45 H 1.09002 * 109.36706 * 212.07873 * 24 23 22 46 46 H 1.09002 * 108.94342 * 258.55138 * 25 19 17 47 47 H 1.08994 * 108.94794 * 17.26653 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9822 0.8407 5 6 3.5417 1.4445 0.1267 6 1 4.1485 1.8845 -0.6508 7 6 4.1409 0.8794 1.2323 8 7 5.4517 0.8761 1.3403 9 14 3.0912 0.1182 2.5770 10 1 2.8644 -1.3180 2.2746 11 1 3.7893 0.2450 3.8815 12 1 1.7854 0.8222 2.6438 13 7 1.6537 2.0984 -1.2565 14 6 1.4844 3.5450 -1.0646 15 1 1.1342 3.7386 -0.0508 16 6 2.8249 4.2489 -1.2845 17 6 0.4743 4.0678 -2.0534 18 8 0.1242 3.3760 -2.9859 19 7 -0.0399 5.3043 -1.9012 20 6 -1.0850 5.7359 -2.8022 21 6 -0.4633 6.4016 -4.0477 22 6 0.1094 7.7098 -3.6947 23 6 1.2542 7.6437 -2.6884 24 6 0.6895 7.6184 -1.2895 25 6 0.4912 6.1641 -0.8254 26 1 -0.3633 -1.0237 0.0907 27 1 -0.3634 0.5904 0.8411 28 1 -0.3633 0.4332 -0.9319 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8732 0.4789 2.1183 32 1 2.3242 1.9064 -1.9855 33 1 3.2486 3.9339 -2.2381 34 1 2.6713 5.3280 -1.2939 35 1 3.5096 3.9864 -0.4781 36 1 -1.6748 4.8737 -3.1136 37 1 -1.7304 6.4518 -2.2931 38 1 -1.2328 6.5379 -4.8076 39 1 0.3231 5.7581 -4.4419 40 1 -0.6819 8.3330 -3.2782 41 1 0.4765 8.1817 -4.6060 42 1 1.8934 8.5187 -2.8068 43 1 1.8386 6.7399 -2.8611 44 1 -0.2698 8.1357 -1.2776 45 1 1.3786 8.1232 -0.6123 46 1 -0.2048 6.1521 0.0134 47 1 1.4503 5.7655 -0.4948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574337775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:18 Heat of formation + Delta-G solvation = -35.960184 kcal Electronic energy + Delta-G solvation = -24163.118897 eV Core-core repulsion = 20959.725431 eV Total energy + Delta-G solvation = -3203.393466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.30665 -37.61148 -36.38101 -34.05864 -33.19710 -32.39818 -31.86298 -28.89416 -26.95255 -26.56312 -25.39699 -23.38129 -22.42785 -21.29303 -20.52610 -19.95035 -18.51143 -17.10185 -16.64036 -16.24857 -15.52116 -15.16183 -14.77267 -14.45182 -14.14735 -13.83830 -13.52433 -13.35281 -13.12289 -13.04338 -12.69542 -12.43615 -12.35957 -12.16872 -11.72366 -11.63982 -11.50530 -11.36240 -11.15286 -10.90558 -10.81073 -10.76982 -10.71333 -10.52448 -10.45829 -10.38339 -9.80108 -9.42515 -9.29735 -9.03775 -8.57282 -8.43100 -7.35306 -6.14708 -4.15680 3.08018 3.20998 3.25522 3.35779 3.37655 4.35497 4.50792 4.68431 4.75432 4.85388 5.02195 5.06518 5.14582 5.23528 5.32122 5.44992 5.51183 5.54793 5.58488 5.67876 5.72404 5.79779 5.86634 5.98012 5.99579 6.02435 6.09451 6.10292 6.13881 6.19952 6.28705 6.32785 6.37378 6.70258 6.75839 6.76431 6.86789 7.02106 7.11168 7.28177 7.53509 7.57741 8.01278 8.36431 8.47441 8.65607 8.88069 9.48911 10.97596 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024325 B = 0.004832 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.787922 B = 5793.359207 C = 6320.143663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.185 3.815 4 H 0.030 0.970 5 C -0.545 4.545 6 H 0.077 0.923 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.659 5.659 14 C 0.079 3.921 15 H 0.090 0.910 16 C -0.180 4.180 17 C 0.517 3.483 18 O -0.523 6.523 19 N -0.613 5.613 20 C 0.121 3.879 21 C -0.136 4.136 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.130 4.130 25 C 0.092 3.908 26 H 0.032 0.968 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.344 0.656 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.790 14.112 -4.805 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.076 3.924 4 H 0.048 0.952 5 C -0.583 4.583 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.190 1.190 13 N -0.289 5.289 14 C -0.035 4.035 15 H 0.108 0.892 16 C -0.239 4.239 17 C 0.305 3.695 18 O -0.397 6.397 19 N -0.349 5.349 20 C -0.002 4.002 21 C -0.174 4.174 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.168 4.168 25 C -0.030 4.030 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.079 0.921 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.520 13.532 -5.121 18.495 hybrid contribution 0.560 -0.095 0.953 1.110 sum -10.960 13.438 -4.168 17.834 Atomic orbital electron populations 1.21726 0.97585 0.99099 1.01599 1.21808 0.93852 0.99243 1.00381 1.19687 0.94505 0.90782 0.87382 0.95193 1.21774 0.90308 1.39229 1.06999 0.90484 1.24991 0.94715 0.95177 0.97977 1.69912 1.08861 1.45012 1.29663 0.86851 0.80571 0.80041 0.80724 1.20460 1.22694 1.19014 1.60403 1.53566 1.05120 1.09777 1.21354 0.93409 0.91474 0.97303 0.89182 1.22690 0.97772 0.99333 1.04056 1.21210 0.81821 0.80210 0.86276 1.90622 1.59936 1.56965 1.32186 1.47737 1.38847 1.14779 1.33522 1.21176 0.89660 0.99413 0.89996 1.21109 1.01153 0.97036 0.98126 1.20450 0.97955 0.97677 0.99126 1.21085 0.97909 1.02278 0.94308 1.21752 1.01566 0.95974 0.97509 1.22268 1.00812 0.90830 0.89084 0.94924 0.94365 0.91833 0.92254 0.93762 0.92646 0.83732 0.92433 0.92617 0.89154 0.90319 0.91409 0.91409 0.91452 0.92571 0.92798 0.92067 0.91295 0.91741 0.90675 0.92126 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.74 37.16 0.36 -2.41 16 2 C -0.11 -2.54 5.11 -26.73 -0.14 -2.68 16 3 C 0.19 4.22 1.58 -68.86 -0.11 4.11 16 4 H 0.03 0.71 6.36 -51.92 -0.33 0.38 16 5 C -0.54 -14.27 7.91 -34.44 -0.27 -14.54 16 6 H 0.08 2.17 7.28 -52.49 -0.38 1.79 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -26.43 13.96 55.43 0.77 -25.66 16 9 Si 0.89 21.52 24.42 -169.99 -4.15 17.37 16 10 H -0.28 -6.68 6.82 56.52 0.39 -6.29 16 11 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.27 -6.17 6.53 56.52 0.37 -5.80 16 13 N -0.66 -13.57 5.13 -102.16 -0.52 -14.10 16 14 C 0.08 1.39 2.16 -68.86 -0.15 1.24 16 15 H 0.09 1.57 6.75 -51.93 -0.35 1.22 16 16 C -0.18 -2.95 8.16 37.16 0.30 -2.65 16 17 C 0.52 8.79 6.95 -10.98 -0.08 8.71 16 18 O -0.52 -10.65 15.97 5.56 0.09 -10.56 16 19 N -0.61 -8.10 2.25 -172.90 -0.39 -8.49 16 20 C 0.12 1.42 5.30 -4.38 -0.02 1.40 16 21 C -0.14 -1.46 5.72 -28.88 -0.17 -1.62 16 22 C -0.11 -1.05 5.15 -29.79 -0.15 -1.20 16 23 C -0.12 -1.12 5.51 -28.02 -0.15 -1.27 16 24 C -0.13 -1.12 5.71 -27.30 -0.16 -1.27 16 25 C 0.09 0.99 5.33 -2.95 -0.02 0.98 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.25 7.90 -51.93 -0.41 0.84 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.04 1.03 3.23 -51.93 -0.17 0.86 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.34 7.39 7.88 -39.29 -0.31 7.08 16 33 H 0.06 0.98 7.95 -51.93 -0.41 0.57 16 34 H 0.06 0.75 5.07 -51.93 -0.26 0.49 16 35 H 0.09 1.71 6.82 -51.93 -0.35 1.35 16 36 H 0.08 1.06 7.38 -51.93 -0.38 0.68 16 37 H 0.07 0.65 8.06 -51.93 -0.42 0.24 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.46 7.36 -51.93 -0.38 0.07 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.80 6.98 -51.93 -0.36 0.43 16 44 H 0.06 0.50 7.32 -51.93 -0.38 0.12 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.10 1.13 3.81 -51.93 -0.20 0.93 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -30.00 343.71 -7.96 -37.96 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -8.09 Total: 7.54 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -0.84 Total: -9.24 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.14 Total: -48.25 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.15 Total: 17.37 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.00 -7.96 -37.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574337775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.003 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds