Wall clock time and date at job start Tue Mar 31 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47109 * 2 1 4 4 H 1.09008 * 109.47317 * 54.88589 * 3 2 1 5 5 C 1.50699 * 109.47516 * 174.88282 * 3 2 1 6 6 H 1.08000 * 119.99452 * 119.71941 * 5 3 2 7 7 C 1.37872 * 120.00050 * 300.00237 * 5 3 2 8 8 N 1.31520 * 120.00184 * 179.71803 * 7 5 3 9 9 Si 1.86800 * 119.99995 * 359.71870 * 7 5 3 10 10 H 1.48508 * 109.46900 * 90.00459 * 9 7 5 11 11 H 1.48504 * 109.47220 * 210.00003 * 9 7 5 12 12 H 1.48496 * 109.47278 * 330.00633 * 9 7 5 13 13 N 1.46906 * 109.46884 * 294.88642 * 3 2 1 14 14 C 1.46901 * 110.99586 * 151.09460 * 13 3 2 15 15 H 1.08999 * 109.47601 * 328.59137 * 14 13 3 16 16 C 1.52996 * 109.47191 * 88.59842 * 14 13 3 17 17 C 1.50704 * 109.46521 * 208.59437 * 14 13 3 18 18 O 1.21276 * 120.00130 * 346.96969 * 17 14 13 19 19 N 1.34780 * 119.99651 * 166.96693 * 17 14 13 20 20 C 1.44579 * 118.64123 * 184.93595 * 19 17 14 21 21 C 1.54306 * 109.91024 * 270.85582 * 20 19 17 22 22 C 1.47098 * 110.29403 * 288.76071 * 21 20 19 23 23 C 1.52563 * 114.32787 * 62.72796 * 22 21 20 24 24 C 1.50880 * 109.35514 * 274.98381 * 23 22 21 25 25 C 1.47604 * 118.64509 * 5.20293 * 19 17 14 26 26 H 1.09003 * 109.46963 * 185.06318 * 1 2 3 27 27 H 1.09001 * 109.47373 * 305.06708 * 1 2 3 28 28 H 1.09003 * 109.47107 * 65.06979 * 1 2 3 29 29 H 1.08997 * 109.47505 * 239.99833 * 2 1 3 30 30 H 1.09004 * 109.46836 * 119.99465 * 2 1 3 31 31 H 0.96992 * 119.99658 * 179.97438 * 8 7 5 32 32 H 1.00895 * 110.99659 * 275.04111 * 13 3 2 33 33 H 1.09004 * 109.47078 * 51.38557 * 16 14 13 34 34 H 1.09000 * 109.46912 * 171.38030 * 16 14 13 35 35 H 1.08998 * 109.47093 * 291.38252 * 16 14 13 36 36 H 1.09007 * 109.44991 * 30.76188 * 20 19 17 37 37 H 1.08999 * 109.44964 * 150.68095 * 20 19 17 38 38 H 1.09003 * 109.40514 * 168.47166 * 21 20 19 39 39 H 1.08998 * 109.14533 * 48.88456 * 21 20 19 40 40 H 1.09002 * 108.51049 * 301.47663 * 22 21 20 41 41 H 1.08994 * 108.39128 * 183.89675 * 22 21 20 42 42 H 1.09000 * 109.48819 * 155.01831 * 23 22 21 43 43 H 1.09004 * 109.48924 * 34.94962 * 23 22 21 44 44 H 1.08996 * 109.36636 * 331.69195 * 24 23 22 45 45 H 1.09002 * 109.36706 * 212.07873 * 24 23 22 46 46 H 1.09002 * 108.94342 * 258.55138 * 25 19 17 47 47 H 1.08994 * 108.94794 * 17.26653 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9822 0.8407 5 6 3.5417 1.4445 0.1267 6 1 4.1485 1.8845 -0.6508 7 6 4.1409 0.8794 1.2323 8 7 5.4517 0.8761 1.3403 9 14 3.0912 0.1182 2.5770 10 1 2.8644 -1.3180 2.2746 11 1 3.7893 0.2450 3.8815 12 1 1.7854 0.8222 2.6438 13 7 1.6537 2.0984 -1.2565 14 6 1.4844 3.5450 -1.0646 15 1 1.1342 3.7386 -0.0508 16 6 2.8249 4.2489 -1.2845 17 6 0.4743 4.0678 -2.0534 18 8 0.1242 3.3760 -2.9859 19 7 -0.0399 5.3043 -1.9012 20 6 -1.0850 5.7359 -2.8022 21 6 -0.4633 6.4016 -4.0477 22 6 0.1094 7.7098 -3.6947 23 6 1.2542 7.6437 -2.6884 24 6 0.6895 7.6184 -1.2895 25 6 0.4912 6.1641 -0.8254 26 1 -0.3633 -1.0237 0.0907 27 1 -0.3634 0.5904 0.8411 28 1 -0.3633 0.4332 -0.9319 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8732 0.4789 2.1183 32 1 2.3242 1.9064 -1.9855 33 1 3.2486 3.9339 -2.2381 34 1 2.6713 5.3280 -1.2939 35 1 3.5096 3.9864 -0.4781 36 1 -1.6748 4.8737 -3.1136 37 1 -1.7304 6.4518 -2.2931 38 1 -1.2328 6.5379 -4.8076 39 1 0.3231 5.7581 -4.4419 40 1 -0.6819 8.3330 -3.2782 41 1 0.4765 8.1817 -4.6060 42 1 1.8934 8.5187 -2.8068 43 1 1.8386 6.7399 -2.8611 44 1 -0.2698 8.1357 -1.2776 45 1 1.3786 8.1232 -0.6123 46 1 -0.2048 6.1521 0.0134 47 1 1.4503 5.7655 -0.4948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574337775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:17 Heat of formation + Delta-G solvation = -55.216111 kcal Electronic energy + Delta-G solvation = -24163.953896 eV Core-core repulsion = 20959.725431 eV Total energy + Delta-G solvation = -3204.228465 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48871 -38.83665 -37.93556 -35.33497 -34.55357 -33.89557 -33.29343 -30.45354 -28.41926 -27.95433 -26.30583 -24.74562 -24.15606 -22.41284 -21.75300 -21.27578 -19.70259 -18.92057 -18.08355 -17.39782 -17.01861 -16.52138 -15.95446 -15.71579 -15.38510 -15.15246 -14.89125 -14.68164 -14.55620 -14.22573 -14.15695 -13.91367 -13.56415 -13.45470 -13.26986 -13.17668 -12.90031 -12.68114 -12.53302 -12.36583 -12.22703 -12.16321 -11.79727 -11.64443 -11.55035 -11.40393 -11.27213 -11.25380 -11.17735 -10.75170 -10.41978 -9.52114 -9.06003 -8.28528 -6.32595 1.33262 1.37204 1.47293 1.74331 2.08773 2.32883 3.06353 3.44543 3.67464 3.80188 3.98903 4.05874 4.08977 4.17809 4.22685 4.25464 4.39153 4.39533 4.45280 4.56441 4.64029 4.68385 4.73016 4.78780 4.87111 4.90498 4.97193 5.01747 5.09709 5.11253 5.23162 5.26006 5.28926 5.31097 5.35044 5.40372 5.43368 5.48757 5.51093 5.61500 5.83801 6.09924 6.36598 6.45542 6.62842 6.79192 7.35347 7.36127 8.86779 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024325 B = 0.004832 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.787922 B = 5793.359207 C = 6320.143663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 C 0.193 3.807 4 H 0.031 0.969 5 C -0.535 4.535 6 H 0.045 0.955 7 C 0.021 3.979 8 N -0.944 5.944 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.301 1.301 12 H -0.246 1.246 13 N -0.660 5.660 14 C 0.078 3.922 15 H 0.097 0.903 16 C -0.165 4.165 17 C 0.518 3.482 18 O -0.565 6.565 19 N -0.602 5.602 20 C 0.117 3.883 21 C -0.129 4.129 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.123 4.123 25 C 0.084 3.916 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.335 0.665 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.262 15.984 -3.929 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.084 3.916 4 H 0.049 0.951 5 C -0.574 4.574 6 H 0.063 0.937 7 C -0.177 4.177 8 N -0.584 5.584 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.229 1.229 12 H -0.169 1.169 13 N -0.288 5.288 14 C -0.036 4.036 15 H 0.115 0.885 16 C -0.224 4.224 17 C 0.306 3.694 18 O -0.442 6.442 19 N -0.335 5.335 20 C -0.006 4.006 21 C -0.168 4.168 22 C -0.151 4.151 23 C -0.158 4.158 24 C -0.161 4.161 25 C -0.037 4.037 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.153 0.847 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.024 15.458 -4.240 21.298 hybrid contribution 1.352 -0.579 0.594 1.586 sum -12.672 14.879 -3.646 19.881 Atomic orbital electron populations 1.21612 0.95039 1.00711 1.01618 1.21779 0.96114 0.98109 0.99583 1.19547 0.91956 0.91803 0.88320 0.95113 1.22002 0.92143 1.37597 1.05675 0.93724 1.25739 0.95609 0.95969 1.00399 1.70047 1.10737 1.46938 1.30681 0.85945 0.79735 0.79544 0.77739 1.19919 1.22866 1.16940 1.60408 1.52797 1.07199 1.08443 1.21422 0.94243 0.89903 0.98081 0.88491 1.22507 0.96473 1.01342 1.02072 1.20971 0.81634 0.81325 0.85507 1.90605 1.61446 1.58536 1.33645 1.47749 1.38268 1.13692 1.33836 1.21349 0.89356 0.99381 0.90481 1.21058 1.00564 0.97229 0.97919 1.20440 0.98383 0.96763 0.99508 1.21110 0.98030 1.01547 0.95128 1.21747 1.02968 0.94315 0.97037 1.22501 1.00620 0.91744 0.88822 0.92656 0.93634 0.92363 0.93111 0.94543 0.92691 0.84713 0.93754 0.89402 0.91894 0.92383 0.88199 0.89920 0.94816 0.90429 0.92304 0.90738 0.94023 0.89866 0.89008 0.90312 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 9.74 71.98 0.70 -4.13 16 2 C -0.12 -5.10 5.11 30.59 0.16 -4.94 16 3 C 0.19 8.78 1.58 44.17 0.07 8.85 16 4 H 0.03 1.41 6.36 -2.38 -0.02 1.40 16 5 C -0.54 -28.76 7.91 25.60 0.20 -28.56 16 6 H 0.04 2.64 7.28 -2.91 -0.02 2.62 16 7 C 0.02 1.19 5.45 84.65 0.46 1.65 16 8 N -0.94 -57.19 13.96 21.45 0.30 -56.89 16 9 Si 0.94 44.01 24.42 68.60 1.68 45.68 16 10 H -0.27 -12.45 6.82 99.48 0.68 -11.78 16 11 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 12 H -0.25 -10.59 6.53 99.48 0.65 -9.94 16 13 N -0.66 -27.57 5.13 -477.14 -2.45 -30.02 16 14 C 0.08 2.74 2.16 44.17 0.10 2.83 16 15 H 0.10 3.28 6.75 -2.39 -0.02 3.26 16 16 C -0.17 -5.55 8.16 71.98 0.59 -4.96 16 17 C 0.52 17.52 6.95 87.66 0.61 18.13 16 18 O -0.56 -23.39 15.97 -3.02 -0.05 -23.44 16 19 N -0.60 -14.97 2.25 -819.31 -1.84 -16.82 16 20 C 0.12 2.53 5.30 87.18 0.46 2.99 16 21 C -0.13 -2.58 5.72 29.20 0.17 -2.41 16 22 C -0.11 -1.75 5.15 28.61 0.15 -1.60 16 23 C -0.12 -1.97 5.51 29.76 0.16 -1.80 16 24 C -0.12 -1.65 5.71 30.22 0.17 -1.48 16 25 C 0.08 1.58 5.33 86.49 0.46 2.04 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 2.19 7.90 -2.39 -0.02 2.17 16 29 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.04 1.63 3.23 -2.39 -0.01 1.63 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.34 14.99 7.88 -89.70 -0.71 14.29 16 33 H 0.04 1.58 7.95 -2.39 -0.02 1.56 16 34 H 0.09 2.33 5.07 -2.39 -0.01 2.32 16 35 H 0.06 2.46 6.82 -2.39 -0.02 2.45 16 36 H 0.06 1.52 7.38 -2.38 -0.02 1.50 16 37 H 0.10 1.54 8.06 -2.39 -0.02 1.52 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 39 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.91 7.36 -2.39 -0.02 0.89 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 43 H 0.04 0.91 6.98 -2.39 -0.02 0.90 16 44 H 0.08 0.87 7.32 -2.39 -0.02 0.85 16 45 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.09 1.83 3.81 -2.39 -0.01 1.83 16 Total: -1.00 -66.80 343.71 2.25 -64.55 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.16 Total: 30.35 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 4.46 Total: -13.41 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -3.99 Total: -103.73 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.05 Total: -23.44 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.68 Total: 45.68 kcal Total: -66.80 2.25 -64.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574337775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.333 kcal (2) G-P(sol) polarization free energy of solvation -66.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds