Wall clock time and date at job start Tue Mar 31 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46999 * 2 1 4 4 H 1.08996 * 109.47484 * 304.86300 * 3 2 1 5 5 C 1.50702 * 109.46916 * 184.86007 * 3 2 1 6 6 O 1.21283 * 120.00120 * 262.52860 * 5 3 2 7 7 N 1.34774 * 119.99755 * 82.79968 * 5 3 2 8 8 C 1.46921 * 120.63289 * 359.72526 * 7 5 3 9 9 C 1.52761 * 109.00799 * 233.58202 * 8 7 5 10 10 C 1.53043 * 109.38231 * 305.58644 * 9 8 7 11 11 C 1.52997 * 109.46208 * 181.26331 * 10 9 8 12 12 C 1.50703 * 109.47104 * 64.92672 * 11 10 9 13 13 H 1.08002 * 120.00021 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99669 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00414 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99645 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47259 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47500 * 120.00007 * 16 14 12 19 19 H 1.48509 * 109.46950 * 239.99540 * 16 14 12 20 20 C 1.53034 * 109.53750 * 61.24099 * 10 9 8 21 21 C 1.46932 * 120.62963 * 179.97438 * 7 5 3 22 22 N 1.46897 * 109.46843 * 64.86550 * 3 2 1 23 23 C 1.46903 * 110.99694 * 275.38733 * 22 3 2 24 24 C 1.46900 * 111.00570 * 39.34119 * 22 3 2 25 25 H 1.09002 * 109.46956 * 42.02321 * 1 2 3 26 26 H 1.09005 * 109.47268 * 162.01617 * 1 2 3 27 27 H 1.08990 * 109.47307 * 282.02286 * 1 2 3 28 28 H 1.08998 * 109.46830 * 239.99820 * 2 1 3 29 29 H 1.08996 * 109.46499 * 120.00167 * 2 1 3 30 30 H 1.09005 * 109.58713 * 353.41540 * 8 7 5 31 31 H 1.09000 * 109.58958 * 113.84109 * 8 7 5 32 32 H 1.09004 * 109.56633 * 185.55252 * 9 8 7 33 33 H 1.08999 * 109.36167 * 65.49782 * 9 8 7 34 34 H 1.09005 * 109.45832 * 301.22365 * 10 9 8 35 35 H 1.08991 * 109.47674 * 184.93108 * 11 10 9 36 36 H 1.09007 * 109.46683 * 304.93230 * 11 10 9 37 37 H 0.97000 * 120.00588 * 179.97438 * 15 14 12 38 38 H 1.09007 * 109.49921 * 178.68388 * 20 10 9 39 39 H 1.08996 * 109.52729 * 58.60167 * 20 10 9 40 40 H 1.08996 * 109.58514 * 246.16247 * 21 7 5 41 41 H 1.09000 * 109.58419 * 6.44202 * 21 7 5 42 42 H 1.08998 * 109.47357 * 67.72751 * 23 22 3 43 43 H 1.09001 * 109.46788 * 187.72129 * 23 22 3 44 44 H 1.08997 * 109.47081 * 307.71787 * 23 22 3 45 45 H 1.09002 * 109.46796 * 51.54850 * 24 22 3 46 46 H 1.09001 * 109.47549 * 171.55195 * 24 22 3 47 47 H 1.09003 * 109.46729 * 291.55017 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6074 1.9809 -0.8432 5 6 3.5422 1.4442 -0.1204 6 8 4.2301 1.5520 0.8727 7 7 4.1212 1.3314 -1.3322 8 6 3.3014 1.2000 -2.5443 9 6 3.7506 -0.0389 -3.3169 10 6 5.2555 0.0456 -3.5817 11 6 5.7017 -1.1792 -4.3827 12 6 5.0538 -1.1530 -5.7431 13 1 4.3904 -0.3435 -6.0098 14 6 5.3079 -2.1625 -6.6472 15 7 6.1160 -3.1479 -6.3227 16 14 4.5053 -2.1296 -8.3337 17 1 3.6469 -0.9234 -8.4500 18 1 5.5567 -2.0925 -9.3817 19 1 3.6737 -3.3473 -8.5099 20 6 6.0081 0.0855 -2.2498 21 6 5.5845 1.3320 -1.4657 22 7 1.6486 2.1002 1.2538 23 6 0.2852 2.6395 1.1620 24 6 1.7755 1.1809 2.3926 25 1 -0.3633 0.7634 -0.6880 26 1 -0.3634 -0.9775 -0.3173 27 1 -0.3633 0.2140 1.0050 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2526 1.0954 -2.2665 31 1 3.4295 2.0835 -3.1696 32 1 3.2166 -0.0909 -4.2657 33 1 3.5343 -0.9302 -2.7279 34 1 5.4741 0.9500 -4.1495 35 1 6.7856 -1.1640 -4.4962 36 1 5.4041 -2.0859 -3.8560 37 1 6.2945 -3.8583 -6.9586 38 1 7.0810 0.1221 -2.4390 39 1 5.7711 -0.8069 -1.6705 40 1 5.9021 2.2265 -2.0014 41 1 6.0416 1.3170 -0.4763 42 1 -0.4272 1.8171 1.0975 43 1 0.0706 3.2373 2.0478 44 1 0.2008 3.2642 0.2729 45 1 2.7702 0.7351 2.3905 46 1 1.6255 1.7305 3.3218 47 1 1.0248 0.3948 2.3102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575408294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:49 Heat of formation + Delta-G solvation = -37.632997 kcal Electronic energy + Delta-G solvation = -23725.863721 eV Core-core repulsion = 20522.397716 eV Total energy + Delta-G solvation = -3203.466004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50470 -38.29843 -36.87749 -34.04236 -32.61371 -31.99377 -30.83905 -28.76127 -27.94993 -27.53371 -24.61810 -23.15928 -22.84590 -22.16676 -20.95086 -19.67509 -18.41869 -17.29116 -16.47415 -16.30634 -15.58183 -15.35694 -14.69514 -14.60466 -14.45849 -13.95551 -13.69771 -13.37763 -13.07027 -12.99765 -12.79040 -12.60143 -12.32950 -12.24688 -12.07687 -11.85684 -11.74510 -11.65240 -11.37755 -11.20719 -11.02246 -10.98587 -10.79195 -10.71440 -10.46039 -10.11326 -9.71876 -9.45756 -9.25809 -8.97492 -8.38324 -8.34291 -8.26344 -6.02250 -4.04366 2.77982 3.07878 3.27927 3.36162 3.38663 3.94009 4.42944 4.49348 4.65261 4.74365 5.02115 5.05817 5.13114 5.16865 5.22778 5.32877 5.38641 5.41542 5.47994 5.48977 5.50762 5.56719 5.65970 5.69881 5.75344 5.76292 5.85628 5.93991 6.00533 6.03276 6.11350 6.38208 6.38873 6.50857 6.67291 6.82713 6.91044 6.95829 6.98740 7.09358 7.63812 7.65481 7.79584 7.97586 8.39764 8.40110 9.02471 9.59654 11.09019 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024678 B = 0.003945 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.333484 B = 7096.735285 C = 7716.665283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.155 4.155 3 C 0.066 3.934 4 H 0.100 0.900 5 C 0.524 3.476 6 O -0.537 6.537 7 N -0.606 5.606 8 C 0.102 3.898 9 C -0.119 4.119 10 C -0.080 4.080 11 C 0.027 3.973 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.129 4.129 21 C 0.113 3.887 22 N -0.524 5.524 23 C 0.010 3.990 24 C 0.021 3.979 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.308 8.980 12.789 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.194 4.194 3 C -0.046 4.046 4 H 0.118 0.882 5 C 0.311 3.689 6 O -0.413 6.413 7 N -0.340 5.340 8 C -0.021 4.021 9 C -0.157 4.157 10 C -0.099 4.099 11 C -0.010 4.010 12 C -0.554 4.554 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.167 4.167 21 C -0.009 4.009 22 N -0.247 5.247 23 C -0.138 4.138 24 C -0.127 4.127 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.082 0.918 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.540 9.293 13.339 19.375 hybrid contribution -0.926 -0.801 -1.318 1.799 sum -11.467 8.493 12.021 18.658 Atomic orbital electron populations 1.22063 0.94997 1.02381 1.01764 1.22186 0.96763 0.96147 1.04278 1.21785 0.93248 0.95282 0.94270 0.88192 1.20362 0.89845 0.75953 0.82782 1.90619 1.64792 1.49552 1.36359 1.48152 1.07411 1.72069 1.06330 1.21889 0.94280 0.99965 0.85975 1.21827 0.98155 0.95558 1.00128 1.21183 0.93118 1.01485 0.94106 1.19129 0.96466 0.91433 0.93958 1.21274 1.27546 1.07691 0.98896 0.92545 1.25022 0.95315 0.95653 0.98471 1.69969 1.36307 1.11649 1.35519 0.86601 0.79284 0.77883 0.84610 1.19751 1.21084 1.21114 1.22028 1.00533 0.96806 0.97331 1.21648 0.79261 0.98610 1.01367 1.61800 1.24368 1.36243 1.02267 1.22771 0.88708 0.99703 1.02613 1.22536 1.02345 0.94848 0.92938 0.92241 0.92073 0.92144 0.90228 0.90437 0.90592 0.91555 0.89686 0.92368 0.92332 0.96591 0.96666 0.93096 0.91186 0.92170 0.91920 0.89732 0.93883 0.91398 0.91593 0.89982 0.91756 0.95231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.15 37.16 0.30 -1.00 16 2 C -0.15 -1.64 4.58 -26.73 -0.12 -1.77 16 3 C 0.07 0.78 1.45 -68.86 -0.10 0.68 16 4 H 0.10 1.05 6.08 -51.93 -0.32 0.74 16 5 C 0.52 7.94 6.87 -10.99 -0.08 7.86 16 6 O -0.54 -9.78 14.30 5.56 0.08 -9.70 16 7 N -0.61 -8.91 2.98 -173.00 -0.52 -9.43 16 8 C 0.10 1.36 5.86 -3.94 -0.02 1.33 16 9 C -0.12 -1.97 5.17 -26.83 -0.14 -2.11 16 10 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 11 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 12 C -0.52 -13.77 8.39 -34.44 -0.29 -14.06 16 13 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 16 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.13 -2.17 5.36 -26.59 -0.14 -2.31 16 21 C 0.11 1.72 6.44 -3.69 -0.02 1.70 16 22 N -0.52 -6.11 4.64 -244.58 -1.14 -7.25 16 23 C 0.01 0.09 8.94 60.07 0.54 0.62 16 24 C 0.02 0.23 7.97 60.06 0.48 0.71 16 25 H 0.06 0.46 7.57 -51.93 -0.39 0.06 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.48 4.86 -51.93 -0.25 0.22 16 28 H 0.08 0.91 7.27 -51.93 -0.38 0.53 16 29 H 0.08 0.88 6.12 -51.93 -0.32 0.56 16 30 H 0.08 0.84 4.95 -51.93 -0.26 0.59 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.50 6.91 -51.93 -0.36 1.14 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.34 7.00 -51.93 -0.36 0.97 16 42 H 0.04 0.33 4.46 -51.93 -0.23 0.09 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.53 7.86 -51.93 -0.41 0.12 16 45 H 0.08 1.10 6.30 -51.93 -0.33 0.77 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.03 0.28 5.30 -51.93 -0.28 0.01 16 LS Contribution 346.87 15.07 5.23 5.23 Total: -1.00 -30.96 346.87 -8.67 -39.63 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -8.03 Total: -0.80 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -0.01 Total: -8.04 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.91 Total: -42.29 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.96 -8.67 -39.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575408294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.995 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds