Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47475 * 2 1 4 4 H 1.09002 * 109.46668 * 53.24281 * 3 2 1 5 5 C 1.50697 * 109.46997 * 173.24088 * 3 2 1 6 6 O 1.21282 * 119.99651 * 102.45821 * 5 3 2 7 7 N 1.34779 * 120.00390 * 282.45740 * 5 3 2 8 8 C 1.46932 * 120.62492 * 4.84585 * 7 5 3 9 9 C 1.52757 * 109.00765 * 233.58277 * 8 7 5 10 10 C 1.53037 * 109.38760 * 305.59236 * 9 8 7 11 11 C 1.53001 * 109.44946 * 181.25156 * 10 9 8 12 12 C 1.50700 * 109.47174 * 64.94168 * 11 10 9 13 13 H 1.07999 * 119.99934 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00058 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00203 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99888 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47034 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47077 * 120.00196 * 16 14 12 19 19 H 1.48500 * 109.47139 * 240.00014 * 16 14 12 20 20 C 1.53046 * 109.53752 * 61.24218 * 10 9 8 21 21 C 1.46916 * 120.63371 * 185.13401 * 7 5 3 22 22 N 1.46895 * 109.47138 * 293.24481 * 3 2 1 23 23 C 1.46904 * 110.99805 * 321.00026 * 22 3 2 24 24 C 1.46895 * 111.00329 * 84.95564 * 22 3 2 25 25 H 1.09005 * 109.47565 * 75.39858 * 1 2 3 26 26 H 1.08999 * 109.47516 * 195.40400 * 1 2 3 27 27 H 1.09003 * 109.47160 * 315.40727 * 1 2 3 28 28 H 1.08997 * 109.46859 * 239.99841 * 2 1 3 29 29 H 1.08996 * 109.46712 * 120.00166 * 2 1 3 30 30 H 1.08998 * 109.58729 * 353.42604 * 8 7 5 31 31 H 1.09003 * 109.58243 * 113.85002 * 8 7 5 32 32 H 1.08998 * 109.56648 * 185.55496 * 9 8 7 33 33 H 1.09005 * 109.35739 * 65.50721 * 9 8 7 34 34 H 1.08999 * 109.46072 * 301.22266 * 10 9 8 35 35 H 1.09001 * 109.47173 * 184.94178 * 11 10 9 36 36 H 1.09005 * 109.47385 * 304.93591 * 11 10 9 37 37 H 0.96995 * 120.00041 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.49962 * 178.68326 * 20 10 9 39 39 H 1.08995 * 109.52321 * 58.59819 * 20 10 9 40 40 H 1.09009 * 109.58370 * 246.15472 * 21 7 5 41 41 H 1.09002 * 109.58711 * 6.43292 * 21 7 5 42 42 H 1.09001 * 109.47068 * 60.00453 * 23 22 3 43 43 H 1.09001 * 109.47048 * 180.02562 * 23 22 3 44 44 H 1.08996 * 109.47438 * 300.00000 * 23 22 3 45 45 H 1.08999 * 109.47179 * 64.72523 * 24 22 3 46 46 H 1.09000 * 109.47519 * 184.72062 * 24 22 3 47 47 H 1.08997 * 109.47336 * 304.72292 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5813 1.9900 0.8234 5 6 3.5377 1.4456 0.1672 6 8 4.2546 1.6331 -0.7929 7 7 4.0805 1.2402 1.3837 8 6 3.2314 0.9070 2.5356 9 6 3.5235 1.8883 3.6693 10 6 5.0237 1.8834 3.9715 11 6 5.3136 2.8426 5.1277 12 6 4.6511 2.3326 6.3816 13 1 4.0801 1.4163 6.3562 14 6 4.7740 3.0359 7.5611 15 7 5.4690 4.1520 7.5920 16 14 3.9523 2.4041 9.1152 17 1 3.2353 1.1384 8.8165 18 1 4.9836 2.1550 10.1542 19 1 2.9852 3.4164 9.6103 20 6 5.7974 2.3331 2.7299 21 6 5.5316 1.3513 1.5844 22 7 1.6880 2.0863 -1.2725 23 6 1.8423 1.1520 -2.3956 24 6 0.3256 2.6337 -1.2264 25 1 -0.3634 0.2591 -0.9945 26 1 -0.3634 -0.9907 0.2730 27 1 -0.3634 0.7318 0.7215 28 1 1.8932 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 2.1822 0.9823 2.2501 31 1 3.4496 -0.1076 2.8690 32 1 2.9718 1.5906 4.5610 33 1 3.2161 2.8899 3.3684 34 1 5.3351 0.8762 4.2484 35 1 6.3902 2.9063 5.2858 36 1 4.9227 3.8312 4.8865 37 1 5.5551 4.6469 8.4217 38 1 6.8641 2.3518 2.9530 39 1 5.4692 3.3305 2.4377 40 1 5.9412 0.3736 1.8386 41 1 5.9999 1.7172 0.6706 42 1 1.1883 0.2929 -2.2460 43 1 1.5756 1.6544 -3.3255 44 1 2.8777 0.8156 -2.4489 45 1 0.2800 3.4331 -0.4868 46 1 0.0598 3.0300 -2.2064 47 1 -0.3740 1.8443 -0.9518 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575408295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = -34.643757 kcal Electronic energy + Delta-G solvation = -23658.563663 eV Core-core repulsion = 20455.227282 eV Total energy + Delta-G solvation = -3203.336381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.51034 -38.30319 -36.88019 -34.05746 -32.67584 -31.95965 -30.83400 -28.76001 -27.94390 -27.54435 -24.61257 -23.26592 -22.71098 -22.27425 -20.89168 -19.59660 -18.58715 -17.22571 -16.50279 -16.29297 -15.66332 -15.25448 -14.82241 -14.54741 -14.47836 -13.89660 -13.69110 -13.31109 -13.07897 -13.04420 -12.77647 -12.68177 -12.40363 -12.22847 -12.02741 -11.86478 -11.74719 -11.69471 -11.41164 -11.19004 -11.08124 -10.93104 -10.77887 -10.69881 -10.45190 -10.10121 -9.71044 -9.45785 -9.25031 -8.96485 -8.37360 -8.32474 -8.23660 -6.01189 -4.03295 2.77581 3.09841 3.28610 3.36728 3.39183 3.92071 4.43739 4.46763 4.62153 4.70989 5.01244 5.05755 5.08822 5.18744 5.21956 5.31184 5.34147 5.41208 5.46403 5.48286 5.53021 5.55989 5.63382 5.68167 5.71480 5.76029 5.81605 5.91435 5.99543 6.00934 6.10394 6.39122 6.40286 6.52340 6.67888 6.84287 6.92765 6.97253 6.99819 7.10683 7.64392 7.66569 7.81055 7.98817 8.40607 8.41009 9.03546 9.60632 11.10107 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024133 B = 0.003877 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.950416 B = 7220.796537 C = 7798.865112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.157 4.157 3 C 0.066 3.934 4 H 0.103 0.897 5 C 0.523 3.477 6 O -0.535 6.535 7 N -0.607 5.607 8 C 0.102 3.898 9 C -0.120 4.120 10 C -0.080 4.080 11 C 0.027 3.973 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.129 4.129 21 C 0.114 3.886 22 N -0.522 5.522 23 C 0.019 3.981 24 C 0.006 3.994 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 -8.024 -15.818 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.196 4.196 3 C -0.046 4.046 4 H 0.121 0.879 5 C 0.310 3.690 6 O -0.411 6.411 7 N -0.341 5.341 8 C -0.021 4.021 9 C -0.158 4.158 10 C -0.098 4.098 11 C -0.010 4.010 12 C -0.554 4.554 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.167 4.167 21 C -0.008 4.008 22 N -0.245 5.245 23 C -0.129 4.129 24 C -0.142 4.142 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.049 0.951 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.160 -7.384 -16.304 20.106 hybrid contribution -0.972 -0.812 1.289 1.807 sum -10.132 -8.196 -15.015 19.882 Atomic orbital electron populations 1.22058 0.94985 1.02275 1.02014 1.22226 0.96864 0.96480 1.03992 1.21743 0.93510 0.95116 0.94214 0.87887 1.20361 0.89994 0.76139 0.82505 1.90623 1.62739 1.49017 1.38745 1.48149 1.08158 1.69399 1.08359 1.21905 0.93927 0.99510 0.86710 1.21838 0.98620 0.98445 0.96939 1.21178 0.93000 1.00712 0.94959 1.19134 0.96881 0.93902 0.91101 1.21271 1.31916 1.08313 0.93897 0.92561 1.25024 0.95476 0.95000 0.98969 1.69974 1.40865 1.15680 1.26912 0.86601 0.79310 0.78834 0.83625 1.19769 1.21098 1.21100 1.22026 1.00931 0.98658 0.95130 1.21632 0.79740 0.99650 0.99776 1.61778 1.25082 1.35688 1.01955 1.22568 1.02719 0.94479 0.93111 1.22815 0.88706 0.99913 1.02761 0.92008 0.92204 0.92026 0.90336 0.90483 0.90557 0.91554 0.89716 0.92278 0.92383 0.96592 0.96621 0.93097 0.91178 0.92075 0.92022 0.89770 0.95100 0.91774 0.90151 0.91388 0.91401 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.13 37.16 0.30 -0.88 16 2 C -0.16 -1.49 4.49 -26.73 -0.12 -1.61 16 3 C 0.07 0.79 1.46 -68.87 -0.10 0.69 16 4 H 0.10 1.18 6.54 -51.93 -0.34 0.84 16 5 C 0.52 7.94 6.91 -10.99 -0.08 7.87 16 6 O -0.53 -9.78 14.41 5.56 0.08 -9.70 16 7 N -0.61 -8.93 2.98 -173.03 -0.52 -9.44 16 8 C 0.10 1.36 5.36 -3.93 -0.02 1.34 16 9 C -0.12 -2.03 5.17 -26.84 -0.14 -2.17 16 10 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 11 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 12 C -0.52 -13.83 8.39 -34.44 -0.29 -14.12 16 13 H 0.06 1.45 7.05 -52.49 -0.37 1.08 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 16 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.13 -2.20 5.36 -26.61 -0.14 -2.34 16 21 C 0.11 1.74 6.42 -3.71 -0.02 1.72 16 22 N -0.52 -6.24 4.59 -244.59 -1.12 -7.36 16 23 C 0.02 0.20 8.15 60.07 0.49 0.69 16 24 C 0.01 0.05 9.19 60.06 0.55 0.60 16 25 H 0.06 0.45 5.16 -51.93 -0.27 0.18 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 28 H 0.08 0.78 5.95 -51.93 -0.31 0.47 16 29 H 0.08 0.72 6.58 -51.93 -0.34 0.38 16 30 H 0.08 0.85 4.92 -51.93 -0.26 0.59 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.51 6.91 -51.93 -0.36 1.15 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.08 1.34 7.04 -51.93 -0.37 0.97 16 42 H 0.03 0.28 4.97 -51.93 -0.26 0.02 16 43 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 44 H 0.08 1.04 6.69 -51.93 -0.35 0.69 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 47 H 0.05 0.35 4.03 -51.93 -0.21 0.14 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -31.23 346.48 -8.62 -39.85 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -8.02 Total: -0.97 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 0.02 Total: -7.92 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.90 Total: -42.52 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.23 -8.62 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575408295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.203 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds