Wall clock time and date at job start Tue Mar 31 2020 06:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 N 1.46906 * 109.46907 * 119.99696 * 2 1 3 5 5 C 1.46902 * 110.99840 * 183.95540 * 4 2 1 6 6 C 1.46895 * 110.99789 * 60.00093 * 4 2 1 7 7 C 1.50702 * 109.46844 * 189.99698 * 6 4 2 8 8 O 1.21283 * 120.00261 * 0.02562 * 7 6 4 9 9 N 1.34778 * 119.99849 * 179.97438 * 7 6 4 10 10 C 1.46926 * 120.63144 * 359.73008 * 9 7 6 11 11 C 1.53621 * 108.54377 * 126.36458 * 10 9 7 12 12 C 1.53045 * 109.24392 * 54.85490 * 11 10 9 13 13 C 1.53001 * 109.45781 * 178.49110 * 12 11 10 14 14 C 1.50699 * 109.47239 * 295.06653 * 13 12 11 15 15 H 1.08004 * 119.99861 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00117 * 180.02562 * 14 13 12 17 17 N 1.31506 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99849 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47183 * 60.00045 * 18 16 14 20 20 H 1.48496 * 109.46997 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47203 * 299.99814 * 18 16 14 22 22 C 1.53036 * 109.53704 * 298.50956 * 12 11 10 23 23 C 1.46934 * 120.62654 * 179.97438 * 9 7 6 24 24 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47375 * 300.00092 * 1 2 3 26 26 H 1.09002 * 109.47045 * 60.00167 * 1 2 3 27 27 H 1.08992 * 109.47280 * 240.00073 * 2 1 3 28 28 H 1.09004 * 109.47006 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47097 * 299.99801 * 3 2 1 30 30 H 1.09001 * 109.47142 * 59.99766 * 3 2 1 31 31 H 1.09000 * 109.46807 * 60.00124 * 5 4 2 32 32 H 1.08997 * 109.46913 * 179.97438 * 5 4 2 33 33 H 1.09005 * 109.47092 * 300.00264 * 5 4 2 34 34 H 1.08996 * 109.47298 * 309.99446 * 6 4 2 35 35 H 1.08998 * 109.47027 * 70.00202 * 6 4 2 36 36 H 1.08999 * 109.58272 * 246.19727 * 10 9 7 37 37 H 1.08993 * 109.58607 * 6.61844 * 10 9 7 38 38 H 1.09001 * 109.63247 * 294.86048 * 11 10 9 39 39 H 1.08998 * 109.43209 * 174.72411 * 11 10 9 40 40 H 1.09000 * 109.44708 * 58.52560 * 12 11 10 41 41 H 1.08995 * 109.47464 * 55.06630 * 13 12 11 42 42 H 1.08994 * 109.47120 * 175.06989 * 13 12 11 43 43 H 0.97004 * 119.99599 * 179.97438 * 17 16 14 44 44 H 1.09002 * 109.49949 * 301.41605 * 22 12 11 45 45 H 1.09000 * 109.52431 * 181.33638 * 22 12 11 46 46 H 1.08990 * 109.58995 * 353.37826 * 23 9 7 47 47 H 1.08997 * 109.58108 * 113.66238 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4850 -0.6307 1.2817 6 6 1.5486 -2.0834 1.2335 7 6 1.8579 -2.6858 2.5798 8 8 2.4154 -2.0215 3.4277 9 7 1.5141 -3.9623 2.8420 10 6 0.8320 -4.7773 1.8275 11 6 1.6250 -6.0784 1.6320 12 6 1.7959 -6.7731 2.9850 13 6 2.5527 -8.0886 2.7905 14 6 1.7189 -9.0297 1.9598 15 1 0.7466 -8.7204 1.6056 16 6 2.1972 -10.2857 1.6520 17 7 3.3813 -10.6621 2.0829 18 14 1.1633 -11.4526 0.6229 19 1 0.8925 -10.8373 -0.7013 20 1 1.8978 -12.7292 0.4341 21 1 -0.1221 -11.7185 1.3173 22 6 2.5860 -5.8653 3.9302 23 6 1.8095 -4.5636 4.1497 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.8028 0.4111 1.3253 32 1 3.8208 -1.1505 2.1790 33 1 3.9187 -1.1064 0.4020 34 1 0.4722 -2.1068 1.0637 35 1 2.0518 -2.6565 0.4548 36 1 -0.1785 -5.0091 2.1640 37 1 0.7892 -4.2289 0.8865 38 1 2.6054 -5.8504 1.2137 39 1 1.0825 -6.7351 0.9519 40 1 0.8151 -6.9784 3.4140 41 1 3.4962 -7.8931 2.2810 42 1 2.7513 -8.5405 3.7622 43 1 3.7177 -11.5459 1.8666 44 1 3.5574 -5.6393 3.4903 45 1 2.7281 -6.3699 4.8859 46 1 2.4118 -3.8742 4.7412 47 1 0.8773 -4.7760 4.6731 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576638515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:31 Heat of formation + Delta-G solvation = -44.060946 kcal Electronic energy + Delta-G solvation = -23135.024787 eV Core-core repulsion = 19931.280045 eV Total energy + Delta-G solvation = -3203.744741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.19827 -38.27459 -36.97885 -34.00818 -32.44688 -32.08314 -30.83986 -29.22484 -28.01924 -26.53541 -24.96213 -24.15909 -22.82516 -21.72780 -20.31170 -19.67651 -18.58893 -17.21919 -16.31475 -16.23241 -15.79671 -15.24202 -14.98439 -14.56599 -14.35828 -13.95771 -13.69111 -13.51297 -13.13836 -12.86740 -12.73560 -12.71281 -12.45614 -12.23321 -12.15066 -11.98749 -11.77619 -11.45823 -11.25281 -11.20225 -11.01096 -10.86097 -10.80981 -10.70444 -10.46621 -10.14152 -9.73304 -9.51344 -9.27615 -9.00187 -8.45006 -8.38071 -8.28643 -6.02322 -4.04642 2.77564 3.03598 3.29723 3.35265 3.36466 3.80773 4.42641 4.57696 4.66070 4.74126 5.01944 5.07000 5.12376 5.19229 5.32373 5.37402 5.40721 5.43050 5.45578 5.48228 5.53641 5.57267 5.59750 5.66769 5.69892 5.74759 5.89695 5.98975 6.00799 6.06486 6.12997 6.36906 6.37402 6.49942 6.65868 6.83095 6.94608 6.94965 6.97339 7.08500 7.61038 7.64309 7.79059 7.97285 8.36804 8.39408 9.01751 9.59219 11.08904 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025559 B = 0.003399 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.254151 B = 8234.980703 C = 8771.124588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.074 3.926 3 C -0.146 4.146 4 N -0.520 5.520 5 C 0.016 3.984 6 C 0.032 3.968 7 C 0.515 3.485 8 O -0.534 6.534 9 N -0.608 5.608 10 C 0.103 3.897 11 C -0.118 4.118 12 C -0.080 4.080 13 C 0.028 3.972 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.129 4.129 23 C 0.114 3.886 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.019 0.981 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.015 0.985 42 H 0.016 0.984 43 H 0.261 0.739 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 19.550 -3.979 20.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 C -0.203 4.203 4 N -0.245 5.245 5 C -0.132 4.132 6 C -0.099 4.099 7 C 0.303 3.697 8 O -0.411 6.411 9 N -0.342 5.342 10 C -0.020 4.020 11 C -0.157 4.157 12 C -0.099 4.099 13 C -0.009 4.009 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.167 4.167 23 C -0.008 4.008 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.037 0.963 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.548 20.005 -3.122 20.751 hybrid contribution -0.199 -1.388 -1.393 1.976 sum -4.747 18.617 -4.514 19.736 Atomic orbital electron populations 1.21930 0.94309 1.02036 1.02361 1.21669 0.95787 0.95249 0.90655 1.21891 1.01210 0.95031 1.02195 1.61737 1.11408 1.12695 1.38677 1.22601 0.86386 1.02550 1.01627 1.22090 1.02675 0.89895 0.95235 1.20404 0.78677 0.81196 0.89439 1.90628 1.42109 1.60238 1.48109 1.48187 1.58859 1.11446 1.15691 1.22026 0.96272 0.93113 0.90556 1.21974 1.00054 0.94136 0.99487 1.21186 0.99180 0.96432 0.93105 1.19116 0.95196 0.89684 0.96913 1.21200 1.03014 0.98804 1.32581 0.92649 1.25024 0.95003 0.98232 0.96190 1.69951 1.17648 1.19986 1.45873 0.86705 0.80396 0.80346 0.80822 1.20289 1.21365 1.20274 1.22014 0.99196 0.94667 1.00825 1.21628 0.99953 0.95329 0.83933 0.92528 0.91578 0.92088 0.94213 0.92388 0.92227 0.91637 0.91125 0.89365 0.96254 0.87666 0.91931 0.91392 0.90775 0.92346 0.89738 0.92322 0.96694 0.96590 0.92967 0.92177 0.91155 0.89721 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.99 37.16 0.33 -0.86 16 2 C 0.07 0.69 2.68 -67.71 -0.18 0.51 16 3 C -0.15 -1.17 8.83 37.16 0.33 -0.84 16 4 N -0.52 -6.14 4.37 -236.33 -1.03 -7.17 16 5 C 0.02 0.19 8.75 60.07 0.53 0.72 16 6 C 0.03 0.37 3.61 -4.98 -0.02 0.36 16 7 C 0.52 7.66 7.39 -10.98 -0.08 7.58 16 8 O -0.53 -9.53 13.75 5.55 0.08 -9.45 16 9 N -0.61 -8.81 2.97 -172.53 -0.51 -9.32 16 10 C 0.10 1.35 6.37 -3.49 -0.02 1.33 16 11 C -0.12 -1.98 5.21 -26.39 -0.14 -2.12 16 12 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 13 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 14 C -0.52 -13.87 8.39 -34.44 -0.29 -14.15 16 15 H 0.06 1.42 7.06 -52.48 -0.37 1.05 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 18 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.13 -2.16 5.36 -26.63 -0.14 -2.30 16 23 C 0.11 1.71 6.43 -3.73 -0.02 1.68 16 24 H 0.06 0.44 6.20 -51.93 -0.32 0.12 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.46 6.34 -51.93 -0.33 0.13 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.74 6.23 -51.93 -0.32 0.42 16 32 H 0.09 1.26 5.83 -51.93 -0.30 0.96 16 33 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.11 1.06 5.62 -51.93 -0.29 0.77 16 35 H 0.06 0.69 7.68 -51.93 -0.40 0.30 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.50 6.91 -51.93 -0.36 1.14 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.08 1.32 7.00 -51.93 -0.36 0.95 16 47 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -30.82 356.32 -8.92 -39.75 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.42 Total: -1.71 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -0.12 Total: -7.78 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.81 Total: -42.20 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.82 -8.92 -39.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576638515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.312 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds