Wall clock time and date at job start Tue Mar 31 2020 06:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47141 * 2 1 4 4 N 1.46496 * 109.47111 * 180.02562 * 3 2 1 5 5 C 1.34776 * 119.99710 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00234 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99867 * 180.02562 * 5 4 3 8 8 C 1.53002 * 109.47063 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46936 * 179.97438 * 8 7 5 10 10 N 1.46902 * 109.47016 * 181.72507 * 9 8 7 11 11 C 1.46900 * 110.99732 * 76.25164 * 10 9 8 12 12 C 1.50697 * 109.46877 * 190.00135 * 11 10 9 13 13 H 1.07998 * 120.00274 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00063 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99676 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00337 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47195 * 89.99696 * 16 14 12 18 18 H 1.48497 * 109.47212 * 210.00324 * 16 14 12 19 19 H 1.48502 * 109.46718 * 329.99800 * 16 14 12 20 20 C 1.46896 * 110.99861 * 200.19952 * 10 9 8 21 21 C 1.53006 * 109.46731 * 76.57782 * 20 10 9 22 22 C 1.53001 * 117.49923 * 244.79051 * 21 20 10 23 23 C 1.53001 * 60.00107 * 252.51401 * 22 21 20 24 24 H 1.08999 * 109.46830 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46860 * 300.00149 * 1 2 3 26 26 H 1.09001 * 109.46931 * 59.99983 * 1 2 3 27 27 H 1.09001 * 109.46815 * 240.00609 * 2 1 3 28 28 H 1.08997 * 109.47401 * 120.00040 * 2 1 3 29 29 H 1.09004 * 109.46954 * 60.00075 * 3 2 1 30 30 H 1.09005 * 109.47080 * 300.00582 * 3 2 1 31 31 H 0.97004 * 120.00131 * 0.02562 * 4 3 2 32 32 H 1.08997 * 109.47118 * 59.99197 * 7 5 4 33 33 H 1.09001 * 109.46545 * 299.99442 * 7 5 4 34 34 H 1.09004 * 109.47265 * 59.99616 * 8 7 5 35 35 H 1.08997 * 109.46900 * 299.99698 * 8 7 5 36 36 H 1.09000 * 109.46832 * 61.72781 * 9 8 7 37 37 H 1.08997 * 109.47410 * 301.72524 * 9 8 7 38 38 H 1.09009 * 109.47183 * 309.99507 * 11 10 9 39 39 H 1.09001 * 109.47421 * 69.99889 * 11 10 9 40 40 H 0.97012 * 120.00062 * 180.02562 * 15 14 12 41 41 H 1.09006 * 109.47142 * 196.57037 * 20 10 9 42 42 H 1.08997 * 109.47495 * 316.57842 * 20 10 9 43 43 H 1.09001 * 115.55425 * 30.50360 * 21 20 10 44 44 H 1.09007 * 117.49622 * 0.02562 * 22 21 20 45 45 H 1.08993 * 117.50106 * 145.01976 * 22 21 20 46 46 H 1.08998 * 117.49722 * 252.50559 * 23 22 21 47 47 H 1.08997 * 117.49587 * 107.49199 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1788 2.6098 -0.0002 6 8 3.5724 3.6601 0.0002 7 6 5.6859 2.6098 -0.0014 8 6 6.1958 4.0524 -0.0013 9 6 7.7259 4.0524 -0.0019 10 7 8.2155 5.4367 0.0399 11 6 8.0842 6.0010 1.3899 12 6 8.3609 7.4816 1.3445 13 1 8.6098 7.9560 0.4067 14 6 8.2962 8.2308 2.5002 15 7 7.9926 7.6533 3.6420 16 14 8.6399 10.0660 2.4441 17 1 7.3732 10.7994 2.1931 18 1 9.2154 10.5018 3.7418 19 1 9.6043 10.3558 1.3527 20 6 9.6042 5.5184 -0.4319 21 6 9.6310 5.4172 -1.9584 22 6 10.3192 4.1970 -2.5736 23 6 10.9854 5.5721 -2.6530 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9900 0.6025 -0.0013 32 1 6.0485 2.0966 -0.8920 33 1 6.0498 2.0953 0.8879 34 1 5.8332 4.5659 0.8892 35 1 5.8318 4.5664 -0.8908 36 1 8.0888 3.5658 -0.9072 37 1 8.0896 3.5118 0.8719 38 1 7.0721 5.8316 1.7576 39 1 8.7986 5.5181 2.0566 40 1 7.9467 8.1804 4.4551 41 1 10.0375 6.4698 -0.1232 42 1 10.1823 4.6997 -0.0033 43 1 8.7542 5.8127 -2.4712 44 1 10.7526 3.4661 -1.8908 45 1 9.8952 3.7894 -3.4912 46 1 10.9997 6.0691 -3.6230 47 1 11.8574 5.7460 -2.0225 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578761820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:53 Heat of formation + Delta-G solvation = -34.763150 kcal Electronic energy + Delta-G solvation = -22011.198963 eV Core-core repulsion = 18807.857405 eV Total energy + Delta-G solvation = -3203.341558 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.64681 -37.84831 -36.06836 -35.60280 -33.18332 -32.69673 -31.96247 -27.84388 -27.30105 -25.96554 -24.02856 -22.27184 -21.97503 -21.70385 -20.42491 -19.91366 -19.56654 -16.88676 -16.41030 -16.10204 -16.05965 -15.29945 -15.25755 -14.74738 -14.09580 -14.05221 -13.82114 -13.43771 -13.41333 -13.06614 -12.78537 -12.41724 -12.34871 -11.75981 -11.71496 -11.51514 -11.45883 -11.29386 -11.19358 -11.16599 -10.93332 -10.82603 -10.57713 -10.51861 -10.16384 -10.04175 -9.69573 -9.50266 -9.41922 -9.11534 -9.06712 -8.35859 -7.16559 -5.96031 -3.96467 2.78223 3.16416 3.37456 3.43125 3.46626 4.16988 4.48504 4.53226 4.64389 4.76646 4.87509 4.96325 5.16497 5.28655 5.30927 5.31472 5.34665 5.35452 5.40124 5.47318 5.61388 5.68647 5.79960 5.82410 5.83942 5.86877 5.93551 5.99492 6.04437 6.16140 6.22647 6.36201 6.38109 6.39884 6.57302 6.69862 6.87553 6.96072 7.39189 7.41837 7.48041 7.89185 8.19822 8.30162 8.32875 8.63917 9.11532 9.67305 11.14911 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012662 B = 0.003554 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.888639 B = 7877.641068 C = 9706.737710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.116 3.884 4 N -0.741 5.741 5 C 0.511 3.489 6 O -0.530 6.530 7 C -0.137 4.137 8 C -0.097 4.097 9 C 0.059 3.941 10 N -0.534 5.534 11 C 0.192 3.808 12 C -0.505 4.505 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.091 3.909 21 C -0.130 4.130 22 C -0.192 4.192 23 C -0.185 4.185 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.022 0.978 38 H 0.034 0.966 39 H -0.012 1.012 40 H 0.260 0.740 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.824 -17.297 -9.434 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.007 4.007 4 N -0.394 5.394 5 C 0.298 3.702 6 O -0.406 6.406 7 C -0.178 4.178 8 C -0.136 4.136 9 C -0.070 4.070 10 N -0.258 5.258 11 C 0.067 3.933 12 C -0.544 4.544 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.037 4.037 21 C -0.148 4.148 22 C -0.229 4.229 23 C -0.223 4.223 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.232 0.768 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.006 0.994 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.038 0.962 43 H 0.126 0.874 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.589 -16.181 -9.540 19.906 hybrid contribution 0.852 -0.016 0.660 1.078 sum -5.738 -16.197 -8.881 19.342 Atomic orbital electron populations 1.21683 0.94651 1.02029 1.02430 1.21734 0.96947 0.96030 1.02597 1.21368 0.80109 0.96824 1.02433 1.46096 1.07113 1.08908 1.77303 1.20945 0.90708 0.83263 0.75326 1.90740 1.70529 1.31239 1.48052 1.21678 0.90883 1.01419 1.03784 1.21301 0.95075 0.92698 1.04480 1.22010 0.94640 0.91207 0.99152 1.61963 1.18867 1.15909 1.29082 1.19766 0.96764 0.94608 0.82147 1.21185 1.46388 0.92793 0.94035 0.91823 1.24984 0.95584 0.98633 0.95435 1.69965 1.49249 1.35858 0.98796 0.86527 0.78492 0.85426 0.77142 1.20633 1.21425 1.19877 1.21573 0.90186 1.01384 0.90570 1.22470 0.95577 1.00338 0.96462 1.23003 1.05620 0.91497 1.02764 1.22892 0.97313 0.99987 1.02085 0.92278 0.92283 0.92349 0.91409 0.91345 0.91585 0.91670 0.76791 0.89300 0.89206 0.90638 0.90915 0.92204 0.95990 0.94761 0.99408 0.93024 0.89188 0.96249 0.87359 0.89475 0.89609 0.89354 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.53 16 2 C -0.14 -0.87 6.05 -26.73 -0.16 -1.03 16 3 C 0.12 1.12 5.67 -4.04 -0.02 1.10 16 4 N -0.74 -7.56 5.56 -60.29 -0.33 -7.90 16 5 C 0.51 7.28 7.83 -10.98 -0.09 7.19 16 6 O -0.53 -10.19 15.98 5.55 0.09 -10.11 16 7 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 8 C -0.10 -1.70 4.64 -26.73 -0.12 -1.82 16 9 C 0.06 1.05 4.81 -3.82 -0.02 1.03 16 10 N -0.53 -11.60 4.35 -236.07 -1.03 -12.63 16 11 C 0.19 5.08 4.54 -4.98 -0.02 5.05 16 12 C -0.51 -14.44 8.22 -34.44 -0.28 -14.72 16 13 H 0.06 1.81 7.32 -52.49 -0.38 1.42 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 16 Si 0.90 22.17 29.54 -169.99 -5.02 17.14 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.09 1.79 5.06 -3.82 -0.02 1.77 16 21 C -0.13 -2.10 5.22 -90.61 -0.47 -2.58 16 22 C -0.19 -2.55 10.04 -26.73 -0.27 -2.81 16 23 C -0.19 -2.55 10.25 -26.73 -0.27 -2.82 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.40 2.76 8.47 -40.82 -0.35 2.41 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.58 6.73 -51.93 -0.35 1.23 16 35 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 36 H 0.06 0.94 7.21 -51.93 -0.37 0.56 16 37 H 0.02 0.40 7.99 -51.93 -0.41 -0.02 16 38 H 0.03 0.98 6.64 -51.92 -0.34 0.63 16 39 H -0.01 -0.33 8.12 -51.93 -0.42 -0.76 16 40 H 0.26 7.46 8.31 -40.81 -0.34 7.12 16 41 H 0.09 1.97 6.58 -51.93 -0.34 1.63 16 42 H 0.02 0.37 7.72 -51.93 -0.40 -0.03 16 43 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 44 H 0.09 1.12 8.04 -51.93 -0.42 0.71 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -33.22 380.51 -10.31 -43.53 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -8.85 Total: 1.29 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.64 Total: -10.58 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.62 Total: -47.02 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.22 -10.31 -43.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578761820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.771 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds