Wall clock time and date at job start Tue Mar 31 2020 06:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46825 * 2 1 4 4 N 1.46904 * 109.46776 * 179.97438 * 3 2 1 5 5 C 1.46895 * 110.99874 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47429 * 34.99687 * 5 4 3 7 7 C 1.53000 * 109.47066 * 274.99631 * 5 4 3 8 8 C 1.50697 * 109.47201 * 154.99800 * 5 4 3 9 9 O 1.21286 * 120.00086 * 24.51102 * 8 5 4 10 10 N 1.34780 * 120.00352 * 204.51478 * 8 5 4 11 11 C 1.46922 * 120.62660 * 4.34346 * 10 8 5 12 12 C 1.52760 * 109.01007 * 233.58540 * 11 10 8 13 13 C 1.53046 * 109.38368 * 305.59133 * 12 11 10 14 14 C 1.52996 * 109.44586 * 181.25285 * 13 12 11 15 15 C 1.50696 * 109.47507 * 64.94085 * 14 13 12 16 16 H 1.07997 * 120.00014 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00384 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99604 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46965 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46860 * 119.99772 * 19 17 15 22 22 H 1.48497 * 109.47079 * 239.99838 * 19 17 15 23 23 C 1.53041 * 109.53757 * 61.23878 * 13 12 11 24 24 C 1.46928 * 120.63141 * 184.62846 * 10 8 5 25 25 H 1.08999 * 109.47248 * 300.00102 * 1 2 3 26 26 H 1.09000 * 109.46767 * 60.00603 * 1 2 3 27 27 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47248 * 239.99898 * 2 1 3 29 29 H 1.08996 * 109.46435 * 119.99788 * 2 1 3 30 30 H 1.08999 * 109.47291 * 59.99924 * 3 2 1 31 31 H 1.09000 * 109.46956 * 299.99281 * 3 2 1 32 32 H 1.00896 * 111.00340 * 56.04378 * 4 3 2 33 33 H 1.09007 * 109.47214 * 175.02692 * 7 5 4 34 34 H 1.08992 * 109.47276 * 295.02676 * 7 5 4 35 35 H 1.09003 * 109.46977 * 55.02748 * 7 5 4 36 36 H 1.08994 * 109.59061 * 353.42435 * 11 10 8 37 37 H 1.09001 * 109.58733 * 113.84745 * 11 10 8 38 38 H 1.09000 * 109.56847 * 185.55658 * 12 11 10 39 39 H 1.09004 * 109.36061 * 65.50135 * 12 11 10 40 40 H 1.08998 * 109.46045 * 301.21627 * 13 12 11 41 41 H 1.09009 * 109.47104 * 184.94044 * 14 13 12 42 42 H 1.08999 * 109.47539 * 304.93171 * 14 13 12 43 43 H 0.96994 * 119.99537 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.49748 * 178.68200 * 23 13 12 45 45 H 1.09003 * 109.49374 * 58.58279 * 23 13 12 46 46 H 1.08999 * 109.58334 * 246.15389 * 24 10 8 47 47 H 1.08991 * 109.58759 * 6.43353 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.8139 0.0013 6 1 3.3795 3.4547 0.5906 7 6 4.1015 3.3355 -1.4356 8 6 5.4173 2.8213 0.6023 9 8 6.0922 1.8137 0.5837 10 7 5.9034 3.9475 1.1607 11 6 5.0644 5.1481 1.2763 12 6 5.7979 6.3304 0.6457 13 6 7.1828 6.4672 1.2826 14 6 7.9066 7.6700 0.6742 15 6 7.1723 8.9348 1.0375 16 1 6.2785 8.8857 1.6416 17 6 7.6416 10.1548 0.5987 18 7 8.7305 10.2146 -0.1365 19 14 6.7310 11.7225 1.0485 20 1 5.5457 11.3860 1.8773 21 1 7.6341 12.6163 1.8170 22 1 6.2897 12.4115 -0.1907 23 6 7.9948 5.1969 1.0198 24 6 7.2844 4.0000 1.6598 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8901 32 1 3.8710 0.9163 -0.7804 33 1 4.4079 4.3816 -1.4287 34 1 4.8246 2.7489 -2.0022 35 1 3.1191 3.2476 -1.8995 36 1 4.1205 4.9858 0.7559 37 1 4.8723 5.3598 2.3282 38 1 5.2285 7.2446 0.8132 39 1 5.9054 6.1593 -0.4254 40 1 7.0753 6.6137 2.3574 41 1 8.9241 7.7163 1.0626 42 1 7.9363 7.5657 -0.4104 43 1 9.0609 11.0728 -0.4448 44 1 8.9889 5.3044 1.4535 45 1 8.0815 5.0365 -0.0549 46 1 7.2770 4.1161 2.7435 47 1 7.8040 3.0794 1.3945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578772314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:57 Heat of formation + Delta-G solvation = -62.557117 kcal Electronic energy + Delta-G solvation = -22901.088549 eV Core-core repulsion = 19696.541754 eV Total energy + Delta-G solvation = -3204.546795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18712 -37.72206 -36.69072 -34.09501 -33.72324 -32.12371 -30.90065 -29.64210 -28.03802 -25.69839 -24.87294 -23.46946 -22.69402 -21.68578 -21.43262 -19.73429 -18.44719 -17.28037 -16.33362 -16.07298 -15.84369 -15.09316 -14.98012 -14.55836 -14.33728 -13.83165 -13.81816 -13.65036 -13.22547 -13.14065 -12.85941 -12.66623 -12.37448 -12.33686 -12.23411 -11.85666 -11.75671 -11.52768 -11.32465 -11.20556 -11.01021 -10.98832 -10.79422 -10.71587 -10.47082 -10.11867 -9.74120 -9.53059 -9.26237 -8.97914 -8.55921 -8.38459 -8.29660 -6.02564 -4.04597 2.79817 3.08463 3.27723 3.35924 3.38480 4.00391 4.42689 4.55398 4.65141 4.75486 4.83728 4.91012 5.05198 5.15945 5.21214 5.32507 5.36526 5.37577 5.46777 5.47631 5.48466 5.51801 5.58357 5.70055 5.72487 5.75596 5.88747 5.89907 5.98451 6.00634 6.09640 6.37758 6.38448 6.50317 6.63827 6.78201 6.95518 6.98426 7.09060 7.16054 7.63839 7.65329 7.79279 7.97388 8.39510 8.39781 9.02258 9.59347 11.08713 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.003301 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.275243 B = 8480.844352 C = 9195.491744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.058 3.942 4 N -0.672 5.672 5 C 0.067 3.933 6 H 0.100 0.900 7 C -0.178 4.178 8 C 0.524 3.476 9 O -0.539 6.539 10 N -0.606 5.606 11 C 0.102 3.898 12 C -0.119 4.119 13 C -0.080 4.080 14 C 0.027 3.973 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.129 4.129 24 C 0.114 3.886 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.349 0.651 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.562 -15.818 -0.291 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.071 4.071 4 N -0.303 5.303 5 C -0.047 4.047 6 H 0.117 0.883 7 C -0.237 4.237 8 C 0.311 3.689 9 O -0.415 6.415 10 N -0.340 5.340 11 C -0.021 4.021 12 C -0.157 4.157 13 C -0.099 4.099 14 C -0.010 4.010 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.167 4.167 24 C -0.009 4.009 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.168 0.832 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.038 -16.316 0.305 20.887 hybrid contribution -0.587 1.466 -0.741 1.745 sum -13.625 -14.849 -0.436 20.158 Atomic orbital electron populations 1.21731 0.95509 1.01787 1.01838 1.21495 0.95519 0.96276 1.02792 1.22069 0.87126 0.97268 1.00606 1.60165 1.06976 1.11958 1.51219 1.21507 0.94835 0.91370 0.96943 0.88262 1.22397 1.02676 1.03158 0.95488 1.20384 0.88155 0.82675 0.77707 1.90640 1.60251 1.32452 1.58167 1.48149 1.13909 1.12055 1.59912 1.21887 0.93532 0.85346 1.01306 1.21835 0.97567 0.96630 0.99693 1.21183 0.93976 0.95014 0.99713 1.19129 0.95292 0.90667 0.95893 1.21271 1.10648 0.91323 1.32117 0.92552 1.25034 0.95070 0.99152 0.95279 1.69977 1.22252 1.25103 1.36117 0.86592 0.79868 0.83703 0.78168 1.19752 1.21091 1.21115 1.22026 0.99174 0.94697 1.00819 1.21635 0.81355 0.99924 0.97944 0.92579 0.92838 0.92534 0.92090 0.90986 0.90975 0.95085 0.83166 0.90700 0.91638 0.91620 0.90620 0.91536 0.89695 0.92345 0.92329 0.96589 0.96674 0.93100 0.91157 0.92171 0.91940 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.93 6.19 -26.73 -0.17 -1.10 16 3 C 0.06 0.50 5.48 -3.82 -0.02 0.48 16 4 N -0.67 -7.41 5.86 -107.95 -0.63 -8.05 16 5 C 0.07 0.77 2.15 -68.87 -0.15 0.62 16 6 H 0.10 1.03 5.97 -51.93 -0.31 0.72 16 7 C -0.18 -1.82 9.07 37.16 0.34 -1.48 16 8 C 0.52 7.93 6.91 -10.99 -0.08 7.85 16 9 O -0.54 -9.92 16.04 5.55 0.09 -9.83 16 10 N -0.61 -8.94 2.98 -173.04 -0.52 -9.45 16 11 C 0.10 1.36 6.19 -3.94 -0.02 1.34 16 12 C -0.12 -1.98 5.17 -26.83 -0.14 -2.12 16 13 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 14 C 0.03 0.67 4.45 -27.89 -0.12 0.54 16 15 C -0.52 -13.76 8.39 -34.44 -0.29 -14.05 16 16 H 0.06 1.45 7.05 -52.49 -0.37 1.08 16 17 C 0.06 1.55 5.46 -17.81 -0.10 1.45 16 18 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 19 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.13 -2.17 5.36 -26.61 -0.14 -2.31 16 24 C 0.11 1.73 6.42 -3.71 -0.02 1.71 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 31 H 0.03 0.24 7.36 -51.93 -0.38 -0.14 16 32 H 0.35 3.78 8.48 -39.29 -0.33 3.45 16 33 H 0.07 0.80 7.77 -51.93 -0.40 0.40 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.55 7.36 -51.93 -0.38 0.17 16 36 H 0.08 0.83 5.11 -51.93 -0.27 0.56 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.50 6.91 -51.93 -0.36 1.14 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.08 1.33 7.03 -51.93 -0.37 0.97 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -30.93 365.69 -9.21 -40.15 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.64 Total: 0.66 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.74 Total: -9.36 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.41 Total: -43.13 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.93 -9.21 -40.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578772314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.412 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds