Wall clock time and date at job start Tue Mar 31 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47368 * 2 1 4 4 N 1.46904 * 109.46869 * 180.02562 * 3 2 1 5 5 C 1.46902 * 110.99621 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47416 * 325.00200 * 5 4 3 7 7 C 1.53000 * 109.47027 * 85.00277 * 5 4 3 8 8 C 1.50708 * 109.46920 * 204.99882 * 5 4 3 9 9 O 1.21283 * 119.99661 * 342.20635 * 8 5 4 10 10 N 1.34773 * 119.99938 * 162.20313 * 8 5 4 11 11 C 1.46931 * 120.62848 * 354.99193 * 10 8 5 12 12 C 1.53187 * 108.77691 * 233.58401 * 11 10 8 13 13 C 1.53041 * 109.31349 * 305.37254 * 12 11 10 14 14 C 1.53004 * 109.46048 * 181.38576 * 13 12 11 15 15 C 1.50697 * 109.47205 * 64.92929 * 14 13 12 16 16 H 1.08005 * 120.00210 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99817 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99775 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99742 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47028 * 60.00372 * 19 17 15 21 21 H 1.48506 * 109.46831 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47094 * 299.99699 * 19 17 15 23 23 C 1.53039 * 109.54378 * 61.35949 * 13 12 11 24 24 C 1.46917 * 120.63225 * 174.96732 * 10 8 5 25 25 H 1.09004 * 109.46457 * 299.99945 * 1 2 3 26 26 H 1.08997 * 109.47210 * 59.99155 * 1 2 3 27 27 H 1.08995 * 109.47433 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46977 * 240.00061 * 2 1 3 29 29 H 1.08997 * 109.47210 * 120.00845 * 2 1 3 30 30 H 1.08996 * 109.47045 * 60.00794 * 3 2 1 31 31 H 1.08994 * 109.47312 * 300.00180 * 3 2 1 32 32 H 1.00907 * 111.00159 * 303.95703 * 4 3 2 33 33 H 1.09004 * 109.47455 * 63.77431 * 7 5 4 34 34 H 1.08998 * 109.47082 * 183.77581 * 7 5 4 35 35 H 1.09002 * 109.47452 * 303.77935 * 7 5 4 36 36 H 1.09003 * 109.58741 * 353.37493 * 11 10 8 37 37 H 1.09005 * 109.58506 * 113.79916 * 11 10 8 38 38 H 1.09007 * 109.49651 * 65.31457 * 12 11 10 39 39 H 1.08994 * 109.49945 * 185.41398 * 12 11 10 40 40 H 1.09010 * 109.45900 * 301.33836 * 13 12 11 41 41 H 1.09001 * 109.46657 * 184.92842 * 14 13 12 42 42 H 1.08996 * 109.46874 * 304.92117 * 14 13 12 43 43 H 0.97001 * 119.99464 * 180.02562 * 18 17 15 44 44 H 1.08995 * 109.49937 * 178.68316 * 23 13 12 45 45 H 1.09004 * 109.52056 * 58.60506 * 23 13 12 46 46 H 1.08996 * 109.59361 * 246.20231 * 24 10 8 47 47 H 1.09004 * 109.58338 * 6.48738 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4423 -0.0006 5 6 4.0356 2.8138 0.0000 6 1 3.3797 3.4550 -0.5887 7 6 4.1017 3.3341 1.4373 8 6 5.4176 2.8216 -0.6011 9 8 6.0445 1.7874 -0.6935 10 7 5.9568 3.9776 -1.0359 11 6 5.1702 5.2187 -1.0320 12 6 5.2068 5.8301 -2.4361 13 6 6.6627 6.0099 -2.8720 14 6 6.7035 6.6524 -4.2601 15 6 6.1328 8.0451 -4.1860 16 1 5.7763 8.4332 -3.2432 17 6 6.0649 8.8237 -5.3219 18 7 6.4986 8.3509 -6.4699 19 14 5.3569 10.5499 -5.2302 20 1 6.1607 11.3649 -4.2842 21 1 5.3966 11.1734 -6.5774 22 1 3.9512 10.4838 -4.7560 23 6 7.3547 4.6458 -2.9210 24 6 7.3425 4.0211 -1.5223 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6769 1.9562 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 3.8710 0.9160 0.7805 33 1 4.8091 2.7334 2.0090 34 1 4.4286 4.3739 1.4326 35 1 3.1145 3.2656 1.8943 36 1 4.1391 4.9969 -0.7567 37 1 5.5988 5.9206 -0.3165 38 1 4.6971 5.1668 -3.1350 39 1 4.7082 6.7992 -2.4240 40 1 7.1784 6.6534 -2.1591 41 1 7.7354 6.7005 -4.6079 42 1 6.1136 6.0544 -4.9546 43 1 6.4512 8.8988 -7.2690 44 1 8.3848 4.7722 -3.2541 45 1 6.8253 3.9935 -3.6155 46 1 7.9481 4.6253 -0.8470 47 1 7.7455 3.0093 -1.5682 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578772315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:00 Heat of formation + Delta-G solvation = -61.831160 kcal Electronic energy + Delta-G solvation = -22887.542202 eV Core-core repulsion = 19683.026887 eV Total energy + Delta-G solvation = -3204.515315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17545 -37.70884 -36.66528 -34.11944 -33.69497 -32.11441 -30.85931 -29.66387 -27.98963 -25.72123 -24.85811 -23.43735 -22.73074 -21.66540 -21.39400 -19.67529 -18.58301 -17.18130 -16.30348 -16.10387 -15.79616 -15.15718 -14.80740 -14.55156 -14.53234 -13.88101 -13.64239 -13.60631 -13.29399 -13.15237 -12.80002 -12.70991 -12.38088 -12.34516 -12.20797 -11.85521 -11.75450 -11.57080 -11.29704 -11.18110 -10.99049 -10.97415 -10.77903 -10.68229 -10.45773 -10.12134 -9.72473 -9.50341 -9.24996 -8.97785 -8.54124 -8.36369 -8.28636 -6.00539 -4.02811 2.80175 3.09577 3.30768 3.36259 3.37379 3.98954 4.44002 4.53721 4.67314 4.75575 4.82918 4.88556 5.06044 5.15887 5.21173 5.33453 5.34445 5.40489 5.45822 5.46875 5.50032 5.51454 5.57899 5.67176 5.74349 5.76310 5.83277 5.92860 6.00189 6.01960 6.10053 6.39666 6.40301 6.52917 6.65393 6.80438 6.97722 7.00227 7.11121 7.17427 7.64614 7.66588 7.81664 7.99328 8.40708 8.41353 9.03585 9.60873 11.10705 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019753 B = 0.003441 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.197701 B = 8135.025558 C = 8814.505958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.058 3.942 4 N -0.669 5.669 5 C 0.066 3.934 6 H 0.102 0.898 7 C -0.177 4.177 8 C 0.522 3.478 9 O -0.536 6.536 10 N -0.607 5.607 11 C 0.103 3.897 12 C -0.120 4.120 13 C -0.080 4.080 14 C 0.028 3.972 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.129 4.129 24 C 0.113 3.887 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.347 0.653 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.261 0.739 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 -11.471 15.849 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.071 4.071 4 N -0.301 5.301 5 C -0.047 4.047 6 H 0.120 0.880 7 C -0.236 4.236 8 C 0.309 3.691 9 O -0.412 6.412 10 N -0.341 5.341 11 C -0.020 4.020 12 C -0.158 4.158 13 C -0.098 4.098 14 C -0.009 4.009 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.167 4.167 24 C -0.009 4.009 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.858 -12.060 14.921 20.732 hybrid contribution -0.593 1.470 0.761 1.758 sum -8.451 -10.590 15.681 20.724 Atomic orbital electron populations 1.21729 0.95499 1.01791 1.01851 1.21493 0.95532 0.96253 1.02793 1.22074 0.87038 0.97321 1.00621 1.60132 1.07012 1.11841 1.51079 1.21501 0.95018 0.91524 0.96672 0.88012 1.22401 1.02664 1.02768 0.95777 1.20392 0.87731 0.83047 0.77958 1.90644 1.62849 1.31510 1.56192 1.48150 1.14166 1.08610 1.63178 1.21974 0.94977 0.85435 0.99585 1.21908 0.98960 1.01276 0.93632 1.21179 0.93631 0.93942 1.01086 1.19119 0.97150 0.94885 0.89773 1.21198 1.40703 0.99294 0.94349 0.92674 1.25026 0.95662 0.98187 0.95590 1.69955 1.47064 1.37106 0.99316 0.86708 0.79619 0.84876 0.77074 1.20315 1.21367 1.20285 1.22016 1.01461 0.98042 0.95201 1.21634 0.81547 1.01953 0.95755 0.92900 0.92500 0.92531 0.90896 0.92168 0.95203 0.90830 0.83342 0.91779 0.91020 0.91621 0.90680 0.91576 0.92253 0.89743 0.92398 0.96606 0.96642 0.92976 0.91223 0.92057 0.92008 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.99 6.19 -26.73 -0.17 -1.15 16 3 C 0.06 0.52 5.48 -3.82 -0.02 0.50 16 4 N -0.67 -7.54 5.80 -107.95 -0.63 -8.16 16 5 C 0.07 0.75 2.15 -68.86 -0.15 0.61 16 6 H 0.10 1.10 6.10 -51.93 -0.32 0.79 16 7 C -0.18 -1.57 9.01 37.16 0.33 -1.24 16 8 C 0.52 7.88 6.95 -10.98 -0.08 7.80 16 9 O -0.54 -9.92 15.95 5.56 0.09 -9.83 16 10 N -0.61 -8.91 2.97 -172.77 -0.51 -9.42 16 11 C 0.10 1.37 5.60 -3.71 -0.02 1.35 16 12 C -0.12 -2.04 5.19 -26.61 -0.14 -2.18 16 13 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 14 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 15 C -0.52 -13.93 8.39 -34.44 -0.29 -14.22 16 16 H 0.06 1.42 7.06 -52.48 -0.37 1.05 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.13 -2.22 5.36 -26.61 -0.14 -2.36 16 24 C 0.11 1.73 6.44 -3.71 -0.02 1.70 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.03 0.23 7.38 -51.93 -0.38 -0.15 16 31 H 0.07 0.69 8.05 -51.93 -0.42 0.28 16 32 H 0.35 3.70 8.48 -39.29 -0.33 3.37 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.61 7.26 -51.93 -0.38 0.23 16 35 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 36 H 0.07 0.82 5.28 -51.93 -0.27 0.55 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 39 H 0.08 1.51 6.91 -51.93 -0.36 1.15 16 40 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.08 1.35 7.00 -51.93 -0.36 0.98 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -31.32 364.74 -9.20 -40.52 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.63 Total: 0.63 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -0.73 Total: -9.51 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.40 Total: -43.43 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.32 -9.20 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578772315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.310 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds