Wall clock time and date at job start Tue Mar 31 2020 06:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47082 * 2 1 4 4 H 1.09000 * 109.47460 * 304.96894 * 3 2 1 5 5 C 1.50700 * 109.47039 * 184.96583 * 3 2 1 6 6 H 1.08001 * 120.00098 * 274.09362 * 5 3 2 7 7 C 1.37877 * 120.00006 * 94.37003 * 5 3 2 8 8 N 1.31512 * 120.00206 * 188.51139 * 7 5 3 9 9 Si 1.86798 * 119.99939 * 8.51060 * 7 5 3 10 10 H 1.48506 * 109.47285 * 85.39321 * 9 7 5 11 11 H 1.48499 * 109.47326 * 205.39503 * 9 7 5 12 12 H 1.48500 * 109.47309 * 325.39349 * 9 7 5 13 13 N 1.46903 * 109.47007 * 64.96595 * 3 2 1 14 14 C 1.46896 * 110.99842 * 249.49696 * 13 3 2 15 15 C 1.50702 * 109.46836 * 183.57985 * 14 13 3 16 16 O 1.21275 * 120.00514 * 4.71269 * 15 14 13 17 17 N 1.34782 * 119.99921 * 184.71186 * 15 14 13 18 18 C 1.46498 * 120.00063 * 185.01605 * 17 15 14 19 19 C 1.52998 * 109.46949 * 83.04552 * 18 17 15 20 20 C 1.53002 * 109.47270 * 65.26129 * 19 18 17 21 21 C 1.52996 * 109.47084 * 185.25588 * 19 18 17 22 22 C 1.46500 * 119.99642 * 5.01882 * 17 15 14 23 23 C 1.53006 * 117.49239 * 182.48272 * 22 17 15 24 24 C 1.53002 * 117.49852 * 113.86175 * 22 17 15 25 25 H 1.09002 * 109.47218 * 56.64614 * 1 2 3 26 26 H 1.09002 * 109.47400 * 176.64558 * 1 2 3 27 27 H 1.08999 * 109.47532 * 296.64649 * 1 2 3 28 28 H 1.09002 * 109.47394 * 240.00192 * 2 1 3 29 29 H 1.09004 * 109.47421 * 119.99873 * 2 1 3 30 30 H 0.97003 * 120.00132 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99593 * 125.54663 * 13 3 2 32 32 H 1.08993 * 109.47732 * 303.57958 * 14 13 3 33 33 H 1.09004 * 109.47346 * 63.58476 * 14 13 3 34 34 H 1.09000 * 109.47150 * 203.04373 * 18 17 15 35 35 H 1.09001 * 109.47047 * 323.04877 * 18 17 15 36 36 H 1.08996 * 109.47414 * 305.26112 * 19 18 17 37 37 H 1.09004 * 109.47067 * 61.60558 * 20 19 18 38 38 H 1.08998 * 109.47269 * 181.61064 * 20 19 18 39 39 H 1.09005 * 109.46938 * 301.61172 * 20 19 18 40 40 H 1.09004 * 109.46986 * 60.00434 * 21 19 18 41 41 H 1.09002 * 109.47550 * 180.02562 * 21 19 18 42 42 H 1.08994 * 109.47702 * 300.00058 * 21 19 18 43 43 H 1.08998 * 115.55340 * 328.18814 * 22 17 15 44 44 H 1.09000 * 117.50579 * 359.97438 * 23 22 17 45 45 H 1.09002 * 117.49686 * 145.02491 * 23 22 17 46 46 H 1.08996 * 117.49944 * 214.97151 * 24 22 17 47 47 H 1.09003 * 117.50081 * 359.97438 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6058 1.9814 -0.8421 5 6 3.5419 1.4443 -0.1230 6 1 4.1562 1.3512 0.7604 7 6 4.1319 1.5704 -1.3627 8 7 5.4301 1.4049 -1.4931 9 14 3.0874 1.9762 -2.8573 10 1 2.9156 3.4479 -2.9563 11 1 3.7592 1.4727 -4.0822 12 1 1.7570 1.3306 -2.7215 13 7 1.6506 2.0995 1.2549 14 6 0.6286 3.1273 1.0160 15 6 0.3190 3.8378 2.3084 16 8 0.9526 3.5791 3.3096 17 7 -0.6622 4.7608 2.3517 18 6 -0.8909 5.5299 3.5774 19 6 0.0801 6.7112 3.6268 20 6 -0.2350 7.6785 2.4840 21 6 -0.0681 7.4376 4.9651 22 6 -1.5001 4.9948 1.1730 23 6 -2.5585 6.0959 1.2661 24 6 -2.9814 4.6255 1.2746 25 1 -0.3634 0.5650 -0.8584 26 1 -0.3634 -1.0259 -0.0601 27 1 -0.3634 0.4609 0.9185 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.8451 1.4933 -2.3654 31 1 2.4545 2.4908 1.7227 32 1 1.0001 3.8464 0.2860 33 1 -0.2775 2.6568 0.6339 34 1 -1.9156 5.9012 3.5876 35 1 -0.7279 4.8892 4.4441 36 1 1.1019 6.3463 3.5226 37 1 -1.2469 8.0654 2.6041 38 1 0.4748 8.5056 2.5019 39 1 -0.1573 7.1536 1.5318 40 1 0.1565 6.7485 5.7793 41 1 0.6234 8.2795 5.0002 42 1 -1.0898 7.8026 5.0693 43 1 -1.0096 4.8478 0.2108 44 1 -2.6316 6.6458 2.2044 45 1 -2.7644 6.6735 0.3649 46 1 -3.4655 4.2359 0.3791 47 1 -3.3325 4.2079 2.2183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578903869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:39 Heat of formation + Delta-G solvation = -18.993573 kcal Electronic energy + Delta-G solvation = -23530.891717 eV Core-core repulsion = 20328.233979 eV Total energy + Delta-G solvation = -3202.657738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19851 -37.67561 -36.18714 -35.60415 -32.72875 -32.33039 -31.42567 -28.37139 -27.32314 -26.70909 -24.34411 -22.73480 -22.51743 -22.26081 -20.63886 -19.58500 -18.57839 -17.47287 -16.82726 -16.35206 -15.76468 -15.02069 -14.76200 -14.63713 -14.11472 -14.05010 -13.89179 -13.25884 -13.04928 -12.83507 -12.69046 -12.42895 -12.24494 -12.16964 -11.89526 -11.72662 -11.64603 -11.54415 -11.40204 -11.26703 -10.92513 -10.87743 -10.74532 -10.63174 -10.58597 -10.33584 -9.88320 -9.76955 -9.38245 -9.08068 -8.54536 -8.45788 -7.37769 -6.14606 -4.14626 2.85138 2.92277 3.20550 3.30496 3.31436 3.63279 4.34482 4.46299 4.60183 4.64225 4.72474 4.82571 4.93162 4.99481 5.14703 5.24853 5.34754 5.42110 5.45536 5.53401 5.59841 5.65476 5.68704 5.77106 5.80738 5.84694 5.86566 5.88493 5.99416 6.08822 6.10717 6.16145 6.22001 6.27268 6.57887 6.59042 6.77192 7.06701 7.08475 7.44506 7.45271 7.61405 7.93796 8.38391 8.45445 8.64789 8.95346 9.49315 10.98521 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.004649 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.967799 B = 6020.783663 C = 6297.841191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C 0.184 3.816 4 H 0.017 0.983 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.871 3.129 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.262 1.262 13 N -0.670 5.670 14 C 0.044 3.956 15 C 0.521 3.479 16 O -0.519 6.519 17 N -0.593 5.593 18 C 0.119 3.881 19 C -0.114 4.114 20 C -0.145 4.145 21 C -0.143 4.143 22 C 0.074 3.926 23 C -0.185 4.185 24 C -0.194 4.194 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.265 0.735 31 H 0.351 0.649 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.129 0.871 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.809 11.785 5.317 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C 0.076 3.924 4 H 0.035 0.965 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.127 4.127 8 N -0.530 5.530 9 Si 0.698 3.302 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.186 1.186 13 N -0.304 5.304 14 C -0.089 4.089 15 C 0.310 3.690 16 O -0.393 6.393 17 N -0.326 5.326 18 C -0.004 4.004 19 C -0.133 4.133 20 C -0.202 4.202 21 C -0.201 4.201 22 C -0.031 4.031 23 C -0.222 4.222 24 C -0.233 4.233 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.171 0.829 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.147 0.853 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.716 11.126 5.912 21.740 hybrid contribution 0.005 0.999 -1.461 1.770 sum -17.711 12.125 4.451 21.921 Atomic orbital electron populations 1.21831 0.98628 0.99449 1.00541 1.21631 0.92580 0.99041 1.00735 1.19649 0.95271 0.91188 0.86293 0.96477 1.21344 0.89555 1.51065 0.95044 0.90300 1.25032 0.94758 0.94375 0.98562 1.69925 1.10005 1.48683 1.24372 0.86941 0.81363 0.79000 0.82868 1.20360 1.21306 1.18643 1.60596 1.15446 1.28781 1.25580 1.21943 0.99269 0.94823 0.92867 1.20965 0.78563 0.78132 0.91350 1.90677 1.49275 1.63086 1.36262 1.47480 1.33879 1.38902 1.12346 1.21496 0.98733 0.92698 0.87438 1.21494 1.00850 0.95506 0.95500 1.21910 1.00848 0.98760 0.98698 1.21753 1.01447 1.00255 0.96623 1.21727 0.87060 1.03951 0.90364 1.23465 1.02594 0.92108 1.04081 1.23456 0.98126 0.97740 1.03928 0.94564 0.94615 0.92709 0.93245 0.92387 0.92556 0.82883 0.93185 0.89182 0.90641 0.90197 0.90543 0.92918 0.93061 0.92153 0.92452 0.92503 0.92882 0.85329 0.87861 0.87929 0.88006 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.18 37.16 0.34 -2.31 16 2 C -0.10 -2.20 5.59 -26.73 -0.15 -2.35 16 3 C 0.18 4.29 1.89 -68.86 -0.13 4.16 16 4 H 0.02 0.40 4.55 -51.93 -0.24 0.17 16 5 C -0.53 -14.73 8.69 -34.44 -0.30 -15.03 16 6 H 0.08 2.41 8.01 -52.49 -0.42 1.99 16 7 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.89 -26.94 13.96 55.43 0.77 -26.16 16 9 Si 0.87 20.92 27.11 -169.99 -4.61 16.31 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.26 -5.99 6.67 56.52 0.38 -5.61 16 13 N -0.67 -14.33 5.68 -109.22 -0.62 -14.95 16 14 C 0.04 0.77 4.19 -4.98 -0.02 0.75 16 15 C 0.52 8.78 7.64 -10.98 -0.08 8.69 16 16 O -0.52 -10.56 15.74 5.56 0.09 -10.47 16 17 N -0.59 -7.57 2.52 -166.10 -0.42 -7.99 16 18 C 0.12 1.34 4.53 -4.04 -0.02 1.32 16 19 C -0.11 -1.24 3.07 -90.62 -0.28 -1.51 16 20 C -0.14 -1.37 7.80 37.16 0.29 -1.08 16 21 C -0.14 -1.28 9.19 37.16 0.34 -0.94 16 22 C 0.07 0.75 4.70 -67.93 -0.32 0.43 16 23 C -0.19 -1.40 8.19 -26.72 -0.22 -1.62 16 24 C -0.19 -1.63 10.38 -26.73 -0.28 -1.91 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.97 7.19 -51.93 -0.37 0.60 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.35 8.15 7.55 -39.29 -0.30 7.86 16 32 H 0.05 0.87 7.88 -51.93 -0.41 0.46 16 33 H 0.09 1.44 6.84 -51.93 -0.36 1.08 16 34 H 0.08 0.68 5.81 -51.93 -0.30 0.38 16 35 H 0.08 1.03 7.57 -51.93 -0.39 0.64 16 36 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 37 H 0.05 0.41 6.98 -51.93 -0.36 0.05 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.63 6.31 -51.93 -0.33 0.30 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.13 1.30 7.13 -51.93 -0.37 0.93 16 44 H 0.10 0.75 4.73 -51.93 -0.25 0.50 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -30.97 362.97 -8.56 -39.53 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -8.32 Total: 7.62 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -0.92 Total: -9.35 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.27 Total: -49.10 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.61 Total: 16.31 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.97 -8.56 -39.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578903869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.534 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds