Wall clock time and date at job start Tue Mar 31 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47422 * 2 1 4 4 H 1.09002 * 109.47574 * 54.63112 * 3 2 1 5 5 C 1.50696 * 109.47215 * 174.63641 * 3 2 1 6 6 H 1.08006 * 119.99891 * 120.29744 * 5 3 2 7 7 C 1.37878 * 119.99956 * 300.29573 * 5 3 2 8 8 N 1.31513 * 120.00175 * 166.55388 * 7 5 3 9 9 Si 1.86796 * 119.99937 * 346.55517 * 7 5 3 10 10 H 1.48494 * 109.47414 * 264.19376 * 9 7 5 11 11 H 1.48500 * 109.47277 * 24.19642 * 9 7 5 12 12 H 1.48503 * 109.46942 * 144.19234 * 9 7 5 13 13 N 1.46905 * 109.46892 * 294.63670 * 3 2 1 14 14 C 1.46892 * 111.00170 * 101.64483 * 13 3 2 15 15 C 1.50706 * 109.47314 * 183.37479 * 14 13 3 16 16 O 1.21285 * 119.99377 * 5.00399 * 15 14 13 17 17 N 1.34774 * 120.00261 * 185.00142 * 15 14 13 18 18 C 1.46500 * 119.99925 * 185.03708 * 17 15 14 19 19 C 1.52992 * 109.47294 * 90.00391 * 18 17 15 20 20 C 1.52999 * 109.47295 * 175.00154 * 19 18 17 21 21 C 1.53003 * 109.46912 * 294.99726 * 19 18 17 22 22 C 1.46500 * 119.99719 * 5.03854 * 17 15 14 23 23 C 1.53002 * 117.49502 * 193.05475 * 22 17 15 24 24 C 1.53002 * 117.49631 * 124.40203 * 22 17 15 25 25 H 1.08995 * 109.47406 * 186.66456 * 1 2 3 26 26 H 1.08996 * 109.46713 * 306.66667 * 1 2 3 27 27 H 1.08996 * 109.46464 * 66.66234 * 1 2 3 28 28 H 1.08995 * 109.46896 * 239.99504 * 2 1 3 29 29 H 1.09001 * 109.46646 * 119.99827 * 2 1 3 30 30 H 0.96998 * 120.00140 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99783 * 225.59884 * 13 3 2 32 32 H 1.08998 * 109.47539 * 303.37859 * 14 13 3 33 33 H 1.09005 * 109.47482 * 63.37818 * 14 13 3 34 34 H 1.09004 * 109.47204 * 210.00401 * 18 17 15 35 35 H 1.09003 * 109.47034 * 329.99860 * 18 17 15 36 36 H 1.08997 * 109.47595 * 54.99582 * 19 18 17 37 37 H 1.08997 * 109.47386 * 59.99770 * 20 19 18 38 38 H 1.09001 * 109.47097 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.46798 * 299.99428 * 20 19 18 40 40 H 1.09002 * 109.47204 * 60.00065 * 21 19 18 41 41 H 1.09001 * 109.47079 * 179.97438 * 21 19 18 42 42 H 1.08997 * 109.47256 * 299.99917 * 21 19 18 43 43 H 1.08999 * 115.55192 * 338.72737 * 22 17 15 44 44 H 1.08997 * 117.50175 * 0.02562 * 23 22 17 45 45 H 1.09008 * 117.49417 * 145.01863 * 23 22 17 46 46 H 1.09005 * 117.49668 * 214.97858 * 24 22 17 47 47 H 1.09000 * 117.50190 * 359.96814 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6005 1.9833 0.8380 5 6 3.5412 1.4444 0.1328 6 1 4.1510 1.8916 -0.6384 7 6 4.1362 0.8754 1.2388 8 7 5.4296 0.6369 1.2402 9 14 3.1053 0.4432 2.7353 10 1 3.1810 1.5481 3.7245 11 1 1.6927 0.2442 2.3227 12 1 3.6225 -0.8065 3.3485 13 7 1.6590 2.0965 -1.2590 14 6 0.4947 2.9711 -1.0664 15 6 0.0830 3.5586 -2.3917 16 8 0.6402 3.2072 -3.4101 17 7 -0.9043 4.4745 -2.4454 18 6 -1.3799 4.9638 -3.7418 19 6 -2.5249 4.0761 -4.2331 20 6 -3.1039 4.6584 -5.5241 21 6 -1.9972 2.6653 -4.5019 22 6 -1.5018 4.9807 -1.2073 23 6 -2.8051 5.7736 -1.3246 24 6 -1.4976 6.4950 -0.9885 25 1 -0.3634 -1.0207 0.1193 26 1 -0.3632 0.6137 0.8243 27 1 -0.3632 0.4071 -0.9436 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8482 0.2370 2.0184 31 1 2.4355 2.6089 -1.6497 32 1 -0.3310 2.3915 -0.6537 33 1 0.7541 3.7751 -0.3775 34 1 -1.7349 5.9889 -3.6353 35 1 -0.5629 4.9354 -4.4628 36 1 -3.3041 4.0336 -3.4722 37 1 -2.3247 4.7007 -6.2851 38 1 -3.9194 4.0256 -5.8744 39 1 -3.4799 5.6634 -5.3326 40 1 -1.5847 2.2503 -3.5822 41 1 -2.8131 2.0327 -4.8515 42 1 -1.2180 2.7076 -5.2629 43 1 -1.3765 4.3452 -0.3306 44 1 -3.2182 5.9182 -2.3229 45 1 -3.5371 5.6598 -0.5249 46 1 -1.3699 6.8557 0.0321 47 1 -1.0498 7.1146 -1.7655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578903870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:42 Heat of formation + Delta-G solvation = -9.347020 kcal Electronic energy + Delta-G solvation = -23582.215164 eV Core-core repulsion = 20379.975732 eV Total energy + Delta-G solvation = -3202.239432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.22262 -37.59521 -36.34708 -35.62706 -32.71998 -32.37493 -31.36705 -28.47841 -27.18752 -26.75948 -24.35780 -22.74266 -22.47798 -22.26932 -20.37189 -19.74718 -18.90494 -17.47611 -16.71156 -16.18416 -15.74951 -15.29721 -14.93681 -14.59155 -14.06962 -13.91541 -13.77590 -13.42399 -13.02987 -12.82974 -12.65947 -12.32027 -12.25378 -12.13278 -12.00553 -11.70592 -11.67232 -11.61277 -11.37330 -10.96656 -10.93738 -10.89731 -10.84778 -10.70578 -10.65052 -10.44887 -9.89464 -9.40839 -9.17830 -9.06573 -8.47381 -8.42479 -7.44447 -6.12737 -4.09444 2.83735 2.90797 3.25559 3.36041 3.37954 3.66890 4.39094 4.45244 4.60405 4.65023 4.67514 4.85511 4.87696 5.01027 5.13748 5.29949 5.32169 5.37307 5.47892 5.55025 5.60094 5.66555 5.74700 5.79809 5.80863 5.82615 5.84679 5.86831 6.01069 6.03930 6.06003 6.20877 6.24816 6.43162 6.56386 6.63027 6.74640 7.00244 7.00903 7.42778 7.45712 7.62970 7.96213 8.32822 8.46762 8.59918 8.95539 9.51694 11.00189 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022673 B = 0.004301 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.644531 B = 6509.139993 C = 6847.280989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.194 3.806 4 H 0.003 0.997 5 C -0.533 4.533 6 H 0.076 0.924 7 C 0.077 3.923 8 N -0.891 5.891 9 Si 0.861 3.139 10 H -0.284 1.284 11 H -0.242 1.242 12 H -0.286 1.286 13 N -0.662 5.662 14 C 0.040 3.960 15 C 0.519 3.481 16 O -0.511 6.511 17 N -0.593 5.593 18 C 0.117 3.883 19 C -0.111 4.111 20 C -0.144 4.144 21 C -0.140 4.140 22 C 0.076 3.924 23 C -0.188 4.188 24 C -0.194 4.194 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.264 0.736 31 H 0.347 0.653 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.132 0.868 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.550 10.319 -5.760 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.085 3.915 4 H 0.021 0.979 5 C -0.571 4.571 6 H 0.094 0.906 7 C -0.126 4.126 8 N -0.528 5.528 9 Si 0.688 3.312 10 H -0.211 1.211 11 H -0.166 1.166 12 H -0.212 1.212 13 N -0.294 5.294 14 C -0.093 4.093 15 C 0.308 3.692 16 O -0.384 6.384 17 N -0.327 5.327 18 C -0.005 4.005 19 C -0.131 4.131 20 C -0.202 4.202 21 C -0.197 4.197 22 C -0.030 4.030 23 C -0.226 4.226 24 C -0.233 4.233 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.167 0.833 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.150 0.850 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.407 9.475 -6.456 22.540 hybrid contribution -0.086 0.569 1.513 1.619 sum -19.493 10.044 -4.942 22.478 Atomic orbital electron populations 1.21854 0.98712 0.99532 1.00372 1.21989 0.92734 0.99369 1.01116 1.19465 0.95586 0.90775 0.85626 0.97946 1.21244 0.89328 1.39377 1.07173 0.90560 1.24909 0.94766 0.94343 0.98560 1.69973 1.10573 1.42421 1.29795 0.87336 0.82699 0.78001 0.83169 1.21097 1.16617 1.21228 1.60306 1.07622 1.32449 1.29068 1.22001 0.98040 0.96493 0.92741 1.20925 0.78240 0.77867 0.92176 1.90693 1.52614 1.58762 1.36362 1.47499 1.37268 1.42852 1.05066 1.21494 0.97294 0.96657 0.85092 1.21537 0.97534 0.96482 0.97528 1.21777 1.00857 1.00374 0.97223 1.21790 1.00363 0.95029 1.02519 1.21740 0.98840 0.93136 0.89253 1.23390 0.91367 1.04226 1.03604 1.23423 1.00880 0.95678 1.03324 0.94546 0.94432 0.92821 0.92046 0.92801 0.92636 0.83316 0.88721 0.93355 0.91086 0.89666 0.91166 0.92448 0.92496 0.92909 0.92450 0.93530 0.92172 0.85004 0.88177 0.87987 0.87951 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.65 37.16 0.32 -2.37 16 2 C -0.11 -2.52 4.73 -26.73 -0.13 -2.65 16 3 C 0.19 4.51 1.76 -68.87 -0.12 4.39 16 4 H 0.00 0.07 6.67 -51.93 -0.35 -0.28 16 5 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 6 H 0.08 2.31 7.65 -52.48 -0.40 1.91 16 7 C 0.08 2.20 5.35 -17.82 -0.10 2.10 16 8 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 9 Si 0.86 20.69 25.67 -169.99 -4.36 16.33 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.24 -5.40 5.16 56.52 0.29 -5.10 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 N -0.66 -13.94 5.65 -109.22 -0.62 -14.56 16 14 C 0.04 0.68 3.99 -4.98 -0.02 0.66 16 15 C 0.52 8.40 6.11 -10.98 -0.07 8.33 16 16 O -0.51 -9.96 14.54 5.55 0.08 -9.88 16 17 N -0.59 -7.36 2.71 -166.11 -0.45 -7.81 16 18 C 0.12 1.28 4.26 -4.05 -0.02 1.27 16 19 C -0.11 -1.12 2.90 -90.62 -0.26 -1.38 16 20 C -0.14 -1.17 9.19 37.16 0.34 -0.83 16 21 C -0.14 -1.75 8.03 37.16 0.30 -1.45 16 22 C 0.08 0.75 6.01 -67.93 -0.41 0.35 16 23 C -0.19 -1.43 9.48 -26.70 -0.25 -1.68 16 24 C -0.19 -1.62 10.03 -26.70 -0.27 -1.89 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.05 0.95 6.88 -51.93 -0.36 0.60 16 28 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.05 1.24 4.10 -51.93 -0.21 1.03 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.35 7.81 7.79 -39.29 -0.31 7.50 16 32 H 0.09 1.49 5.91 -51.93 -0.31 1.18 16 33 H 0.05 0.78 7.75 -51.93 -0.40 0.37 16 34 H 0.07 0.64 6.26 -51.93 -0.32 0.31 16 35 H 0.08 1.10 7.36 -51.93 -0.38 0.72 16 36 H 0.07 0.68 7.36 -51.93 -0.38 0.30 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.85 6.16 -51.93 -0.32 0.54 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 43 H 0.13 1.27 6.76 -51.93 -0.35 0.92 16 44 H 0.10 0.73 5.94 -51.93 -0.31 0.42 16 45 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.10 0.83 7.86 -51.93 -0.41 0.43 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -31.04 355.56 -8.49 -39.53 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -8.28 Total: 7.54 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -0.99 Total: -10.28 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.29 Total: -48.60 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.36 Total: 16.33 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.04 -8.49 -39.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578903870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.179 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds