Wall clock time and date at job start Tue Mar 31 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47218 * 2 1 4 4 H 1.08997 * 109.47412 * 305.13892 * 3 2 1 5 5 C 1.50703 * 109.47525 * 185.13657 * 3 2 1 6 6 H 1.07999 * 120.00206 * 240.00651 * 5 3 2 7 7 C 1.37878 * 119.99727 * 59.99695 * 5 3 2 8 8 N 1.31521 * 120.00012 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99979 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46666 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46492 * 120.00491 * 9 7 5 12 12 H 1.48497 * 109.47307 * 240.00569 * 9 7 5 13 13 N 1.46898 * 109.47081 * 65.13734 * 3 2 1 14 14 C 1.46894 * 111.00426 * 205.83371 * 13 3 2 15 15 C 1.50701 * 109.47546 * 174.76376 * 14 13 3 16 16 O 1.21290 * 119.99777 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00107 * 180.02562 * 15 14 13 18 18 C 1.46506 * 119.99753 * 180.02562 * 17 15 14 19 19 H 1.08993 * 109.47322 * 35.00055 * 18 17 15 20 20 C 1.53006 * 109.46975 * 275.00071 * 18 17 15 21 21 C 1.52994 * 109.46907 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.47350 * 60.00158 * 21 20 18 23 23 C 1.52998 * 109.46953 * 300.00010 * 22 21 20 24 24 C 1.52998 * 109.46935 * 155.00141 * 18 17 15 25 25 H 1.09007 * 109.47209 * 59.99938 * 24 18 17 26 26 C 1.52998 * 109.47197 * 299.99990 * 24 18 17 27 27 H 1.09000 * 109.46970 * 64.54065 * 1 2 3 28 28 H 1.08993 * 109.46858 * 184.54021 * 1 2 3 29 29 H 1.09002 * 109.46711 * 304.54120 * 1 2 3 30 30 H 1.09004 * 109.47129 * 240.00295 * 2 1 3 31 31 H 1.09000 * 109.47539 * 120.00444 * 2 1 3 32 32 H 0.97003 * 119.99858 * 179.97438 * 8 7 5 33 33 H 1.00907 * 111.00071 * 81.88113 * 13 3 2 34 34 H 1.08995 * 109.47727 * 294.77065 * 14 13 3 35 35 H 1.09005 * 109.46997 * 54.77142 * 14 13 3 36 36 H 0.96993 * 120.00378 * 0.02562 * 17 15 14 37 37 H 1.09002 * 109.46514 * 300.00305 * 20 18 17 38 38 H 1.08993 * 109.46898 * 60.00087 * 20 18 17 39 39 H 1.08993 * 109.47319 * 299.99940 * 21 20 18 40 40 H 1.09003 * 109.46632 * 179.97438 * 21 20 18 41 41 H 1.08999 * 109.47686 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.47110 * 59.99747 * 22 21 20 43 43 H 1.09000 * 109.47259 * 299.99534 * 23 22 21 44 44 H 1.09006 * 109.47226 * 179.97438 * 23 22 21 45 45 H 1.08999 * 109.47100 * 59.99697 * 26 24 18 46 46 H 1.08997 * 109.47260 * 180.02562 * 26 24 18 47 47 H 1.09009 * 109.46690 * 299.99631 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6035 1.9822 -0.8403 5 6 3.5417 1.4445 -0.1272 6 1 4.1487 1.8884 0.6479 7 6 4.1406 0.8794 -1.2331 8 7 3.4013 0.3391 -2.1773 9 14 6.0019 0.8825 -1.3912 10 1 6.5983 1.5466 -0.2045 11 1 6.4937 -0.5162 -1.4747 12 1 6.3932 1.6190 -2.6199 13 7 1.6543 2.0982 1.2566 14 6 1.5558 3.5535 1.0825 15 6 1.0355 4.1774 2.3518 16 8 0.7730 3.4784 3.3077 17 7 0.8619 5.5119 2.4248 18 6 0.3565 6.1183 3.6590 19 1 0.7413 5.5686 4.5180 20 6 -1.1726 6.0667 3.6637 21 6 -1.7003 6.7005 4.9523 22 6 -1.2391 8.1573 5.0301 23 6 0.2900 8.2090 5.0254 24 6 0.8179 7.5750 3.7375 25 1 0.4331 8.1248 2.8784 26 6 2.3470 7.6267 3.7327 27 1 -0.3633 0.4418 -0.9279 28 1 -0.3633 -1.0244 0.0813 29 1 -0.3633 0.5827 0.8465 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8226 -0.0581 -2.9555 33 1 2.2977 1.8656 1.9983 34 1 2.5414 3.9599 0.8554 35 1 0.8733 3.7759 0.2622 36 1 1.0714 6.0708 1.6603 37 1 -1.5573 6.6164 2.8046 38 1 -1.5012 5.0289 3.6078 39 1 -1.3156 6.1512 5.8115 40 1 -2.7898 6.6641 4.9554 41 1 -1.6154 8.6091 5.9479 42 1 -1.6238 8.7067 4.1709 43 1 0.6748 7.6597 5.8846 44 1 0.6187 9.2468 5.0804 45 1 2.7229 7.1754 2.8145 46 1 2.6756 8.6644 3.7891 47 1 2.7317 7.0769 4.5918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581832695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:45 Heat of formation + Delta-G solvation = -72.674320 kcal Electronic energy + Delta-G solvation = -22956.218307 eV Core-core repulsion = 19751.232797 eV Total energy + Delta-G solvation = -3204.985510 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.98836 -38.17280 -35.87827 -34.02461 -32.60659 -32.42635 -31.09927 -29.73058 -27.26994 -26.34246 -24.79814 -22.81347 -22.17275 -21.38961 -20.32876 -19.71963 -19.44676 -16.92844 -16.42076 -16.23862 -15.08556 -14.76958 -14.73808 -14.57871 -14.25779 -14.03369 -13.67347 -13.38001 -13.06952 -12.94108 -12.60704 -12.47856 -12.09215 -11.92877 -11.88318 -11.64422 -11.34924 -11.19529 -11.15797 -11.07675 -10.89118 -10.73786 -10.65482 -10.60222 -10.31239 -10.15881 -9.71700 -9.55044 -9.20369 -9.01903 -8.80506 -8.39251 -7.24892 -6.01216 -4.14907 3.12057 3.24617 3.33528 3.36412 3.39537 4.37969 4.42498 4.51411 4.66773 4.88893 5.00466 5.18109 5.22489 5.25251 5.26133 5.30254 5.40800 5.53470 5.54154 5.56548 5.69877 5.81919 5.83761 5.94900 5.97031 5.99811 6.00110 6.10743 6.18101 6.20740 6.30150 6.44779 6.58109 6.72494 6.76932 7.12077 7.24390 7.43622 7.57430 7.75086 7.80625 8.09327 8.12748 8.31310 8.61233 8.70776 8.98483 9.53049 10.98437 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023111 B = 0.003615 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.266203 B = 7743.791308 C = 8676.338565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.672 5.672 14 C 0.050 3.950 15 C 0.513 3.487 16 O -0.528 6.528 17 N -0.736 5.736 18 C 0.153 3.847 19 H 0.084 0.916 20 C -0.130 4.130 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.111 4.111 24 C -0.098 4.098 25 H 0.073 0.927 26 C -0.148 4.148 27 H 0.034 0.966 28 H 0.025 0.975 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.337 0.663 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.396 0.604 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.006 16.391 10.107 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.586 4.586 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.302 5.302 14 C -0.083 4.083 15 C 0.300 3.700 16 O -0.403 6.403 17 N -0.389 5.389 18 C 0.048 3.952 19 H 0.103 0.897 20 C -0.169 4.169 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.149 4.149 24 C -0.117 4.117 25 H 0.092 0.908 26 C -0.205 4.205 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.154 0.846 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.230 0.770 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.852 15.640 10.523 20.421 hybrid contribution 2.117 0.512 -0.714 2.292 sum -5.736 16.153 9.809 19.749 Atomic orbital electron populations 1.21721 0.98978 0.98608 1.00373 1.21478 0.92186 0.98978 1.01703 1.19187 0.92867 0.91482 0.85679 0.94964 1.21917 0.92738 1.38467 1.05525 0.92776 1.24935 0.97956 0.94905 0.95688 1.69895 1.34730 1.38200 1.09361 0.86594 0.86009 0.77822 0.77890 1.19928 1.20912 1.21044 1.60614 1.55915 1.03527 1.10180 1.21656 1.00283 0.92667 0.93708 1.21199 0.76887 0.81359 0.90550 1.90651 1.49665 1.61313 1.38642 1.46144 1.68754 1.07849 1.16202 1.20887 0.93251 0.92638 0.88416 0.89747 1.21932 0.95500 1.01690 0.97756 1.21494 1.00347 0.95597 0.98059 1.21569 0.95660 0.96891 1.01711 1.21547 0.95520 1.00563 0.97268 1.21388 0.96179 0.95240 0.98881 0.90835 1.21829 0.94708 1.01465 1.02520 0.94640 0.95614 0.92962 0.89126 0.94982 0.92901 0.84619 0.92657 0.89316 0.76986 0.92013 0.91175 0.91797 0.91914 0.92030 0.92006 0.91703 0.91710 0.92210 0.92701 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.85 37.16 0.37 -2.62 16 2 C -0.10 -2.56 5.45 -26.73 -0.15 -2.71 16 3 C 0.22 5.32 1.97 -68.86 -0.14 5.18 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.55 -14.59 8.47 -34.44 -0.29 -14.88 16 6 H 0.05 1.44 7.73 -52.49 -0.41 1.04 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.66 11.29 55.43 0.63 -24.03 16 9 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.67 -14.67 5.17 -109.22 -0.56 -15.24 16 14 C 0.05 0.91 5.99 -4.98 -0.03 0.88 16 15 C 0.51 8.67 7.85 -10.99 -0.09 8.58 16 16 O -0.53 -10.84 15.98 5.55 0.09 -10.75 16 17 N -0.74 -9.23 4.38 -53.80 -0.24 -9.47 16 18 C 0.15 1.74 1.90 -67.92 -0.13 1.61 16 19 H 0.08 1.16 7.58 -51.93 -0.39 0.77 16 20 C -0.13 -1.43 5.50 -26.73 -0.15 -1.57 16 21 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 22 C -0.12 -0.91 5.92 -26.73 -0.16 -1.06 16 23 C -0.11 -0.85 5.20 -26.76 -0.14 -0.99 16 24 C -0.10 -0.85 2.29 -90.65 -0.21 -1.06 16 25 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 26 C -0.15 -1.31 9.04 37.16 0.34 -0.98 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.12 7.64 -51.93 -0.40 0.72 16 30 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.34 7.65 8.29 -39.29 -0.33 7.32 16 34 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 35 H 0.09 1.54 7.92 -51.93 -0.41 1.13 16 36 H 0.40 4.03 8.39 -40.82 -0.34 3.69 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.56 7.44 -51.93 -0.39 0.18 16 46 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 367.39 15.07 5.54 5.54 Total: -1.00 -29.46 367.39 -9.44 -38.90 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -8.85 Total: 8.28 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.02 Total: -9.09 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.17 Total: -48.74 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.46 -9.44 -38.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581832695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.776 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds