Wall clock time and date at job start Tue Mar 31 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 H 1.09000 * 109.47174 * 177.94404 * 3 2 1 5 5 C 1.50703 * 109.47013 * 57.94548 * 3 2 1 6 6 H 1.07999 * 120.00094 * 239.99779 * 5 3 2 7 7 C 1.37872 * 120.00053 * 60.00049 * 5 3 2 8 8 N 1.31516 * 120.00305 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00061 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46910 * 60.00359 * 9 7 5 11 11 H 1.48502 * 109.47228 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47546 * 299.99905 * 9 7 5 13 13 N 1.46898 * 109.47518 * 297.94662 * 3 2 1 14 14 C 1.46906 * 110.99751 * 273.83539 * 13 3 2 15 15 C 1.50703 * 109.46924 * 174.45720 * 14 13 3 16 16 O 1.21285 * 119.99962 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00099 * 180.02562 * 15 14 13 18 18 C 1.46496 * 120.00311 * 179.97438 * 17 15 14 19 19 H 1.08994 * 109.47176 * 324.99790 * 18 17 15 20 20 C 1.53007 * 109.46968 * 84.99892 * 18 17 15 21 21 C 1.52996 * 109.47121 * 180.02562 * 20 18 17 22 22 C 1.52996 * 109.47177 * 299.99861 * 21 20 18 23 23 C 1.53004 * 109.47219 * 59.99763 * 22 21 20 24 24 C 1.52996 * 109.47239 * 300.00198 * 23 22 21 25 25 H 1.08994 * 109.47283 * 299.99897 * 24 23 22 26 26 C 1.52999 * 109.46908 * 179.97438 * 24 23 22 27 27 H 1.08999 * 109.47894 * 294.46927 * 1 2 3 28 28 H 1.09007 * 109.46992 * 54.46657 * 1 2 3 29 29 H 1.09003 * 109.47164 * 174.46003 * 1 2 3 30 30 H 1.08998 * 109.47566 * 239.99985 * 2 1 3 31 31 H 1.08999 * 109.47098 * 119.99897 * 2 1 3 32 32 H 0.96993 * 120.00412 * 179.97438 * 8 7 5 33 33 H 1.00897 * 111.00827 * 149.87559 * 13 3 2 34 34 H 1.08999 * 109.47117 * 54.45626 * 14 13 3 35 35 H 1.08997 * 109.46616 * 294.44988 * 14 13 3 36 36 H 0.97007 * 119.99765 * 359.97438 * 17 15 14 37 37 H 1.08994 * 109.47255 * 59.99946 * 20 18 17 38 38 H 1.09000 * 109.46812 * 300.00086 * 20 18 17 39 39 H 1.08998 * 109.47211 * 179.97438 * 21 20 18 40 40 H 1.09004 * 109.47222 * 59.99830 * 21 20 18 41 41 H 1.09004 * 109.47020 * 300.00093 * 22 21 20 42 42 H 1.09003 * 109.47195 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.46855 * 60.00229 * 23 22 21 44 44 H 1.09000 * 109.47050 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47363 * 60.00490 * 26 24 23 46 46 H 1.09008 * 109.46631 * 180.02562 * 26 24 23 47 47 H 1.08994 * 109.47370 * 300.00218 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1293 1.4428 0.0369 5 6 1.4964 2.1675 1.2042 6 1 0.8794 3.0442 1.0738 7 6 1.7869 1.7115 2.4725 8 7 2.5379 0.6436 2.6315 9 14 1.1137 2.6105 3.9652 10 1 -0.3704 2.6106 3.9152 11 1 1.5667 1.9247 5.2020 12 1 1.6092 4.0103 3.9651 13 7 1.5912 2.1206 -1.2234 14 6 2.5278 1.8839 -2.3302 15 6 1.9685 2.4778 -3.5973 16 8 0.8951 3.0422 -3.5802 17 7 2.6605 2.3808 -4.7497 18 6 2.1166 2.9576 -5.9816 19 1 1.0318 2.8520 -5.9841 20 6 2.4847 4.4409 -6.0561 21 6 1.9161 5.0434 -7.3424 22 6 2.5021 4.3112 -8.5511 23 6 2.1340 2.8279 -8.4766 24 6 2.7027 2.2253 -7.1904 25 1 3.7875 2.3310 -7.1883 26 6 2.3340 0.7423 -7.1156 27 1 -0.3635 0.4256 0.9353 28 1 -0.3633 0.5973 -0.8363 29 1 -0.3633 -1.0229 -0.0992 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.7425 0.3230 3.5238 33 1 1.4631 3.1085 -1.0632 34 1 2.6695 0.8114 -2.4632 35 1 3.4856 2.3514 -2.1018 36 1 3.5189 1.9291 -4.7635 37 1 3.5695 4.5465 -6.0536 38 1 2.0669 4.9626 -5.1952 39 1 2.1780 6.1002 -7.3953 40 1 0.8312 4.9378 -7.3445 41 1 3.5870 4.4168 -8.5491 42 1 2.0973 4.7408 -9.4675 43 1 1.0491 2.7223 -8.4787 44 1 2.5519 2.3062 -9.3375 45 1 2.7512 0.2203 -7.9767 46 1 2.7388 0.3131 -6.1990 47 1 1.2492 0.6370 -7.1175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581832697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:51 Heat of formation + Delta-G solvation = -68.705604 kcal Electronic energy + Delta-G solvation = -22972.021881 eV Core-core repulsion = 19767.208467 eV Total energy + Delta-G solvation = -3204.813414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.02820 -38.21655 -35.96435 -34.06393 -32.63516 -32.52932 -30.72499 -29.73414 -27.25304 -26.32600 -24.69564 -23.11996 -22.50955 -21.43403 -20.36950 -19.80344 -18.94355 -17.10265 -16.30261 -15.94959 -15.29186 -14.85521 -14.70912 -14.59545 -14.27654 -13.86637 -13.75591 -13.41905 -13.06515 -12.98515 -12.70927 -12.58367 -12.11639 -12.06353 -11.80583 -11.72001 -11.41721 -11.30595 -11.10401 -10.89308 -10.78554 -10.76407 -10.63547 -10.37477 -10.33456 -10.07423 -9.84794 -9.36610 -9.23375 -8.84276 -8.77703 -8.44800 -7.21722 -6.00723 -4.05505 3.06763 3.33058 3.33710 3.37496 3.41878 4.39842 4.42722 4.49156 4.64219 4.86521 4.97817 5.15298 5.20936 5.23572 5.27503 5.29865 5.36775 5.45768 5.51364 5.53155 5.67687 5.79386 5.81485 5.89706 5.92497 5.93772 5.95835 5.97778 6.08354 6.16841 6.27259 6.54891 6.68078 6.74801 6.89275 7.26184 7.28273 7.51982 7.69742 7.77786 7.83248 7.86909 8.27201 8.39549 8.59891 8.69798 9.03407 9.59126 11.05481 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031905 B = 0.003252 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.387465 B = 8607.995653 C = 9063.449129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.101 4.101 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.668 5.668 14 C 0.044 3.956 15 C 0.514 3.486 16 O -0.523 6.523 17 N -0.736 5.736 18 C 0.152 3.848 19 H 0.086 0.914 20 C -0.130 4.130 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.111 4.111 24 C -0.098 4.098 25 H 0.073 0.927 26 C -0.148 4.148 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.012 0.988 30 H 0.008 0.992 31 H 0.086 0.914 32 H 0.261 0.739 33 H 0.339 0.661 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.396 0.604 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 2.924 -21.228 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.301 5.301 14 C -0.090 4.090 15 C 0.300 3.700 16 O -0.398 6.398 17 N -0.390 5.390 18 C 0.048 3.952 19 H 0.104 0.896 20 C -0.169 4.169 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.149 4.149 24 C -0.117 4.117 25 H 0.091 0.909 26 C -0.205 4.205 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.027 0.973 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.158 0.842 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.230 0.770 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.510 2.700 -21.208 21.526 hybrid contribution 0.928 0.712 1.114 1.615 sum 3.438 3.412 -20.094 20.670 Atomic orbital electron populations 1.21447 0.97388 0.97139 1.01794 1.21431 0.95273 0.98079 0.99184 1.19160 0.93237 0.91710 0.84927 0.98159 1.21148 1.31672 1.12039 0.90246 0.92202 1.24867 0.95067 0.95020 0.98829 1.69872 1.37454 1.23104 1.22486 0.86616 0.79536 0.79712 0.81901 1.20150 1.21377 1.20365 1.60386 1.46125 1.17215 1.06339 1.21786 0.95168 1.01234 0.90788 1.21077 0.84862 0.79143 0.84883 1.90667 1.21280 1.42148 1.85664 1.46139 1.24097 1.60236 1.08484 1.20900 0.99464 0.91866 0.83015 0.89636 1.21931 1.00876 0.95863 0.98196 1.21494 1.00712 0.99212 0.94096 1.21568 1.00856 0.95316 0.98088 1.21557 1.01221 0.95500 0.96627 1.21393 1.00481 0.95363 0.94416 0.90862 1.21828 1.01944 0.94959 1.01776 0.92923 0.93224 0.96907 0.97313 0.89589 0.92918 0.84249 0.89065 0.93622 0.77049 0.92031 0.91281 0.91912 0.91755 0.92022 0.92005 0.91659 0.91689 0.92695 0.92246 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 9.46 37.16 0.35 -2.46 16 2 C -0.10 -2.46 5.57 -26.73 -0.15 -2.61 16 3 C 0.22 5.39 2.30 -68.86 -0.16 5.23 16 4 H 0.00 0.02 7.84 -51.93 -0.41 -0.39 16 5 C -0.51 -13.91 7.33 -34.44 -0.25 -14.16 16 6 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 7 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -25.07 11.34 55.43 0.63 -24.44 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.67 -14.64 5.07 -109.21 -0.55 -15.20 16 14 C 0.04 0.76 5.94 -4.97 -0.03 0.73 16 15 C 0.51 8.48 7.85 -10.99 -0.09 8.40 16 16 O -0.52 -10.70 15.99 5.55 0.09 -10.61 16 17 N -0.74 -8.88 4.38 -53.81 -0.24 -9.12 16 18 C 0.15 1.69 1.90 -67.93 -0.13 1.56 16 19 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 20 C -0.13 -1.38 5.49 -26.73 -0.15 -1.53 16 21 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 22 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 23 C -0.11 -0.83 5.20 -26.73 -0.14 -0.96 16 24 C -0.10 -0.81 2.30 -90.62 -0.21 -1.02 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 C -0.15 -1.25 9.03 37.16 0.34 -0.92 16 27 H 0.05 1.32 7.37 -51.93 -0.38 0.93 16 28 H 0.05 1.16 7.50 -51.93 -0.39 0.77 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.01 0.19 7.42 -51.93 -0.39 -0.20 16 31 H 0.09 2.30 6.13 -51.93 -0.32 1.99 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 33 H 0.34 7.67 8.10 -39.29 -0.32 7.35 16 34 H 0.09 1.54 7.38 -51.93 -0.38 1.15 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 3.77 8.39 -40.82 -0.34 3.43 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.53 7.45 -51.92 -0.39 0.14 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -30.00 364.07 -9.37 -39.36 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -8.74 Total: 6.50 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.02 Total: -8.32 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.16 Total: -48.76 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.00 -9.37 -39.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581832697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.341 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds