Wall clock time and date at job start Tue Mar 31 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47081 * 2 1 4 4 H 1.09001 * 109.46924 * 182.26032 * 3 2 1 5 5 C 1.50701 * 109.47165 * 62.26239 * 3 2 1 6 6 H 1.08000 * 120.00079 * 244.38703 * 5 3 2 7 7 C 1.37874 * 119.99855 * 64.37637 * 5 3 2 8 8 N 1.31512 * 120.00467 * 7.49382 * 7 5 3 9 9 Si 1.86803 * 119.99849 * 187.49058 * 7 5 3 10 10 H 1.48501 * 109.47023 * 60.00385 * 9 7 5 11 11 H 1.48502 * 109.46937 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47430 * 299.99944 * 9 7 5 13 13 N 1.46898 * 109.47284 * 302.26309 * 3 2 1 14 14 C 1.46895 * 110.99911 * 273.82252 * 13 3 2 15 15 C 1.50702 * 109.47256 * 181.95962 * 14 13 3 16 16 O 1.21280 * 119.99664 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00102 * 180.02562 * 15 14 13 18 18 C 1.46506 * 119.99956 * 180.02562 * 17 15 14 19 19 H 1.08999 * 109.47219 * 34.99341 * 18 17 15 20 20 C 1.52999 * 109.46918 * 274.99808 * 18 17 15 21 21 C 1.53001 * 109.46730 * 299.99972 * 20 18 17 22 22 C 1.52997 * 109.47317 * 299.99887 * 21 20 18 23 23 C 1.52999 * 109.47129 * 60.00356 * 22 21 20 24 24 C 1.52994 * 109.46968 * 154.99394 * 18 17 15 25 25 H 1.09003 * 109.47013 * 179.97438 * 24 18 17 26 26 C 1.52999 * 109.47639 * 299.99973 * 24 18 17 27 27 H 1.09003 * 109.47392 * 62.66625 * 1 2 3 28 28 H 1.09003 * 109.47396 * 182.66107 * 1 2 3 29 29 H 1.09000 * 109.47703 * 302.66480 * 1 2 3 30 30 H 1.08996 * 109.47331 * 240.00398 * 2 1 3 31 31 H 1.08998 * 109.46910 * 120.00001 * 2 1 3 32 32 H 0.97003 * 119.99527 * 4.05730 * 8 7 5 33 33 H 1.00901 * 111.00574 * 149.86392 * 13 3 2 34 34 H 1.09005 * 109.47295 * 301.95363 * 14 13 3 35 35 H 1.08993 * 109.47575 * 61.95803 * 14 13 3 36 36 H 0.96998 * 119.99885 * 359.97438 * 17 15 14 37 37 H 1.08992 * 109.47348 * 59.99578 * 20 18 17 38 38 H 1.09003 * 109.47241 * 180.02562 * 20 18 17 39 39 H 1.09000 * 109.47501 * 59.99961 * 21 20 18 40 40 H 1.09005 * 109.46967 * 180.02562 * 21 20 18 41 41 H 1.08999 * 109.47430 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.47623 * 300.00408 * 22 21 20 43 43 H 1.09003 * 109.47241 * 59.99720 * 23 22 21 44 44 H 1.08997 * 109.47786 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.46826 * 59.99587 * 26 24 18 46 46 H 1.08992 * 109.47348 * 180.02562 * 26 24 18 47 47 H 1.08999 * 109.46794 * 300.00204 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1292 1.4428 -0.0405 5 6 1.5839 2.1366 1.2576 6 1 0.9029 2.9726 1.1964 7 6 2.0359 1.7041 2.4862 8 7 2.9751 0.7861 2.5556 9 14 1.3144 2.4223 4.0525 10 1 -0.1457 2.1547 4.0929 11 1 1.9659 1.7952 5.2304 12 1 1.5500 3.8882 4.0793 13 7 1.5062 2.1506 -1.1711 14 6 2.3617 1.9429 -2.3470 15 6 1.8101 2.7214 -3.5135 16 8 0.8031 3.3837 -3.3786 17 7 2.4353 2.6808 -4.7068 18 6 1.8993 3.4382 -5.8407 19 1 1.4650 4.3712 -5.4817 20 6 0.8208 2.6105 -6.5426 21 6 1.4304 1.3008 -7.0465 22 6 2.5587 1.6096 -8.0326 23 6 3.6372 2.4372 -7.3307 24 6 3.0276 3.7470 -6.8267 25 1 2.6288 4.3100 -7.6705 26 6 4.1062 4.5746 -6.1248 27 1 -0.3634 0.4719 -0.9129 28 1 -0.3634 -1.0266 0.0477 29 1 -0.3634 0.5546 0.8651 30 1 1.8933 -0.5137 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 3.3912 0.4558 1.7440 33 1 1.3904 3.1341 -0.9774 34 1 3.3724 2.2865 -2.1263 35 1 2.3850 0.8822 -2.5966 36 1 3.2404 2.1508 -4.8147 37 1 0.0170 2.3905 -5.8401 38 1 0.4223 3.1737 -7.3865 39 1 1.8292 0.7374 -6.2029 40 1 0.6622 0.7113 -7.5470 41 1 2.9928 0.6765 -8.3919 42 1 2.1600 2.1730 -8.8762 43 1 4.0360 1.8738 -6.4870 44 1 4.4409 2.6576 -8.0332 45 1 4.5048 4.0112 -5.2812 46 1 4.9097 4.7950 -6.8273 47 1 3.6719 5.5077 -5.7658 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581832698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:55 Heat of formation + Delta-G solvation = -69.611649 kcal Electronic energy + Delta-G solvation = -23302.076811 eV Core-core repulsion = 20097.224108 eV Total energy + Delta-G solvation = -3204.852703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.31810 -38.23832 -36.21725 -33.64057 -32.73722 -32.65662 -30.81897 -30.08165 -27.22682 -26.28236 -24.36671 -23.38761 -22.69145 -21.64319 -20.68703 -19.26632 -19.09049 -17.57066 -16.39779 -15.91745 -15.52265 -15.18232 -14.73407 -14.32736 -14.17700 -13.85899 -13.69924 -13.50404 -13.30398 -13.12765 -12.89232 -12.42134 -12.16840 -12.09089 -11.91080 -11.79174 -11.67668 -11.54027 -11.14644 -11.10069 -10.77856 -10.77147 -10.52143 -10.20547 -10.14181 -10.07817 -9.99186 -9.69890 -9.39548 -8.90911 -8.50663 -8.30972 -7.37492 -6.35189 -4.05770 2.97904 3.30749 3.45877 3.48399 3.66222 4.37542 4.46387 4.51545 4.53838 4.84523 4.95843 5.06277 5.16341 5.23117 5.26736 5.28358 5.36410 5.38730 5.40511 5.55369 5.59982 5.71035 5.78335 5.80997 5.82315 5.85302 5.95705 6.02587 6.05619 6.15092 6.19017 6.31313 6.46038 6.63030 6.64355 6.95984 7.05603 7.26814 7.47956 7.58248 7.65092 7.89239 8.11221 8.48409 8.55661 8.60753 8.87185 9.64078 11.01609 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.003519 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.877421 B = 7954.793232 C = 8228.092053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C 0.204 3.796 4 H -0.008 1.008 5 C -0.594 4.594 6 H 0.055 0.945 7 C 0.025 3.975 8 N -0.910 5.910 9 Si 1.065 2.935 10 H -0.287 1.287 11 H -0.284 1.284 12 H -0.289 1.289 13 N -0.662 5.662 14 C 0.042 3.958 15 C 0.514 3.486 16 O -0.525 6.525 17 N -0.730 5.730 18 C 0.153 3.847 19 H 0.085 0.915 20 C -0.131 4.131 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.098 4.098 25 H 0.081 0.919 26 C -0.148 4.148 27 H 0.049 0.951 28 H 0.017 0.983 29 H 0.059 0.941 30 H 0.016 0.984 31 H 0.062 0.938 32 H 0.269 0.731 33 H 0.344 0.656 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.395 0.605 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.534 2.528 -21.228 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.145 4.145 3 C 0.096 3.904 4 H 0.010 0.990 5 C -0.632 4.632 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.546 5.546 9 Si 0.893 3.107 10 H -0.213 1.213 11 H -0.209 1.209 12 H -0.216 1.216 13 N -0.295 5.295 14 C -0.091 4.091 15 C 0.300 3.700 16 O -0.400 6.400 17 N -0.385 5.385 18 C 0.048 3.952 19 H 0.103 0.897 20 C -0.170 4.170 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.117 4.117 25 H 0.100 0.900 26 C -0.205 4.205 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.163 0.837 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.230 0.770 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.402 2.408 -19.610 19.806 hybrid contribution 1.157 0.303 -1.598 1.996 sum 2.560 2.711 -21.208 21.533 Atomic orbital electron populations 1.21425 0.96424 0.97704 1.02228 1.21494 0.96397 0.98156 0.98411 1.19289 0.92014 0.91434 0.87616 0.99004 1.21964 1.31188 1.18321 0.91739 0.92693 1.25700 0.95227 0.95440 1.01625 1.70801 1.23356 1.27982 1.32463 0.83609 0.75944 0.75568 0.75589 1.21306 1.20897 1.21555 1.60379 1.48131 1.17327 1.03615 1.21841 0.95716 1.00000 0.91586 1.20974 0.83932 0.81388 0.83661 1.90672 1.24289 1.41320 1.83684 1.46143 1.30551 1.51480 1.10306 1.20860 0.93314 0.95315 0.85748 0.89666 1.21918 0.98354 0.96546 1.00136 1.21496 0.97729 0.97468 0.98914 1.21548 0.96221 0.99698 0.98222 1.21606 0.97918 0.95701 1.00099 1.21416 0.95720 0.96636 0.97935 0.90028 1.21821 0.98230 0.99977 1.00486 0.93183 0.96423 0.92203 0.96495 0.91979 0.91934 0.83705 0.93630 0.89267 0.76960 0.91145 0.91454 0.91784 0.92172 0.92069 0.92040 0.92013 0.91737 0.92386 0.92632 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.52 37.16 0.35 -2.38 16 2 C -0.11 -2.51 5.49 -26.73 -0.15 -2.66 16 3 C 0.20 5.05 1.93 -68.86 -0.13 4.92 16 4 H -0.01 -0.20 7.12 -51.93 -0.37 -0.57 16 5 C -0.59 -16.31 7.31 -34.44 -0.25 -16.56 16 6 H 0.05 1.54 7.65 -52.49 -0.40 1.14 16 7 C 0.02 0.69 5.21 -17.82 -0.09 0.59 16 8 N -0.91 -26.68 12.84 55.43 0.71 -25.97 16 9 Si 1.06 25.11 29.91 -169.99 -5.08 20.02 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.66 -14.49 5.15 -109.22 -0.56 -15.05 16 14 C 0.04 0.73 5.99 -4.98 -0.03 0.70 16 15 C 0.51 8.37 7.83 -10.98 -0.09 8.28 16 16 O -0.53 -10.58 15.82 5.56 0.09 -10.49 16 17 N -0.73 -8.64 3.54 -53.81 -0.19 -8.83 16 18 C 0.15 1.64 2.23 -67.93 -0.15 1.49 16 19 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 20 C -0.13 -1.37 5.60 -26.73 -0.15 -1.52 16 21 C -0.12 -1.07 5.76 -26.73 -0.15 -1.22 16 22 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 23 C -0.12 -0.82 5.03 -26.73 -0.13 -0.96 16 24 C -0.10 -0.79 2.51 -90.62 -0.23 -1.02 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 C -0.15 -1.21 9.04 37.16 0.34 -0.88 16 27 H 0.05 1.12 7.63 -51.93 -0.40 0.72 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 1.47 7.20 -51.93 -0.37 1.09 16 30 H 0.02 0.36 7.62 -51.93 -0.40 -0.04 16 31 H 0.06 1.61 6.27 -51.93 -0.33 1.28 16 32 H 0.27 7.85 6.15 -40.82 -0.25 7.60 16 33 H 0.34 7.94 7.85 -39.29 -0.31 7.64 16 34 H 0.05 0.76 8.01 -51.93 -0.42 0.35 16 35 H 0.09 1.47 7.61 -51.93 -0.39 1.08 16 36 H 0.40 3.85 6.65 -40.82 -0.27 3.58 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.64 7.60 -51.93 -0.39 0.24 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.45 6.51 -51.93 -0.34 0.11 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.51 7.44 -51.93 -0.39 0.12 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 358.26 15.07 5.40 5.40 Total: -1.00 -30.70 358.26 -9.11 -39.80 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -8.44 Total: 7.35 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -1.03 Total: -12.23 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.04 Total: -49.85 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.70 -9.11 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581832698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.810 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds