Wall clock time and date at job start Tue Mar 31 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47037 * 2 1 4 4 H 1.09003 * 109.46864 * 177.94806 * 3 2 1 5 5 C 1.50698 * 109.47183 * 57.94905 * 3 2 1 6 6 H 1.08005 * 119.99876 * 240.00160 * 5 3 2 7 7 C 1.37877 * 120.00259 * 59.99846 * 5 3 2 8 8 N 1.31517 * 119.99634 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47551 * 60.00372 * 9 7 5 11 11 H 1.48504 * 109.47206 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47515 * 299.99936 * 9 7 5 13 13 N 1.46904 * 109.46850 * 297.94501 * 3 2 1 14 14 C 1.46891 * 111.00338 * 273.83229 * 13 3 2 15 15 C 1.50697 * 109.47373 * 174.45798 * 14 13 3 16 16 O 1.21276 * 119.99938 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99965 * 179.97438 * 15 14 13 18 18 C 1.46500 * 120.00234 * 359.97438 * 17 15 14 19 19 C 1.46506 * 119.99570 * 180.02562 * 17 15 14 20 20 C 1.52998 * 109.46751 * 240.00194 * 19 17 15 21 21 C 1.53003 * 109.46880 * 180.02562 * 20 19 17 22 22 C 1.53000 * 109.46979 * 60.00036 * 21 20 19 23 23 C 1.52998 * 109.47285 * 299.99716 * 22 21 20 24 24 C 1.53000 * 109.46894 * 120.00361 * 19 17 15 25 25 H 1.08996 * 109.47187 * 294.46382 * 1 2 3 26 26 H 1.08991 * 109.47151 * 54.46885 * 1 2 3 27 27 H 1.09004 * 109.46845 * 174.46811 * 1 2 3 28 28 H 1.08997 * 109.47293 * 239.99796 * 2 1 3 29 29 H 1.09004 * 109.47621 * 119.99656 * 2 1 3 30 30 H 0.97002 * 119.99315 * 179.97438 * 8 7 5 31 31 H 1.00895 * 110.99342 * 149.87808 * 13 3 2 32 32 H 1.09000 * 109.47369 * 54.45483 * 14 13 3 33 33 H 1.09004 * 109.47014 * 294.45830 * 14 13 3 34 34 H 1.09004 * 109.46547 * 89.99713 * 18 17 15 35 35 H 1.09000 * 109.47206 * 209.99767 * 18 17 15 36 36 H 1.09004 * 109.46968 * 330.00334 * 18 17 15 37 37 H 1.09002 * 109.47183 * 0.02562 * 19 17 15 38 38 H 1.09002 * 109.47306 * 299.99960 * 20 19 17 39 39 H 1.09000 * 109.47500 * 60.00063 * 20 19 17 40 40 H 1.08993 * 109.47200 * 299.99902 * 21 20 19 41 41 H 1.08999 * 109.47098 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.47184 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47313 * 60.00158 * 22 21 20 44 44 H 1.09002 * 109.47306 * 300.00447 * 23 22 21 45 45 H 1.09000 * 109.47500 * 180.02562 * 23 22 21 46 46 H 1.08999 * 109.46898 * 299.99535 * 24 19 17 47 47 H 1.08993 * 109.47264 * 59.99695 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1294 1.4427 0.0368 5 6 1.4965 2.1675 1.2042 6 1 0.8794 3.0442 1.0737 7 6 1.7870 1.7115 2.4726 8 7 2.5388 0.6441 2.6314 9 14 1.1128 2.6097 3.9652 10 1 -0.3713 2.6088 3.9149 11 1 1.5670 1.9247 5.2020 12 1 1.6072 4.0100 3.9654 13 7 1.5912 2.1205 -1.2235 14 6 2.5277 1.8839 -2.3302 15 6 1.9683 2.4776 -3.5973 16 8 0.8953 3.0427 -3.5800 17 7 2.6609 2.3815 -4.7496 18 6 3.9577 1.7004 -4.7701 19 6 2.1172 2.9593 -5.9813 20 6 1.9376 1.8560 -7.0260 21 6 1.3705 2.4595 -8.3125 22 6 2.3369 3.5174 -8.8489 23 6 2.5165 4.6206 -7.8041 24 6 3.0832 4.0175 -6.5178 25 1 -0.3633 0.4256 0.9354 26 1 -0.3633 0.5972 -0.8362 27 1 -0.3633 -1.0229 -0.0991 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.7435 0.3236 3.5238 31 1 1.4631 3.1083 -1.0632 32 1 2.6694 0.8114 -2.4633 33 1 3.4855 2.3514 -2.1019 34 1 3.8088 0.6419 -4.9838 35 1 4.5878 2.1419 -5.5423 36 1 4.4414 1.8105 -3.7995 37 1 1.1527 3.4215 -5.7709 38 1 2.9023 1.3942 -7.2362 39 1 1.2495 1.1021 -6.6438 40 1 0.4059 2.9215 -8.1027 41 1 1.2430 1.6736 -9.0570 42 1 1.9327 3.9476 -9.7651 43 1 3.3016 3.0553 -9.0588 44 1 1.5519 5.0827 -7.5942 45 1 3.2047 5.3746 -8.1864 46 1 3.2111 4.8034 -5.7735 47 1 4.0478 3.5557 -6.7280 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582614694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:16 Heat of formation + Delta-G solvation = -55.353110 kcal Electronic energy + Delta-G solvation = -23135.746039 eV Core-core repulsion = 19931.511632 eV Total energy + Delta-G solvation = -3204.234406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.08018 -38.07849 -35.97470 -34.90415 -32.56609 -30.97739 -30.80478 -29.93662 -27.17068 -26.70076 -24.81656 -23.11864 -22.81235 -22.19224 -19.86119 -19.18758 -18.76145 -16.94884 -16.52927 -15.98945 -15.52797 -15.01138 -14.73930 -14.39531 -14.23857 -13.98687 -13.70096 -13.20942 -13.00766 -12.88037 -12.72296 -12.57356 -12.37706 -12.26763 -11.99384 -11.77996 -11.36812 -11.32286 -11.31267 -10.89469 -10.86433 -10.77918 -10.48666 -10.43394 -10.37008 -10.06993 -9.84644 -9.36354 -9.22066 -8.77924 -8.50815 -8.44723 -7.21717 -6.00871 -4.05547 3.00772 3.09115 3.33404 3.37439 3.41467 4.42183 4.45855 4.56690 4.68881 4.83711 5.01957 5.03936 5.13250 5.24828 5.28074 5.29971 5.30362 5.41569 5.43679 5.47680 5.54219 5.66441 5.80866 5.83202 5.90139 5.90197 5.93514 5.94558 6.00923 6.16187 6.23381 6.54706 6.67821 6.74945 6.89248 7.25548 7.28062 7.51353 7.54797 7.77647 7.82446 7.85239 8.26974 8.39384 8.53337 8.68885 9.03284 9.59038 11.05369 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034079 B = 0.003284 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.426630 B = 8523.221715 C = 8684.096539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.101 4.101 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.669 5.669 14 C 0.047 3.953 15 C 0.515 3.485 16 O -0.524 6.524 17 N -0.622 5.622 18 C 0.078 3.922 19 C 0.140 3.860 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.127 4.127 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.012 0.988 28 H 0.008 0.992 29 H 0.086 0.914 30 H 0.261 0.739 31 H 0.339 0.661 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.298 2.631 -20.784 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.302 5.302 14 C -0.086 4.086 15 C 0.303 3.697 16 O -0.398 6.398 17 N -0.358 5.358 18 C -0.066 4.066 19 C 0.037 3.963 20 C -0.165 4.165 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.166 4.166 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.031 0.969 28 H 0.027 0.973 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.157 0.843 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.367 2.300 -20.760 21.157 hybrid contribution 0.618 0.819 1.080 1.490 sum 3.985 3.120 -19.681 20.321 Atomic orbital electron populations 1.21444 0.97385 0.97146 1.01795 1.21432 0.95283 0.98074 0.99176 1.19157 0.93224 0.91710 0.84896 0.98170 1.21148 1.31676 1.12043 0.90238 0.92198 1.24868 0.95066 0.95023 0.98827 1.69878 1.37422 1.23129 1.22480 0.86614 0.79541 0.79705 0.81887 1.20144 1.21374 1.20371 1.60388 1.46206 1.17221 1.06370 1.21809 0.95022 1.01154 0.90628 1.21130 0.84692 0.79089 0.84756 1.90650 1.21324 1.42424 1.85385 1.47996 1.21057 1.58117 1.08606 1.21748 0.84766 0.96941 1.03132 1.21008 0.98633 0.93280 0.83406 1.21867 1.01489 0.98089 0.95010 1.21502 0.99086 0.98295 0.96635 1.21558 0.99673 0.96450 0.98058 1.21489 1.01424 0.97697 0.94876 1.21873 0.98979 0.98400 0.97318 0.92910 0.93232 0.96899 0.97331 0.89576 0.92920 0.84251 0.89033 0.93595 0.92757 0.91344 0.90754 0.88248 0.91823 0.91570 0.91703 0.91821 0.92030 0.92046 0.91704 0.91832 0.91632 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 9.46 37.16 0.35 -2.48 16 2 C -0.10 -2.47 5.57 -26.73 -0.15 -2.62 16 3 C 0.22 5.42 2.30 -68.86 -0.16 5.26 16 4 H 0.00 0.02 7.84 -51.93 -0.41 -0.39 16 5 C -0.51 -13.93 7.33 -34.44 -0.25 -14.18 16 6 H 0.06 1.64 7.60 -52.48 -0.40 1.24 16 7 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -25.06 11.34 55.43 0.63 -24.44 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.67 -14.85 5.07 -109.22 -0.55 -15.40 16 14 C 0.05 0.84 4.49 -4.98 -0.02 0.82 16 15 C 0.51 8.93 7.73 -10.99 -0.08 8.84 16 16 O -0.52 -11.01 15.65 5.56 0.09 -10.92 16 17 N -0.62 -8.19 2.76 -173.93 -0.48 -8.67 16 18 C 0.08 0.76 9.30 59.85 0.56 1.32 16 19 C 0.14 1.64 2.52 -67.93 -0.17 1.47 16 20 C -0.13 -1.24 5.21 -26.73 -0.14 -1.37 16 21 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 22 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 23 C -0.12 -0.94 5.92 -26.76 -0.16 -1.10 16 24 C -0.13 -1.22 5.18 -26.75 -0.14 -1.36 16 25 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 26 H 0.05 1.17 7.50 -51.93 -0.39 0.78 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.01 0.18 7.42 -51.93 -0.39 -0.20 16 29 H 0.09 2.31 6.13 -51.93 -0.32 1.99 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.34 7.74 8.10 -39.29 -0.32 7.42 16 32 H 0.09 1.60 7.35 -51.93 -0.38 1.22 16 33 H 0.05 0.78 7.40 -51.93 -0.38 0.39 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.54 6.42 -51.93 -0.33 0.20 16 36 H 0.07 0.73 6.44 -51.93 -0.33 0.40 16 37 H 0.10 1.43 6.90 -51.93 -0.36 1.07 16 38 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.55 6.66 -51.93 -0.35 0.20 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -30.19 358.38 -9.22 -39.41 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.50 Total: 4.18 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -0.78 Total: -5.89 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.41 Total: -48.51 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.19 -9.22 -39.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582614694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.948 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds