Wall clock time and date at job start Tue Mar 31 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47013 * 2 1 4 4 H 1.08995 * 109.47008 * 304.24827 * 3 2 1 5 5 C 1.50700 * 109.46579 * 184.24781 * 3 2 1 6 6 H 1.08002 * 119.99622 * 239.99609 * 5 3 2 7 7 C 1.37873 * 120.00222 * 60.00523 * 5 3 2 8 8 N 1.31516 * 120.00143 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47347 * 59.99865 * 9 7 5 11 11 H 1.48502 * 109.46920 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47243 * 299.99356 * 9 7 5 13 13 N 1.46897 * 109.47060 * 64.24847 * 3 2 1 14 14 C 1.46900 * 111.00100 * 205.88997 * 13 3 2 15 15 C 1.50695 * 109.47144 * 174.71119 * 14 13 3 16 16 O 1.21273 * 120.00554 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99936 * 179.97438 * 15 14 13 18 18 C 1.46494 * 120.00046 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47139 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.46871 * 294.99893 * 19 18 17 21 21 C 1.52998 * 109.46961 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47046 * 60.00153 * 21 20 19 23 23 C 1.53001 * 109.46779 * 299.99925 * 22 21 20 24 24 C 1.52996 * 109.47068 * 174.99934 * 19 18 17 25 25 H 1.08999 * 109.47482 * 174.93413 * 1 2 3 26 26 H 1.09008 * 109.46822 * 294.92992 * 1 2 3 27 27 H 1.08991 * 109.47286 * 54.92878 * 1 2 3 28 28 H 1.08996 * 109.46777 * 240.00207 * 2 1 3 29 29 H 1.09004 * 109.47021 * 120.00238 * 2 1 3 30 30 H 0.97001 * 119.99851 * 180.02562 * 8 7 5 31 31 H 1.00905 * 111.00177 * 81.93891 * 13 3 2 32 32 H 1.08999 * 109.46604 * 54.70843 * 14 13 3 33 33 H 1.09003 * 109.46810 * 294.71015 * 14 13 3 34 34 H 0.96998 * 119.99570 * 0.02562 * 17 15 14 35 35 H 1.09003 * 109.47037 * 299.99759 * 18 17 15 36 36 H 1.08999 * 109.47170 * 60.00087 * 18 17 15 37 37 H 1.09002 * 109.46984 * 54.99686 * 19 18 17 38 38 H 1.09002 * 109.47142 * 300.00249 * 20 19 18 39 39 H 1.09002 * 109.47231 * 59.99705 * 20 19 18 40 40 H 1.08992 * 109.47504 * 300.00254 * 21 20 19 41 41 H 1.09003 * 109.47254 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.46982 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.46891 * 59.99630 * 22 21 20 44 44 H 1.09002 * 109.47168 * 299.99535 * 23 22 21 45 45 H 1.09002 * 109.46895 * 180.02562 * 23 22 21 46 46 H 1.09003 * 109.47191 * 299.99528 * 24 19 18 47 47 H 1.09002 * 109.47421 * 60.00019 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5433 1.4437 -0.1052 6 1 4.1389 1.8917 0.6764 7 6 4.1583 0.8731 -1.1994 8 7 3.4329 0.3272 -2.1510 9 14 6.0217 0.8752 -1.3301 10 1 6.6000 0.1463 -0.1728 11 1 6.4302 0.2052 -2.5908 12 1 6.5163 2.2754 -1.3305 13 7 1.6359 2.1047 1.2474 14 6 1.5387 3.5590 1.0639 15 6 0.9987 4.1890 2.3218 16 8 0.7224 3.4952 3.2773 17 7 0.8237 5.5240 2.3854 18 6 0.2993 6.1366 3.6084 19 6 0.1980 7.6512 3.4172 20 6 1.5999 8.2377 3.2397 21 6 1.4986 9.7522 3.0479 22 6 0.8354 10.3787 4.2762 23 6 -0.5665 9.7921 4.4536 24 6 -0.4650 8.2772 4.6458 25 1 -0.3634 -1.0236 -0.0907 26 1 -0.3633 0.4332 0.9320 27 1 -0.3633 0.5904 -0.8410 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8657 -0.0746 -2.9206 31 1 2.2689 1.8767 1.9994 32 1 0.8686 3.7762 0.2321 33 1 2.5274 3.9650 0.8497 34 1 1.0450 6.0790 1.6213 35 1 -0.6895 5.7309 3.8228 36 1 0.9695 5.9190 4.4400 37 1 -0.4006 7.8665 2.5320 38 1 2.1986 8.0224 4.1248 39 1 2.0723 7.7917 2.3644 40 1 0.9001 9.9672 2.1627 41 1 2.4974 10.1702 2.9219 42 1 0.7637 11.4577 4.1397 43 1 1.4339 10.1637 5.1615 44 1 -1.1650 10.0070 3.5683 45 1 -1.0392 10.2387 5.3284 46 1 -1.4638 7.8593 4.7722 47 1 0.1336 8.0619 5.5310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583329752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:27 Heat of formation + Delta-G solvation = -76.470194 kcal Electronic energy + Delta-G solvation = -22410.844924 eV Core-core repulsion = 19205.694813 eV Total energy + Delta-G solvation = -3205.150112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 4.21 seconds Orbital eigenvalues (eV) -39.65743 -38.54186 -35.94500 -34.63146 -32.45347 -31.51683 -31.04636 -30.85512 -27.51707 -25.96897 -24.30303 -22.91840 -22.41982 -21.37975 -20.29436 -19.77759 -19.47443 -16.93876 -16.42777 -15.90798 -15.60092 -15.15865 -14.74964 -14.56227 -14.39525 -14.24349 -13.72896 -13.45561 -13.31766 -12.81266 -12.53559 -12.48282 -12.31067 -12.04767 -11.94129 -11.66636 -11.41558 -11.25485 -11.17490 -11.14118 -10.89777 -10.74012 -10.64297 -10.43183 -10.32087 -10.17250 -9.74229 -9.55114 -9.23667 -9.03595 -8.84912 -8.38964 -7.24807 -6.00937 -4.14776 3.11728 3.27012 3.32586 3.35008 3.41205 4.35015 4.38078 4.43184 4.45756 4.85501 4.95592 5.00467 5.17046 5.18883 5.22865 5.23247 5.32191 5.35773 5.51752 5.55222 5.64358 5.72476 5.77508 5.85571 5.87757 5.92030 5.97963 5.99999 6.06575 6.17789 6.20787 6.45383 6.56748 6.65416 6.77074 7.12447 7.23967 7.43493 7.57111 7.73675 7.79357 8.09041 8.12886 8.31247 8.60346 8.69644 8.98187 9.53103 10.98807 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.003169 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.813703 B = 8834.490038 C = 9792.856824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.549 4.549 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.672 5.672 14 C 0.050 3.950 15 C 0.511 3.489 16 O -0.529 6.529 17 N -0.741 5.741 18 C 0.126 3.874 19 C -0.098 4.098 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.112 4.112 25 H 0.024 0.976 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.091 0.909 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.337 0.663 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.397 0.603 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 18.814 9.086 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.588 4.588 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.303 5.303 14 C -0.083 4.083 15 C 0.298 3.702 16 O -0.404 6.404 17 N -0.395 5.395 18 C 0.002 3.998 19 C -0.117 4.117 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.150 4.150 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.231 0.769 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.096 18.068 9.497 21.610 hybrid contribution 2.156 0.549 -0.607 2.306 sum -4.940 18.617 8.890 21.214 Atomic orbital electron populations 1.21695 0.98934 0.98315 1.00478 1.21486 0.92179 0.98976 1.01749 1.19194 0.92700 0.91388 0.85861 0.94955 1.21846 0.92681 1.38446 1.05870 0.92874 1.24927 0.98008 0.94877 0.95604 1.69871 1.35024 1.37788 1.09540 0.86702 0.85976 0.78168 0.77402 1.20237 1.21215 1.20409 1.60623 1.56258 1.03516 1.09903 1.21653 1.00169 0.92648 0.93826 1.21212 0.77261 0.81276 0.90437 1.90651 1.49556 1.61752 1.38416 1.46091 1.68477 1.07908 1.17048 1.21295 0.99353 0.91424 0.87750 1.21407 0.97231 0.93669 0.99379 1.21616 0.96270 0.95205 1.02288 1.21538 1.00603 0.95480 0.98121 1.21550 0.96360 0.99441 0.98471 1.21526 0.97009 0.95376 1.01669 1.21511 1.00756 0.95209 0.97526 0.95639 0.93269 0.94546 0.89114 0.94937 0.92768 0.84608 0.89263 0.92603 0.76862 0.91840 0.91886 0.90548 0.91729 0.91688 0.91978 0.92024 0.92246 0.92035 0.91986 0.92036 0.91663 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.73 37.16 0.36 -2.57 16 2 C -0.11 -2.58 5.45 -26.73 -0.15 -2.73 16 3 C 0.22 5.35 1.98 -68.87 -0.14 5.22 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.55 -14.68 8.47 -34.44 -0.29 -14.98 16 6 H 0.05 1.41 7.73 -52.49 -0.41 1.01 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.72 11.30 55.43 0.63 -24.09 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.67 -14.81 5.29 -109.23 -0.58 -15.38 16 14 C 0.05 0.93 5.99 -4.98 -0.03 0.90 16 15 C 0.51 8.79 7.88 -10.98 -0.09 8.70 16 16 O -0.53 -11.11 16.32 5.56 0.09 -11.02 16 17 N -0.74 -9.36 5.28 -60.30 -0.32 -9.67 16 18 C 0.13 1.41 5.06 -4.04 -0.02 1.39 16 19 C -0.10 -0.81 2.22 -90.62 -0.20 -1.01 16 20 C -0.12 -0.93 5.08 -26.73 -0.14 -1.07 16 21 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 22 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 23 C -0.12 -0.77 5.92 -26.71 -0.16 -0.93 16 24 C -0.11 -0.83 5.21 -26.71 -0.14 -0.97 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 1.05 7.88 -51.92 -0.41 0.64 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 2.44 5.97 -51.93 -0.31 2.13 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.34 7.69 8.29 -39.29 -0.33 7.37 16 32 H 0.09 1.55 7.92 -51.93 -0.41 1.14 16 33 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 34 H 0.40 4.04 7.65 -40.82 -0.31 3.73 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.54 7.18 -51.93 -0.37 0.16 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -29.83 368.07 -9.89 -39.73 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -8.84 Total: 7.23 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -1.39 Total: -8.23 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.27 Total: -49.15 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.83 -9.89 -39.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583329752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.743 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.21 seconds