Wall clock time and date at job start Tue Mar 31 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47013 * 2 1 4 4 H 1.08995 * 109.47008 * 304.24827 * 3 2 1 5 5 C 1.50700 * 109.46579 * 184.24781 * 3 2 1 6 6 H 1.08002 * 119.99622 * 239.99609 * 5 3 2 7 7 C 1.37873 * 120.00222 * 60.00523 * 5 3 2 8 8 N 1.31516 * 120.00143 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47347 * 59.99865 * 9 7 5 11 11 H 1.48502 * 109.46920 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47243 * 299.99356 * 9 7 5 13 13 N 1.46897 * 109.47060 * 64.24847 * 3 2 1 14 14 C 1.46900 * 111.00100 * 205.88997 * 13 3 2 15 15 C 1.50695 * 109.47144 * 174.71119 * 14 13 3 16 16 O 1.21273 * 120.00554 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99936 * 179.97438 * 15 14 13 18 18 C 1.46494 * 120.00046 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47139 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.46871 * 294.99893 * 19 18 17 21 21 C 1.52998 * 109.46961 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47046 * 60.00153 * 21 20 19 23 23 C 1.53001 * 109.46779 * 299.99925 * 22 21 20 24 24 C 1.52996 * 109.47068 * 174.99934 * 19 18 17 25 25 H 1.08999 * 109.47482 * 174.93413 * 1 2 3 26 26 H 1.09008 * 109.46822 * 294.92992 * 1 2 3 27 27 H 1.08991 * 109.47286 * 54.92878 * 1 2 3 28 28 H 1.08996 * 109.46777 * 240.00207 * 2 1 3 29 29 H 1.09004 * 109.47021 * 120.00238 * 2 1 3 30 30 H 0.97001 * 119.99851 * 180.02562 * 8 7 5 31 31 H 1.00905 * 111.00177 * 81.93891 * 13 3 2 32 32 H 1.08999 * 109.46604 * 54.70843 * 14 13 3 33 33 H 1.09003 * 109.46810 * 294.71015 * 14 13 3 34 34 H 0.96998 * 119.99570 * 0.02562 * 17 15 14 35 35 H 1.09003 * 109.47037 * 299.99759 * 18 17 15 36 36 H 1.08999 * 109.47170 * 60.00087 * 18 17 15 37 37 H 1.09002 * 109.46984 * 54.99686 * 19 18 17 38 38 H 1.09002 * 109.47142 * 300.00249 * 20 19 18 39 39 H 1.09002 * 109.47231 * 59.99705 * 20 19 18 40 40 H 1.08992 * 109.47504 * 300.00254 * 21 20 19 41 41 H 1.09003 * 109.47254 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.46982 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.46891 * 59.99630 * 22 21 20 44 44 H 1.09002 * 109.47168 * 299.99535 * 23 22 21 45 45 H 1.09002 * 109.46895 * 180.02562 * 23 22 21 46 46 H 1.09003 * 109.47191 * 299.99528 * 24 19 18 47 47 H 1.09002 * 109.47421 * 60.00019 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5433 1.4437 -0.1052 6 1 4.1389 1.8917 0.6764 7 6 4.1583 0.8731 -1.1994 8 7 3.4329 0.3272 -2.1510 9 14 6.0217 0.8752 -1.3301 10 1 6.6000 0.1463 -0.1728 11 1 6.4302 0.2052 -2.5908 12 1 6.5163 2.2754 -1.3305 13 7 1.6359 2.1047 1.2474 14 6 1.5387 3.5590 1.0639 15 6 0.9987 4.1890 2.3218 16 8 0.7224 3.4952 3.2773 17 7 0.8237 5.5240 2.3854 18 6 0.2993 6.1366 3.6084 19 6 0.1980 7.6512 3.4172 20 6 1.5999 8.2377 3.2397 21 6 1.4986 9.7522 3.0479 22 6 0.8354 10.3787 4.2762 23 6 -0.5665 9.7921 4.4536 24 6 -0.4650 8.2772 4.6458 25 1 -0.3634 -1.0236 -0.0907 26 1 -0.3633 0.4332 0.9320 27 1 -0.3633 0.5904 -0.8410 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8657 -0.0746 -2.9206 31 1 2.2689 1.8767 1.9994 32 1 0.8686 3.7762 0.2321 33 1 2.5274 3.9650 0.8497 34 1 1.0450 6.0790 1.6213 35 1 -0.6895 5.7309 3.8228 36 1 0.9695 5.9190 4.4400 37 1 -0.4006 7.8665 2.5320 38 1 2.1986 8.0224 4.1248 39 1 2.0723 7.7917 2.3644 40 1 0.9001 9.9672 2.1627 41 1 2.4974 10.1702 2.9219 42 1 0.7637 11.4577 4.1397 43 1 1.4339 10.1637 5.1615 44 1 -1.1650 10.0070 3.5683 45 1 -1.0392 10.2387 5.3284 46 1 -1.4638 7.8593 4.7722 47 1 0.1336 8.0619 5.5310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583329752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:26 Heat of formation + Delta-G solvation = -94.605438 kcal Electronic energy + Delta-G solvation = -22411.631328 eV Core-core repulsion = 19205.694813 eV Total energy + Delta-G solvation = -3205.936515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81766 -39.45085 -37.76208 -35.74136 -34.36331 -32.99785 -32.17348 -31.56950 -29.17093 -27.39063 -25.71285 -24.25507 -23.48473 -22.12685 -21.52193 -21.34002 -20.53435 -18.81845 -17.85445 -17.17062 -16.77558 -16.51718 -16.10494 -15.74846 -15.46551 -15.03966 -14.95338 -14.85107 -14.65729 -14.29198 -13.81096 -13.72524 -13.35319 -13.11750 -13.05881 -13.04209 -12.99741 -12.75316 -12.64804 -12.48932 -12.07718 -11.98838 -11.90108 -11.58868 -11.50145 -11.33327 -11.10960 -11.05488 -10.92164 -10.66896 -10.44941 -10.03125 -9.06811 -8.05059 -6.27689 1.40532 1.42569 1.49444 1.72056 2.21337 2.41661 3.15007 3.67100 3.76324 3.79485 3.86223 4.01741 4.23546 4.35110 4.39660 4.45562 4.55481 4.58126 4.64073 4.65377 4.66104 4.72723 4.76385 4.80073 4.88961 4.93510 5.04251 5.16468 5.19018 5.27372 5.28782 5.30873 5.40604 5.42203 5.45405 5.50481 5.52607 5.61515 5.62476 5.75546 6.06850 6.16722 6.33477 6.56865 6.78299 6.96786 7.34836 7.43890 8.91503 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.003169 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.813703 B = 8834.490038 C = 9792.856824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.224 3.776 4 H 0.012 0.988 5 C -0.564 4.564 6 H 0.050 0.950 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.674 5.674 14 C 0.050 3.950 15 C 0.516 3.484 16 O -0.571 6.571 17 N -0.719 5.719 18 C 0.126 3.874 19 C -0.087 4.087 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.112 4.112 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.023 0.977 30 H 0.263 0.737 31 H 0.331 0.669 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.412 0.588 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.230 20.487 9.207 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.029 0.971 5 C -0.603 4.603 6 H 0.068 0.932 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.304 5.304 14 C -0.082 4.082 15 C 0.303 3.697 16 O -0.449 6.449 17 N -0.373 5.373 18 C 0.003 3.997 19 C -0.106 4.106 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.150 4.150 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.249 0.751 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.104 19.801 9.608 23.127 hybrid contribution 2.136 0.076 -0.629 2.228 sum -4.968 19.877 8.979 22.370 Atomic orbital electron populations 1.21545 0.96523 0.99611 1.00459 1.21383 0.94327 0.98514 1.00005 1.18980 0.91731 0.91513 0.86198 0.97053 1.22119 0.93843 1.38470 1.05881 0.93217 1.25637 1.02146 0.94575 0.95346 1.69989 1.36582 1.38262 1.09908 0.85730 0.80949 0.78376 0.77266 1.20181 1.20861 1.19617 1.60537 1.55668 1.05766 1.08391 1.21690 1.00769 0.90705 0.95082 1.20910 0.77020 0.82469 0.89278 1.90638 1.51729 1.63046 1.39498 1.45901 1.66764 1.06510 1.18140 1.21404 0.98435 0.93348 0.86534 1.21337 0.97743 0.91231 1.00263 1.21613 0.95815 0.96152 1.01819 1.21524 1.00960 0.94485 0.98570 1.21558 0.96235 0.99960 0.98081 1.21513 0.97123 0.94442 1.02231 1.21515 1.00658 0.95983 0.96830 0.93701 0.93193 0.94510 0.91569 0.95808 0.92747 0.85290 0.88196 0.92243 0.75111 0.92580 0.92943 0.89673 0.92498 0.91931 0.91496 0.91802 0.91372 0.92349 0.91603 0.91267 0.91465 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 9.73 71.98 0.70 -4.54 16 2 C -0.10 -5.12 5.45 30.59 0.17 -4.96 16 3 C 0.22 11.21 1.98 44.17 0.09 11.30 16 4 H 0.01 0.62 7.70 -2.39 -0.02 0.60 16 5 C -0.56 -30.30 8.47 25.60 0.22 -30.09 16 6 H 0.05 2.65 7.73 -2.91 -0.02 2.62 16 7 C 0.02 1.27 5.29 84.65 0.45 1.72 16 8 N -0.91 -51.11 11.30 21.45 0.24 -50.87 16 9 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 N -0.67 -29.81 5.29 -499.48 -2.64 -32.46 16 14 C 0.05 1.83 5.99 85.56 0.51 2.35 16 15 C 0.52 17.48 7.88 87.65 0.69 18.17 16 16 O -0.57 -24.00 16.32 -3.01 -0.05 -24.05 16 17 N -0.72 -17.32 5.28 -463.07 -2.45 -19.76 16 18 C 0.13 2.71 5.06 86.38 0.44 3.15 16 19 C -0.09 -1.28 2.22 -10.79 -0.02 -1.31 16 20 C -0.12 -1.68 5.08 30.59 0.16 -1.53 16 21 C -0.12 -1.42 5.92 30.60 0.18 -1.24 16 22 C -0.12 -1.34 5.92 30.60 0.18 -1.15 16 23 C -0.12 -1.26 5.92 30.61 0.18 -1.08 16 24 C -0.11 -1.47 5.21 30.61 0.16 -1.31 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 2.09 7.88 -2.38 -0.02 2.07 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 3.61 5.97 -2.39 -0.01 3.60 16 29 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.33 15.29 8.29 -89.69 -0.74 14.54 16 32 H 0.10 3.40 7.92 -2.39 -0.02 3.38 16 33 H 0.06 2.13 8.12 -2.39 -0.02 2.12 16 34 H 0.41 7.61 7.65 -92.71 -0.71 6.91 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 0.93 7.18 -2.39 -0.02 0.91 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -63.29 368.07 0.70 -62.59 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -0.52 Total: 30.31 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 4.10 Total: -10.52 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -4.85 Total: -103.09 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.05 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -63.29 0.70 -62.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583329752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.013 kcal (2) G-P(sol) polarization free energy of solvation -63.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds