Wall clock time and date at job start Tue Mar 31 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.46940 * 2 1 4 4 H 1.08995 * 109.47703 * 54.74114 * 3 2 1 5 5 C 1.50705 * 109.47101 * 174.73721 * 3 2 1 6 6 H 1.08001 * 119.99648 * 120.16113 * 5 3 2 7 7 C 1.37870 * 120.00038 * 300.17065 * 5 3 2 8 8 N 1.31519 * 120.00260 * 166.67092 * 7 5 3 9 9 Si 1.86801 * 120.00025 * 346.66619 * 7 5 3 10 10 H 1.48505 * 109.46944 * 264.65368 * 9 7 5 11 11 H 1.48497 * 109.46894 * 24.65059 * 9 7 5 12 12 H 1.48499 * 109.47222 * 144.65073 * 9 7 5 13 13 N 1.46899 * 109.47228 * 294.73693 * 3 2 1 14 14 C 1.46904 * 111.00002 * 101.42380 * 13 3 2 15 15 C 1.50706 * 109.46949 * 182.84904 * 14 13 3 16 16 O 1.21283 * 120.00183 * 359.97438 * 15 14 13 17 17 N 1.34770 * 119.99819 * 179.97438 * 15 14 13 18 18 C 1.46499 * 120.00122 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47116 * 179.97438 * 18 17 15 20 20 C 1.52993 * 109.47089 * 294.99789 * 19 18 17 21 21 C 1.53006 * 109.47089 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.46828 * 60.00323 * 21 20 19 23 23 C 1.52996 * 109.46752 * 299.99966 * 22 21 20 24 24 C 1.52995 * 109.47694 * 60.00256 * 23 22 21 25 25 H 1.08997 * 109.47165 * 186.79182 * 1 2 3 26 26 H 1.08997 * 109.47007 * 306.79514 * 1 2 3 27 27 H 1.09006 * 109.46729 * 66.78928 * 1 2 3 28 28 H 1.08995 * 109.47086 * 239.99451 * 2 1 3 29 29 H 1.08998 * 109.46763 * 119.99661 * 2 1 3 30 30 H 0.96997 * 119.99901 * 180.02562 * 8 7 5 31 31 H 1.00899 * 111.00257 * 337.46846 * 13 3 2 32 32 H 1.08996 * 109.46595 * 302.84479 * 14 13 3 33 33 H 1.08994 * 109.47473 * 62.84669 * 14 13 3 34 34 H 0.97006 * 120.00026 * 0.02562 * 17 15 14 35 35 H 1.08996 * 109.46967 * 299.99625 * 18 17 15 36 36 H 1.09004 * 109.47023 * 59.99913 * 18 17 15 37 37 H 1.08998 * 109.46933 * 55.00026 * 19 18 17 38 38 H 1.08998 * 109.47427 * 299.99935 * 20 19 18 39 39 H 1.09001 * 109.47075 * 59.99987 * 20 19 18 40 40 H 1.08998 * 109.46933 * 300.00237 * 21 20 19 41 41 H 1.08996 * 109.47075 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.46781 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47100 * 59.99791 * 22 21 20 44 44 H 1.09009 * 109.47330 * 299.99756 * 23 22 21 45 45 H 1.09001 * 109.46806 * 180.02562 * 23 22 21 46 46 H 1.08993 * 109.48047 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.47198 * 59.99537 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6018 1.9828 0.8391 5 6 3.5414 1.4445 0.1303 6 1 4.1499 1.8902 -0.6427 7 6 4.1381 0.8772 1.2362 8 7 5.4319 0.6407 1.2366 9 14 3.1091 0.4446 2.7340 10 1 3.1752 1.5553 3.7175 11 1 1.6986 0.2324 2.3209 12 1 3.6355 -0.7978 3.3541 13 7 1.6568 2.0973 -1.2579 14 6 0.4894 2.9677 -1.0639 15 6 0.0838 3.5661 -2.3863 16 8 0.7062 3.2946 -3.3912 17 7 -0.9706 4.4030 -2.4521 18 6 -1.3653 4.9843 -3.7376 19 6 -2.5818 5.8900 -3.5357 20 6 -3.7773 5.0462 -3.0890 21 6 -4.9940 5.9518 -2.8878 22 6 -5.3297 6.6549 -4.2045 23 6 -4.1342 7.4987 -4.6512 24 6 -2.9175 6.5932 -4.8524 25 1 -0.3633 -1.0204 0.1215 26 1 -0.3633 0.6155 0.8229 27 1 -0.3633 0.4050 -0.9446 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8516 0.2412 2.0145 31 1 1.4837 1.4163 -1.9820 32 1 -0.3372 2.3825 -0.6611 33 1 0.7432 3.7659 -0.3665 34 1 -1.4681 4.6204 -1.6482 35 1 -0.5389 5.5697 -4.1406 36 1 -1.6189 4.1857 -4.4348 37 1 -2.3574 6.6350 -2.7724 38 1 -4.0017 4.3011 -3.8523 39 1 -3.5380 4.5448 -2.1512 40 1 -4.7699 6.6971 -2.1246 41 1 -5.8458 5.3506 -2.5700 42 1 -6.1962 7.3004 -4.0611 43 1 -5.5538 5.9096 -4.9676 44 1 -3.9101 8.2442 -3.8881 45 1 -4.3735 8.0000 -5.5891 46 1 -2.0659 7.1942 -5.1711 47 1 -3.1415 5.8479 -5.6155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583329753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:35 Heat of formation + Delta-G solvation = -61.221076 kcal Electronic energy + Delta-G solvation = -22531.078230 eV Core-core repulsion = 19326.589369 eV Total energy + Delta-G solvation = -3204.488860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.79828 -38.69131 -36.54691 -34.75997 -32.43142 -31.66931 -31.18298 -30.97895 -28.15719 -26.34440 -24.42686 -22.97464 -22.37484 -21.47308 -20.42623 -20.06649 -19.82253 -17.14920 -16.39553 -16.05258 -15.76768 -15.38329 -15.00867 -14.71813 -14.46856 -14.38505 -13.95234 -13.71635 -13.42261 -12.99211 -12.80187 -12.56323 -12.55172 -12.42591 -12.11439 -11.83196 -11.69745 -11.51755 -11.47860 -11.30734 -10.99095 -10.80731 -10.76136 -10.50769 -10.47486 -10.38848 -9.98691 -9.54958 -9.22306 -9.21362 -8.97416 -8.37625 -7.32352 -6.01120 -3.94102 2.95275 3.26542 3.28198 3.36721 3.39810 4.27912 4.36463 4.38662 4.45299 4.79003 4.88349 4.92084 5.08427 5.10924 5.16007 5.16706 5.20314 5.25749 5.28684 5.45289 5.57111 5.65735 5.68017 5.70394 5.76728 5.79041 5.81061 5.82729 5.83759 5.84990 5.91968 5.98338 5.99581 6.13369 6.45491 6.51909 6.54868 6.73408 6.81238 7.18745 7.57828 7.77686 7.95404 8.33319 8.51417 8.76233 9.17949 9.64113 11.12529 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032350 B = 0.002974 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.314184 B = 9411.257679 C = 9753.705952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.158 4.158 3 C 0.195 3.805 4 H 0.023 0.977 5 C -0.498 4.498 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.896 5.896 9 Si 0.857 3.143 10 H -0.284 1.284 11 H -0.247 1.247 12 H -0.288 1.288 13 N -0.655 5.655 14 C 0.039 3.961 15 C 0.511 3.489 16 O -0.524 6.524 17 N -0.739 5.739 18 C 0.125 3.875 19 C -0.098 4.098 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.112 4.112 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.262 0.738 31 H 0.338 0.662 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.397 0.603 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.645 11.098 -7.659 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.197 4.197 3 C 0.086 3.914 4 H 0.041 0.959 5 C -0.537 4.537 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.534 5.534 9 Si 0.684 3.316 10 H -0.210 1.210 11 H -0.172 1.172 12 H -0.214 1.214 13 N -0.287 5.287 14 C -0.094 4.094 15 C 0.298 3.702 16 O -0.398 6.398 17 N -0.394 5.394 18 C 0.001 3.999 19 C -0.117 4.117 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.150 4.150 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.157 0.843 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.231 0.769 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.553 11.321 -8.234 26.544 hybrid contribution -1.382 -0.811 1.469 2.174 sum -23.935 10.511 -6.765 27.002 Atomic orbital electron populations 1.21948 0.98568 1.00409 1.00233 1.22768 0.92812 1.01694 1.02403 1.19593 0.96934 0.88085 0.86762 0.95914 1.21019 0.89020 1.36944 1.06674 0.90015 1.24929 0.94748 0.95117 0.98421 1.69964 1.10334 1.43461 1.29690 0.87429 0.82291 0.77974 0.83891 1.21025 1.17153 1.21433 1.60394 1.32415 1.25976 1.09943 1.21992 0.94835 0.98958 0.93649 1.21004 0.79040 0.78400 0.91798 1.90692 1.52272 1.59725 1.37161 1.46059 1.33102 1.49404 1.10804 1.21328 0.96097 0.96444 0.86018 1.21409 0.94258 0.97414 0.98623 1.21614 0.94328 0.97815 1.01569 1.21539 0.97835 0.98833 0.97535 1.21550 0.97706 0.99059 0.97513 1.21520 0.94953 0.97895 1.01242 1.21502 0.98082 0.98814 0.96627 0.93819 0.93551 0.93773 0.92148 0.91556 0.92836 0.84302 0.93207 0.88685 0.76883 0.91622 0.91781 0.90499 0.91724 0.91827 0.91972 0.92046 0.92213 0.92015 0.91966 0.91974 0.91579 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.63 37.16 0.32 -2.29 16 2 C -0.16 -3.33 4.37 -26.73 -0.12 -3.45 16 3 C 0.19 4.52 1.75 -68.87 -0.12 4.40 16 4 H 0.02 0.53 6.67 -51.93 -0.35 0.18 16 5 C -0.50 -14.22 9.35 -34.44 -0.32 -14.54 16 6 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 7 C 0.07 1.99 5.35 -17.82 -0.10 1.90 16 8 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 9 Si 0.86 20.74 25.68 -169.99 -4.37 16.37 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.25 -5.46 5.15 56.52 0.29 -5.17 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 N -0.66 -13.95 5.75 -109.22 -0.63 -14.57 16 14 C 0.04 0.64 5.56 -4.97 -0.03 0.61 16 15 C 0.51 8.20 7.86 -10.99 -0.09 8.12 16 16 O -0.52 -10.64 16.14 5.55 0.09 -10.55 16 17 N -0.74 -8.47 5.28 -60.29 -0.32 -8.79 16 18 C 0.13 1.30 5.06 -4.04 -0.02 1.28 16 19 C -0.10 -0.73 2.23 -90.62 -0.20 -0.93 16 20 C -0.12 -0.81 5.08 -26.73 -0.14 -0.94 16 21 C -0.12 -0.74 5.92 -26.72 -0.16 -0.89 16 22 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 23 C -0.12 -0.71 5.92 -26.74 -0.16 -0.87 16 24 C -0.11 -0.76 5.20 -26.73 -0.14 -0.90 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 27 H 0.04 0.69 6.71 -51.93 -0.35 0.34 16 28 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 29 H 0.07 1.48 4.10 -51.93 -0.21 1.27 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 31 H 0.34 7.16 7.58 -39.29 -0.30 6.87 16 32 H 0.05 0.73 6.02 -51.93 -0.31 0.42 16 33 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.40 3.47 7.66 -40.82 -0.31 3.16 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.44 7.18 -51.93 -0.37 0.07 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -32.83 356.77 -9.12 -41.96 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.63 Total: 6.50 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -1.42 Total: -9.38 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.17 Total: -50.28 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.37 Total: 16.37 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.83 -9.12 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583329753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.266 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds