Wall clock time and date at job start Tue Mar 31 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47331 * 2 1 4 4 H 1.09000 * 109.47471 * 305.00100 * 3 2 1 5 5 C 1.53006 * 109.46965 * 65.00115 * 3 2 1 6 6 C 1.52999 * 109.47305 * 184.99929 * 3 2 1 7 7 C 1.52998 * 109.47365 * 175.00307 * 6 3 2 8 8 C 1.50694 * 109.47365 * 180.02562 * 7 6 3 9 9 O 1.21283 * 120.00125 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00137 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00162 * 179.97438 * 10 8 7 12 12 C 1.53034 * 109.46609 * 275.03111 * 11 10 8 13 13 C 1.53190 * 109.31630 * 178.59919 * 12 11 10 14 14 N 1.46932 * 108.76191 * 54.65459 * 13 12 11 15 15 C 1.36934 * 120.62803 * 126.41063 * 14 13 12 16 16 H 1.08000 * 120.00499 * 332.60115 * 15 14 13 17 17 C 1.38818 * 120.00184 * 152.60693 * 15 14 13 18 18 N 1.31616 * 119.99826 * 159.33694 * 17 15 14 19 19 Si 1.86798 * 119.99816 * 339.34325 * 17 15 14 20 20 H 1.48494 * 109.47094 * 92.94019 * 19 17 15 21 21 H 1.48494 * 109.47090 * 212.94047 * 19 17 15 22 22 H 1.48501 * 109.46853 * 332.94133 * 19 17 15 23 23 C 1.46929 * 118.74047 * 306.38371 * 14 13 12 24 24 C 1.53044 * 109.45894 * 154.97340 * 11 10 8 25 25 H 1.09000 * 109.47398 * 299.99897 * 1 2 3 26 26 H 1.09001 * 109.47101 * 59.99967 * 1 2 3 27 27 H 1.09004 * 109.47367 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47398 * 240.00103 * 2 1 3 29 29 H 1.09001 * 109.47101 * 120.00033 * 2 1 3 30 30 H 1.09001 * 109.46730 * 299.99918 * 5 3 2 31 31 H 1.09000 * 109.47038 * 59.99720 * 5 3 2 32 32 H 1.08996 * 109.47045 * 180.02562 * 5 3 2 33 33 H 1.08998 * 109.47116 * 295.00380 * 6 3 2 34 34 H 1.08999 * 109.47246 * 54.99838 * 6 3 2 35 35 H 1.08998 * 109.47063 * 300.00105 * 7 6 3 36 36 H 1.09000 * 109.46949 * 59.99969 * 7 6 3 37 37 H 0.97008 * 119.99737 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.45891 * 35.01019 * 11 10 8 39 39 H 1.09004 * 109.49801 * 298.56831 * 12 11 10 40 40 H 1.09001 * 109.49601 * 58.65770 * 12 11 10 41 41 H 1.09000 * 109.60191 * 294.86973 * 13 12 11 42 42 H 1.08998 * 109.70790 * 174.50337 * 13 12 11 43 43 H 0.97001 * 119.99750 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.58415 * 293.81976 * 23 14 13 45 45 H 1.08997 * 109.70299 * 173.46553 * 23 14 13 46 46 H 1.09000 * 109.49674 * 301.33834 * 24 11 10 47 47 H 1.09000 * 109.49807 * 61.40534 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4443 -0.1257 7 6 4.0646 2.8849 -0.2510 8 6 5.5664 2.8867 -0.3755 9 8 6.1770 1.8389 -0.3645 10 7 6.2310 4.0526 -0.4990 11 6 7.6910 4.0544 -0.6194 12 6 8.3179 4.0130 0.7761 13 6 9.8438 3.9796 0.6453 14 7 10.2729 5.1205 -0.1751 15 6 11.2216 5.9937 0.2860 16 1 11.3457 6.1450 1.3481 17 6 12.0239 6.6847 -0.6118 18 7 12.6321 7.7895 -0.2354 19 14 12.2399 6.0465 -2.3540 20 1 11.2341 6.6822 -3.2423 21 1 13.6051 6.3763 -2.8362 22 1 12.0523 4.5734 -2.3683 23 6 9.6652 5.3063 -1.4998 24 6 8.1412 5.3245 -1.3449 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1252 1.3969 31 1 2.0699 1.5874 2.1492 32 1 1.9982 3.1543 1.3072 33 1 4.0029 0.9835 0.7596 34 1 3.8571 0.8800 -1.0113 35 1 3.6265 3.3457 -1.1363 36 1 3.7723 3.4492 0.6346 37 1 5.7426 4.8908 -0.5074 38 1 8.0096 3.1799 -1.1867 39 1 8.0197 4.8998 1.3353 40 1 7.9782 3.1201 1.3011 41 1 10.1495 3.0495 0.1661 42 1 10.2990 4.0483 1.6333 43 1 13.1924 8.2725 -0.8628 44 1 9.9563 4.4844 -2.1539 45 1 10.0001 6.2508 -1.9286 46 1 7.6760 5.3652 -2.3298 47 1 7.8443 6.1989 -0.7659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586776167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:20 Heat of formation + Delta-G solvation = -47.845400 kcal Electronic energy + Delta-G solvation = -22584.173723 eV Core-core repulsion = 19380.264875 eV Total energy + Delta-G solvation = -3203.908847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.89862 -37.92832 -37.13895 -34.53392 -32.65480 -32.03482 -30.44781 -30.16793 -28.89153 -26.24530 -24.82223 -23.09232 -22.68488 -21.63194 -20.21812 -20.08602 -19.52309 -17.22508 -16.61309 -16.01405 -15.91212 -15.27096 -14.92105 -14.67849 -14.16570 -13.93319 -13.86403 -13.63086 -13.47001 -13.08917 -12.97719 -12.66149 -12.40285 -12.24253 -12.02187 -11.95344 -11.90394 -11.77260 -11.19320 -10.97846 -10.84709 -10.82946 -10.79028 -10.69325 -10.55215 -10.27769 -10.14863 -9.86524 -9.60485 -9.45484 -8.78331 -8.63295 -6.99396 -5.95489 -3.31202 2.75400 3.30217 3.30702 3.48743 3.52291 4.43485 4.52383 4.55221 4.58247 4.85159 4.95212 4.95999 5.06785 5.12595 5.20121 5.25882 5.26185 5.33832 5.40659 5.42067 5.49174 5.64352 5.67952 5.72096 5.76402 5.80382 5.81335 5.82538 5.98656 6.04264 6.11522 6.14756 6.17508 6.21031 6.34488 6.40960 6.57813 6.64702 6.65833 6.77720 6.92605 7.65612 7.95610 8.32454 8.36257 8.93416 9.71409 10.09278 11.20485 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.047317 B = 0.002828 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.609875 B = 9898.844925 C =10015.096962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.152 4.152 6 C -0.099 4.099 7 C -0.142 4.142 8 C 0.508 3.492 9 O -0.544 6.544 10 N -0.727 5.727 11 C 0.150 3.850 12 C -0.140 4.140 13 C 0.150 3.850 14 N -0.606 5.606 15 C -0.259 4.259 16 H 0.086 0.914 17 C 0.022 3.978 18 N -0.908 5.908 19 Si 0.882 3.118 20 H -0.289 1.289 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.129 3.871 24 C -0.140 4.140 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.397 0.603 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.025 0.975 42 H 0.066 0.934 43 H 0.262 0.738 44 H 0.027 0.973 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.624 -10.291 -0.424 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.209 4.209 6 C -0.137 4.137 7 C -0.182 4.182 8 C 0.294 3.706 9 O -0.421 6.421 10 N -0.377 5.377 11 C 0.046 3.954 12 C -0.180 4.180 13 C 0.024 3.976 14 N -0.330 5.330 15 C -0.387 4.387 16 H 0.104 0.896 17 C -0.177 4.177 18 N -0.551 5.551 19 Si 0.712 3.288 20 H -0.217 1.217 21 H -0.231 1.231 22 H -0.195 1.195 23 C 0.003 3.997 24 C -0.180 4.180 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.230 0.770 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.032 -10.918 -0.436 25.493 hybrid contribution -0.040 0.288 -1.039 1.079 sum -23.072 -10.631 -1.476 25.447 Atomic orbital electron populations 1.21827 0.96027 1.01445 1.01803 1.21566 0.95682 0.96357 1.02192 1.21207 0.95330 0.96265 0.98393 0.91244 1.21957 1.01172 1.00522 0.97256 1.21386 0.94005 0.94823 1.03460 1.21753 0.92321 1.00113 1.04044 1.20727 0.90046 0.83831 0.75958 1.90696 1.70070 1.31487 1.49845 1.46330 1.08453 1.08526 1.74406 1.20970 0.77873 0.99281 0.97273 1.22364 0.98411 1.01245 0.96018 1.20898 0.91087 0.89754 0.95859 1.44405 1.44891 1.28127 1.15594 1.18931 1.09902 1.16040 0.93828 0.89644 1.25291 0.97446 0.97058 0.97884 1.69836 1.34194 1.15187 1.35924 0.86965 0.76015 0.79995 0.85803 1.21652 1.23103 1.19494 1.21298 0.89927 1.00102 0.88387 1.22337 0.99398 0.96895 0.99357 0.92527 0.92872 0.92966 0.91960 0.91925 0.92608 0.92608 0.92536 0.91161 0.91263 0.89241 0.88922 0.77003 0.90044 0.91897 0.92337 0.95737 0.91600 0.92776 0.95523 0.90530 0.92322 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.67 37.16 0.36 -0.57 16 2 C -0.12 -0.85 5.40 -26.73 -0.14 -0.99 16 3 C -0.09 -0.67 2.39 -90.62 -0.22 -0.89 16 4 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 5 C -0.15 -1.01 8.70 37.16 0.32 -0.68 16 6 C -0.10 -0.92 3.97 -26.73 -0.11 -1.03 16 7 C -0.14 -1.28 5.45 -27.89 -0.15 -1.43 16 8 C 0.51 6.77 7.79 -10.99 -0.09 6.68 16 9 O -0.54 -9.51 15.64 5.56 0.09 -9.42 16 10 N -0.73 -9.36 5.08 -53.77 -0.27 -9.64 16 11 C 0.15 2.44 2.42 -67.89 -0.16 2.27 16 12 C -0.14 -2.44 5.65 -26.62 -0.15 -2.59 16 13 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 14 N -0.61 -14.46 2.77 -172.32 -0.48 -14.94 16 15 C -0.26 -7.23 10.03 -15.06 -0.15 -7.38 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 17 C 0.02 0.64 5.23 -17.43 -0.09 0.54 16 18 N -0.91 -27.79 13.97 55.49 0.78 -27.01 16 19 Si 0.88 22.38 24.35 -169.99 -4.14 18.25 16 20 H -0.29 -7.00 6.62 56.52 0.37 -6.63 16 21 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 22 H -0.27 -6.79 6.63 56.52 0.37 -6.42 16 23 C 0.13 2.79 4.20 -3.71 -0.02 2.78 16 24 C -0.14 -2.38 5.55 -26.61 -0.15 -2.53 16 25 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.33 6.56 -51.93 -0.34 -0.01 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 33 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.69 6.57 -51.93 -0.34 0.35 16 37 H 0.40 3.98 8.60 -40.82 -0.35 3.63 16 38 H 0.08 1.49 7.58 -51.93 -0.39 1.09 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.03 0.58 7.07 -51.93 -0.37 0.21 16 45 H 0.08 1.80 4.50 -51.93 -0.23 1.56 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -32.16 357.36 -8.05 -40.22 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -8.65 Total: -0.07 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.77 Total: -2.77 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.02 Total: -51.59 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.16 -8.05 -40.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586776167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.628 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds