Wall clock time and date at job start Tue Mar 31 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47331 * 2 1 4 4 H 1.09000 * 109.47471 * 305.00100 * 3 2 1 5 5 C 1.53006 * 109.46965 * 65.00115 * 3 2 1 6 6 C 1.52999 * 109.47305 * 184.99929 * 3 2 1 7 7 C 1.52998 * 109.47365 * 175.00307 * 6 3 2 8 8 C 1.50694 * 109.47365 * 180.02562 * 7 6 3 9 9 O 1.21283 * 120.00125 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00137 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00162 * 179.97438 * 10 8 7 12 12 C 1.53034 * 109.46609 * 275.03111 * 11 10 8 13 13 C 1.53190 * 109.31630 * 178.59919 * 12 11 10 14 14 N 1.46932 * 108.76191 * 54.65459 * 13 12 11 15 15 C 1.36934 * 120.62803 * 126.41063 * 14 13 12 16 16 H 1.08000 * 120.00499 * 332.60115 * 15 14 13 17 17 C 1.38818 * 120.00184 * 152.60693 * 15 14 13 18 18 N 1.31616 * 119.99826 * 159.33694 * 17 15 14 19 19 Si 1.86798 * 119.99816 * 339.34325 * 17 15 14 20 20 H 1.48494 * 109.47094 * 92.94019 * 19 17 15 21 21 H 1.48494 * 109.47090 * 212.94047 * 19 17 15 22 22 H 1.48501 * 109.46853 * 332.94133 * 19 17 15 23 23 C 1.46929 * 118.74047 * 306.38371 * 14 13 12 24 24 C 1.53044 * 109.45894 * 154.97340 * 11 10 8 25 25 H 1.09000 * 109.47398 * 299.99897 * 1 2 3 26 26 H 1.09001 * 109.47101 * 59.99967 * 1 2 3 27 27 H 1.09004 * 109.47367 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47398 * 240.00103 * 2 1 3 29 29 H 1.09001 * 109.47101 * 120.00033 * 2 1 3 30 30 H 1.09001 * 109.46730 * 299.99918 * 5 3 2 31 31 H 1.09000 * 109.47038 * 59.99720 * 5 3 2 32 32 H 1.08996 * 109.47045 * 180.02562 * 5 3 2 33 33 H 1.08998 * 109.47116 * 295.00380 * 6 3 2 34 34 H 1.08999 * 109.47246 * 54.99838 * 6 3 2 35 35 H 1.08998 * 109.47063 * 300.00105 * 7 6 3 36 36 H 1.09000 * 109.46949 * 59.99969 * 7 6 3 37 37 H 0.97008 * 119.99737 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.45891 * 35.01019 * 11 10 8 39 39 H 1.09004 * 109.49801 * 298.56831 * 12 11 10 40 40 H 1.09001 * 109.49601 * 58.65770 * 12 11 10 41 41 H 1.09000 * 109.60191 * 294.86973 * 13 12 11 42 42 H 1.08998 * 109.70790 * 174.50337 * 13 12 11 43 43 H 0.97001 * 119.99750 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.58415 * 293.81976 * 23 14 13 45 45 H 1.08997 * 109.70299 * 173.46553 * 23 14 13 46 46 H 1.09000 * 109.49674 * 301.33834 * 24 11 10 47 47 H 1.09000 * 109.49807 * 61.40534 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4443 -0.1257 7 6 4.0646 2.8849 -0.2510 8 6 5.5664 2.8867 -0.3755 9 8 6.1770 1.8389 -0.3645 10 7 6.2310 4.0526 -0.4990 11 6 7.6910 4.0544 -0.6194 12 6 8.3179 4.0130 0.7761 13 6 9.8438 3.9796 0.6453 14 7 10.2729 5.1205 -0.1751 15 6 11.2216 5.9937 0.2860 16 1 11.3457 6.1450 1.3481 17 6 12.0239 6.6847 -0.6118 18 7 12.6321 7.7895 -0.2354 19 14 12.2399 6.0465 -2.3540 20 1 11.2341 6.6822 -3.2423 21 1 13.6051 6.3763 -2.8362 22 1 12.0523 4.5734 -2.3683 23 6 9.6652 5.3063 -1.4998 24 6 8.1412 5.3245 -1.3449 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1252 1.3969 31 1 2.0699 1.5874 2.1492 32 1 1.9982 3.1543 1.3072 33 1 4.0029 0.9835 0.7596 34 1 3.8571 0.8800 -1.0113 35 1 3.6265 3.3457 -1.1363 36 1 3.7723 3.4492 0.6346 37 1 5.7426 4.8908 -0.5074 38 1 8.0096 3.1799 -1.1867 39 1 8.0197 4.8998 1.3353 40 1 7.9782 3.1201 1.3011 41 1 10.1495 3.0495 0.1661 42 1 10.2990 4.0483 1.6333 43 1 13.1924 8.2725 -0.8628 44 1 9.9563 4.4844 -2.1539 45 1 10.0001 6.2508 -1.9286 46 1 7.6760 5.3652 -2.3298 47 1 7.8443 6.1989 -0.7659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586776167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:19 Heat of formation + Delta-G solvation = -68.453786 kcal Electronic energy + Delta-G solvation = -22585.067369 eV Core-core repulsion = 19380.264875 eV Total energy + Delta-G solvation = -3204.802494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.03794 -39.29477 -37.94850 -36.03034 -34.10717 -33.22608 -32.00427 -31.71676 -29.57747 -27.24425 -26.26535 -24.58565 -23.85752 -22.98040 -21.32249 -21.00594 -20.70230 -18.93610 -17.85729 -17.53097 -16.78410 -16.66604 -15.98001 -15.85718 -15.51051 -15.36545 -15.02736 -14.63683 -14.57796 -14.40595 -14.25239 -14.05688 -13.79999 -13.48024 -13.34105 -12.77581 -12.62467 -12.59510 -12.56553 -12.46542 -12.28822 -12.04152 -11.82454 -11.79337 -11.58081 -11.44393 -11.37962 -11.35820 -11.27314 -10.87989 -10.63027 -9.99941 -8.98353 -8.17391 -5.49862 1.28231 1.41847 1.50574 1.72507 2.25013 2.40312 3.04320 3.30468 3.71823 3.81783 3.85640 3.96018 4.00032 4.18838 4.21870 4.29959 4.35461 4.45801 4.47568 4.59474 4.61636 4.66101 4.71531 4.75154 4.80002 4.88500 4.91340 4.94130 5.00496 5.05193 5.12216 5.14469 5.14765 5.21360 5.25872 5.27781 5.36611 5.39986 5.55813 5.60866 5.61383 5.85315 6.11497 6.65934 6.89047 7.35612 7.59704 8.00464 9.02331 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.047317 B = 0.002828 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.609875 B = 9898.844925 C =10015.096962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.087 4.087 4 H 0.081 0.919 5 C -0.152 4.152 6 C -0.096 4.096 7 C -0.132 4.132 8 C 0.505 3.495 9 O -0.589 6.589 10 N -0.715 5.715 11 C 0.158 3.842 12 C -0.127 4.127 13 C 0.146 3.854 14 N -0.619 5.619 15 C -0.249 4.249 16 H 0.053 0.947 17 C -0.034 4.034 18 N -0.955 5.955 19 Si 0.945 3.055 20 H -0.268 1.268 21 H -0.311 1.311 22 H -0.267 1.267 23 C 0.120 3.880 24 C -0.127 4.127 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.415 0.585 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.058 0.942 43 H 0.262 0.738 44 H 0.030 0.970 45 H 0.059 0.941 46 H 0.089 0.911 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.584 -10.488 -1.625 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.105 4.105 4 H 0.099 0.901 5 C -0.209 4.209 6 C -0.134 4.134 7 C -0.171 4.171 8 C 0.293 3.707 9 O -0.470 6.470 10 N -0.366 5.366 11 C 0.053 3.947 12 C -0.167 4.167 13 C 0.021 3.979 14 N -0.344 5.344 15 C -0.379 4.379 16 H 0.071 0.929 17 C -0.229 4.229 18 N -0.601 5.601 19 Si 0.774 3.226 20 H -0.194 1.194 21 H -0.240 1.240 22 H -0.192 1.192 23 C -0.005 4.005 24 C -0.166 4.166 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.251 0.749 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.077 0.923 46 H 0.108 0.892 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.061 -11.118 -1.645 28.381 hybrid contribution 0.864 0.286 -0.571 1.075 sum -25.197 -10.832 -2.216 27.516 Atomic orbital electron populations 1.21808 0.95036 1.01771 1.02248 1.21582 0.96546 0.96354 1.01588 1.21155 0.93602 0.96470 0.99267 0.90066 1.21962 1.01776 1.00720 0.96436 1.21341 0.95488 0.94860 1.01757 1.21781 0.88732 1.00261 1.06351 1.21507 0.91730 0.82916 0.74498 1.90687 1.71328 1.33141 1.51827 1.46105 1.06909 1.09589 1.74040 1.20628 0.79978 0.98189 0.95884 1.22179 0.95955 1.01422 0.97126 1.21009 0.93284 0.88623 0.95002 1.44513 1.44571 1.28526 1.16781 1.18857 1.10517 1.15923 0.92562 0.92934 1.25892 0.97748 0.97234 1.01983 1.69957 1.35873 1.16702 1.37536 0.85942 0.75788 0.79395 0.81517 1.19416 1.23964 1.19179 1.21375 0.93011 0.99135 0.86978 1.22147 0.95906 0.97238 1.01310 0.92065 0.92379 0.92796 0.92548 0.92668 0.91705 0.93422 0.91679 0.93146 0.92912 0.86434 0.86658 0.74865 0.91751 0.91803 0.91910 0.95534 0.92341 0.92876 0.95229 0.92307 0.89242 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 71.98 0.70 -0.84 16 2 C -0.12 -1.57 5.40 30.59 0.17 -1.41 16 3 C -0.09 -1.04 2.39 -10.79 -0.03 -1.07 16 4 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 5 C -0.15 -1.60 8.70 71.98 0.63 -0.98 16 6 C -0.10 -1.63 3.97 30.59 0.12 -1.51 16 7 C -0.13 -1.93 5.45 29.85 0.16 -1.76 16 8 C 0.50 12.21 7.79 87.66 0.68 12.89 16 9 O -0.59 -20.00 15.64 -3.04 -0.05 -20.05 16 10 N -0.72 -16.14 5.08 -442.42 -2.25 -18.39 16 11 C 0.16 4.79 2.42 45.02 0.11 4.89 16 12 C -0.13 -4.23 5.65 30.67 0.17 -4.06 16 13 C 0.15 5.93 6.52 86.36 0.56 6.49 16 14 N -0.62 -29.32 2.77 -699.08 -1.94 -31.26 16 15 C -0.25 -14.17 10.03 84.04 0.84 -13.33 16 16 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 17 C -0.03 -1.97 5.23 84.86 0.44 -1.52 16 18 N -0.95 -59.78 13.97 21.65 0.30 -59.47 16 19 Si 0.94 46.48 24.35 68.60 1.67 48.15 16 20 H -0.27 -12.16 6.62 99.48 0.66 -11.50 16 21 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 22 H -0.27 -12.85 6.63 99.48 0.66 -12.19 16 23 C 0.12 4.99 4.20 86.36 0.36 5.36 16 24 C -0.13 -3.93 5.55 30.67 0.17 -3.76 16 25 H 0.06 0.57 6.57 -2.39 -0.02 0.55 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.58 6.56 -2.39 -0.02 0.57 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.58 6.57 -2.39 -0.02 0.56 16 33 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 34 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 35 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 1.23 6.57 -2.39 -0.02 1.22 16 37 H 0.41 6.56 8.60 -92.70 -0.80 5.77 16 38 H 0.06 2.23 7.58 -2.39 -0.02 2.21 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 43 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.03 1.22 7.07 -2.39 -0.02 1.20 16 45 H 0.06 2.65 4.50 -2.39 -0.01 2.64 16 46 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -71.12 357.36 2.87 -68.24 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.03 Total: 13.39 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.09 Total: -0.61 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -3.88 Total: -109.12 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.67 Total: 48.15 kcal Total: -71.12 2.87 -68.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586776167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.210 kcal (2) G-P(sol) polarization free energy of solvation -71.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds