Wall clock time and date at job start Tue Mar 31 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46958 * 2 1 4 4 H 1.08990 * 109.46914 * 54.99785 * 3 2 1 5 5 C 1.52998 * 109.47174 * 294.99543 * 3 2 1 6 6 C 1.53000 * 109.46662 * 174.99835 * 3 2 1 7 7 C 1.53000 * 109.46747 * 184.99712 * 6 3 2 8 8 C 1.50702 * 109.47064 * 179.97438 * 7 6 3 9 9 O 1.21282 * 120.00242 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00040 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99730 * 180.02562 * 10 8 7 12 12 C 1.53037 * 109.45937 * 275.02488 * 11 10 8 13 13 C 1.53192 * 109.30897 * 178.60273 * 12 11 10 14 14 N 1.46922 * 108.76539 * 54.65977 * 13 12 11 15 15 C 1.36939 * 120.63321 * 126.40258 * 14 13 12 16 16 H 1.07997 * 120.00321 * 331.82454 * 15 14 13 17 17 C 1.38815 * 119.99873 * 151.81784 * 15 14 13 18 18 N 1.31613 * 120.00355 * 343.08411 * 17 15 14 19 19 Si 1.86804 * 119.99472 * 163.08149 * 17 15 14 20 20 H 1.48494 * 109.47259 * 60.00339 * 19 17 15 21 21 H 1.48504 * 109.46723 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47488 * 300.00047 * 19 17 15 23 23 C 1.46930 * 118.74065 * 306.38001 * 14 13 12 24 24 C 1.53041 * 109.45439 * 154.97180 * 11 10 8 25 25 H 1.09007 * 109.47149 * 60.00734 * 1 2 3 26 26 H 1.08997 * 109.47539 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47475 * 300.00273 * 1 2 3 28 28 H 1.09000 * 109.46916 * 240.00013 * 2 1 3 29 29 H 1.09001 * 109.46786 * 120.00079 * 2 1 3 30 30 H 1.08995 * 109.47232 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47003 * 59.99956 * 5 3 2 32 32 H 1.09003 * 109.47245 * 300.00294 * 5 3 2 33 33 H 1.08996 * 109.47228 * 304.99432 * 6 3 2 34 34 H 1.09001 * 109.47422 * 65.00136 * 6 3 2 35 35 H 1.09002 * 109.47445 * 299.99888 * 7 6 3 36 36 H 1.08998 * 109.47001 * 60.00557 * 7 6 3 37 37 H 0.96998 * 119.99906 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.45860 * 35.00421 * 11 10 8 39 39 H 1.08995 * 109.49835 * 298.57036 * 12 11 10 40 40 H 1.08997 * 109.49634 * 58.67067 * 12 11 10 41 41 H 1.08993 * 109.60087 * 294.86905 * 13 12 11 42 42 H 1.08999 * 109.70007 * 174.50434 * 13 12 11 43 43 H 0.97000 * 120.00087 * 179.97438 * 18 17 15 44 44 H 1.09006 * 109.58510 * 293.82486 * 23 14 13 45 45 H 1.08993 * 109.70633 * 173.46664 * 23 14 13 46 46 H 1.09000 * 109.50268 * 301.33639 * 24 11 10 47 47 H 1.08996 * 109.50072 * 61.43681 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4443 0.1258 7 6 4.0644 2.8850 0.2511 8 6 5.5663 2.8867 0.3756 9 8 6.1770 1.8389 0.3647 10 7 6.2309 4.0528 0.4991 11 6 7.6909 4.0545 0.6196 12 6 8.0819 3.8446 2.0842 13 6 9.6090 3.8120 2.2012 14 7 10.1552 5.0366 1.6007 15 6 11.0075 5.8410 2.3092 16 1 10.9466 5.8757 3.3869 17 6 11.9497 6.6118 1.6420 18 7 12.2582 6.3382 0.3922 19 14 12.7797 8.0375 2.5184 20 1 13.5088 7.5302 3.7084 21 1 13.7374 8.6965 1.5943 22 1 11.7524 9.0197 2.9488 23 6 9.7702 5.3816 0.2254 24 6 8.2412 5.3961 0.1304 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.9990 3.1540 -1.3076 31 1 0.5490 2.1252 -1.3970 32 1 2.0699 1.5875 -2.1492 33 1 3.8570 0.8801 1.0114 34 1 4.0030 0.9836 -0.7596 35 1 3.7723 3.4493 -0.6345 36 1 3.6263 3.3457 1.1365 37 1 5.7425 4.8908 0.5083 38 1 8.1062 3.2491 0.0138 39 1 7.6880 4.6630 2.6868 40 1 7.6699 2.8999 2.4390 41 1 9.9977 2.9413 1.6733 42 1 9.8960 3.7607 3.2515 43 1 12.9164 6.8770 -0.0741 44 1 10.1720 4.6388 -0.4638 45 1 10.1615 6.3663 -0.0298 46 1 7.9426 5.5560 -0.9056 47 1 7.8459 6.1998 0.7516 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586776168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:23 Heat of formation + Delta-G solvation = -53.916939 kcal Electronic energy + Delta-G solvation = -22487.776678 eV Core-core repulsion = 19283.604549 eV Total energy + Delta-G solvation = -3204.172129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.76855 -37.72044 -36.97504 -34.36726 -32.60005 -31.95377 -30.15975 -29.56354 -28.74745 -26.17314 -24.86098 -22.95640 -22.21784 -21.58290 -20.12014 -20.01459 -19.19120 -17.13709 -16.50318 -15.92435 -15.65275 -15.17402 -14.81331 -14.55745 -13.95226 -13.83860 -13.60941 -13.49772 -13.35049 -12.95863 -12.85562 -12.46626 -12.34854 -12.21744 -11.89028 -11.88690 -11.45473 -11.15442 -11.10903 -10.84250 -10.79924 -10.75194 -10.71245 -10.64848 -10.48091 -10.27332 -10.03156 -9.84562 -9.65975 -9.39448 -8.66804 -8.44643 -6.67931 -5.79192 -3.21530 2.85770 3.37774 3.43540 3.44174 3.45278 4.48527 4.49675 4.61049 4.62549 4.92579 5.00441 5.14116 5.16820 5.28836 5.29852 5.34463 5.41118 5.49108 5.52079 5.54520 5.61867 5.68049 5.75632 5.80701 5.84438 5.86065 5.89958 6.03268 6.09194 6.18821 6.24838 6.29499 6.37308 6.54472 6.57893 6.61558 6.80999 6.95724 7.00589 7.32219 7.60557 7.76983 7.81320 8.44854 8.47758 9.21056 9.84286 10.41616 11.29730 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.052416 B = 0.002649 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.064104 B =10566.014468 C =10701.306461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.069 0.931 5 C -0.152 4.152 6 C -0.099 4.099 7 C -0.142 4.142 8 C 0.507 3.493 9 O -0.544 6.544 10 N -0.727 5.727 11 C 0.150 3.850 12 C -0.138 4.138 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.252 4.252 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 0.903 3.097 20 H -0.282 1.282 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.174 3.826 24 C -0.146 4.146 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.395 0.605 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.056 0.944 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.046 -6.382 -2.239 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.209 4.209 6 C -0.137 4.137 7 C -0.182 4.182 8 C 0.293 3.707 9 O -0.422 6.422 10 N -0.377 5.377 11 C 0.047 3.953 12 C -0.178 4.178 13 C 0.020 3.980 14 N -0.316 5.316 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.048 3.952 24 C -0.186 4.186 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.228 0.772 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.444 -7.057 -2.353 22.697 hybrid contribution 0.217 1.239 0.403 1.321 sum -21.227 -5.818 -1.950 22.096 Atomic orbital electron populations 1.21826 0.96055 1.01421 1.01783 1.21569 0.95650 0.96382 1.02200 1.21206 0.95396 0.96237 0.98363 0.91240 1.21954 1.01120 1.00526 0.97278 1.21384 0.93925 0.94896 1.03461 1.21755 0.92516 1.00024 1.03944 1.20714 0.89994 0.83950 0.76051 1.90694 1.69992 1.31451 1.50056 1.46394 1.08788 1.08350 1.74150 1.21021 0.77706 0.99359 0.97261 1.22359 0.99460 1.00435 0.95584 1.20873 0.90024 0.89658 0.97411 1.44085 1.52498 1.22236 1.12742 1.19150 1.09645 1.18545 0.90870 0.91702 1.25062 0.96826 1.01065 0.96754 1.70015 1.34125 1.39514 1.11144 0.86356 0.78918 0.82662 0.78743 1.20866 1.21644 1.21066 1.20738 0.86956 1.01772 0.85765 1.22528 1.01627 0.95119 0.99341 0.92564 0.92983 0.92864 0.91944 0.91932 0.92548 0.92636 0.92644 0.91226 0.91204 0.89058 0.89274 0.77192 0.90168 0.92412 0.92816 0.96219 0.92589 0.93546 0.96152 0.89060 0.92815 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.12 -0.90 5.40 -26.73 -0.14 -1.04 16 3 C -0.09 -0.72 2.39 -90.62 -0.22 -0.93 16 4 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 5 C -0.15 -1.06 8.70 37.16 0.32 -0.73 16 6 C -0.10 -0.98 3.97 -26.73 -0.11 -1.08 16 7 C -0.14 -1.38 5.45 -27.88 -0.15 -1.53 16 8 C 0.51 7.24 7.79 -10.98 -0.09 7.16 16 9 O -0.54 -10.10 15.64 5.56 0.09 -10.02 16 10 N -0.73 -10.17 5.08 -53.76 -0.27 -10.44 16 11 C 0.15 2.65 2.42 -67.89 -0.16 2.49 16 12 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 13 C 0.15 3.23 6.52 -3.71 -0.02 3.20 16 14 N -0.59 -14.97 2.99 -172.32 -0.52 -15.49 16 15 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 16 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 17 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 18 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 19 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 24 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 25 H 0.06 0.34 6.57 -51.92 -0.34 0.00 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 31 H 0.05 0.35 6.56 -51.93 -0.34 0.00 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.09 0.73 6.56 -51.93 -0.34 0.39 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.39 4.37 8.60 -40.82 -0.35 4.02 16 38 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 2.39 6.07 -51.93 -0.31 2.08 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -31.13 363.80 -9.11 -40.24 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.72 Total: 0.91 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -0.76 Total: -1.69 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.17 Total: -51.50 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.13 -9.11 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586776168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.676 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds