Wall clock time and date at job start Tue Mar 31 2020 06:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46704 * 2 1 4 4 N 1.46897 * 109.47183 * 119.99970 * 2 1 3 5 5 C 1.46897 * 111.00156 * 175.00132 * 4 2 1 6 6 C 1.53241 * 109.33973 * 187.25232 * 5 4 2 7 7 N 1.47075 * 108.52064 * 306.17201 * 6 5 4 8 8 C 1.34780 * 120.87669 * 231.18923 * 7 6 5 9 9 O 1.21280 * 120.00423 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99795 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00129 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99861 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00050 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00180 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47117 * 90.00278 * 18 16 14 20 20 H 1.48501 * 109.47010 * 210.00349 * 18 16 14 21 21 H 1.48506 * 109.47147 * 329.99935 * 18 16 14 22 22 C 1.47074 * 118.24014 * 51.45789 * 7 6 5 23 23 C 1.46904 * 110.99901 * 299.30199 * 4 2 1 24 24 H 1.09001 * 109.47079 * 300.00404 * 1 2 3 25 25 H 1.09007 * 109.47091 * 60.00305 * 1 2 3 26 26 H 1.08994 * 109.47034 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46926 * 240.00082 * 2 1 3 28 28 H 1.09000 * 109.46640 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46837 * 299.99416 * 3 2 1 30 30 H 1.08997 * 109.47362 * 60.00349 * 3 2 1 31 31 H 1.09001 * 109.49120 * 67.28868 * 5 4 2 32 32 H 1.09003 * 109.48945 * 307.21315 * 5 4 2 33 33 H 1.09003 * 109.62612 * 186.45868 * 6 5 4 34 34 H 1.09003 * 109.62821 * 65.87958 * 6 5 4 35 35 H 1.09002 * 109.47060 * 299.99722 * 10 8 7 36 36 H 1.09001 * 109.47380 * 59.99809 * 10 8 7 37 37 H 1.09002 * 109.47153 * 299.99998 * 11 10 8 38 38 H 1.08998 * 109.47533 * 59.99628 * 11 10 8 39 39 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 40 40 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 41 41 H 1.09002 * 109.47153 * 300.00216 * 13 12 11 42 42 H 1.09001 * 109.47289 * 60.00300 * 13 12 11 43 43 H 0.97000 * 120.00500 * 180.02562 * 17 16 14 44 44 H 1.08994 * 109.63016 * 68.25422 * 22 7 6 45 45 H 1.09001 * 109.62513 * 188.83332 * 22 7 6 46 46 H 1.08997 * 109.49121 * 292.70801 * 23 4 2 47 47 H 1.08999 * 109.49142 * 52.78600 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4832 -0.8164 1.1751 6 6 3.9374 -1.6972 2.3440 7 7 3.3805 -1.1456 3.5885 8 6 4.1714 -0.9038 4.6527 9 8 5.3591 -1.1417 4.5921 10 6 3.5798 -0.3389 5.9183 11 6 4.6838 -0.1616 6.9626 12 6 4.0833 0.4125 8.2473 13 6 5.1872 0.5891 9.2918 14 6 4.5955 1.1541 10.5575 15 1 3.5380 1.3663 10.6113 16 6 5.4045 1.4010 11.6463 17 7 4.8881 1.8935 12.7510 18 14 7.2338 1.0345 11.5530 19 1 7.9546 2.2351 11.0588 20 1 7.7365 0.6765 12.9037 21 1 7.4647 -0.0995 10.6223 22 6 1.9367 -0.8705 3.6429 23 6 1.5623 -0.0167 2.4210 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.9335 0.1719 1.2679 32 1 3.7941 -1.2714 0.2346 33 1 5.0260 -1.6994 2.3993 34 1 3.5732 -2.7143 2.1991 35 1 3.1218 0.6272 5.7057 36 1 2.8231 -1.0229 6.3026 37 1 5.1413 -1.1278 7.1752 38 1 5.4408 0.5222 6.5787 39 1 3.6260 1.3788 8.0344 40 1 3.3261 -0.2710 8.6315 41 1 5.6441 -0.3774 9.5046 42 1 5.9447 1.2725 8.9079 43 1 5.4573 2.0676 13.5170 44 1 1.3840 -1.8096 3.6206 45 1 1.7021 -0.3259 4.5575 46 1 2.0394 0.9604 2.4965 47 1 0.4802 0.1083 2.3841 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588279380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:43 Heat of formation + Delta-G solvation = -48.505146 kcal Electronic energy + Delta-G solvation = -22467.519268 eV Core-core repulsion = 19263.581812 eV Total energy + Delta-G solvation = -3203.937456 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.49794 -38.85257 -35.76236 -35.02612 -32.73226 -32.09176 -31.32474 -30.04501 -27.69934 -27.18256 -25.64669 -24.09631 -22.66159 -21.49908 -20.29045 -20.01014 -18.68906 -17.24630 -16.57347 -16.29211 -15.92096 -15.77285 -15.43022 -15.05608 -14.64586 -14.36210 -14.17128 -13.82399 -13.51841 -13.06933 -12.86032 -12.68569 -12.61728 -12.33650 -12.21673 -12.09221 -11.88322 -11.75367 -11.68470 -11.37284 -11.28096 -11.09988 -10.99578 -10.70040 -10.52000 -9.90606 -9.78462 -9.63122 -9.39573 -9.10433 -9.01724 -8.56754 -8.48131 -5.99406 -3.96751 2.65608 2.81803 3.36347 3.43294 3.44845 3.49666 4.36690 4.37217 4.51304 4.54565 4.65056 4.73288 4.82200 4.86871 4.95583 5.03951 5.14567 5.17478 5.21204 5.26735 5.29850 5.35173 5.36178 5.40664 5.45508 5.53097 5.59050 5.67888 5.77217 5.79820 5.85410 6.04499 6.15110 6.29585 6.44464 6.62629 6.63906 6.70068 6.83762 7.00799 7.29568 7.39839 7.52623 7.86105 8.17846 8.59595 9.05599 9.64073 11.14098 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033049 B = 0.002690 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.033158 B =10406.534397 C =10801.682711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.189 4.189 4 N -0.531 5.531 5 C 0.040 3.960 6 C 0.116 3.884 7 N -0.622 5.622 8 C 0.515 3.485 9 O -0.538 6.538 10 C -0.138 4.138 11 C -0.106 4.106 12 C -0.102 4.102 13 C -0.016 4.016 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.264 1.264 22 C 0.112 3.888 23 C 0.033 3.967 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.016 0.984 42 H 0.011 0.989 43 H 0.262 0.738 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.043 0.957 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.588 -5.145 -28.869 30.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.247 4.247 4 N -0.256 5.256 5 C -0.088 4.088 6 C -0.007 4.007 7 N -0.357 5.357 8 C 0.305 3.695 9 O -0.415 6.415 10 C -0.177 4.177 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.012 4.012 23 C -0.096 4.096 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.062 0.938 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.085 -5.696 -28.703 30.641 hybrid contribution 1.177 0.776 -0.006 1.410 sum -7.908 -4.920 -28.709 30.182 Atomic orbital electron populations 1.21885 0.94084 1.02555 1.01823 1.21720 0.95922 0.92453 0.93136 1.22497 1.01588 0.98083 1.02567 1.62201 1.10520 1.50981 1.01855 1.22499 0.87724 0.99415 0.99175 1.21630 1.00093 0.96744 0.82226 1.48254 1.08604 1.65145 1.13691 1.21092 0.86525 0.77127 0.84797 1.90684 1.15731 1.52128 1.82913 1.21795 1.01016 1.01994 0.92929 1.21487 0.96419 1.02115 0.94377 1.21472 0.99331 0.99585 0.93580 1.19577 0.94633 0.96511 0.94572 1.21186 0.96750 1.41884 0.95852 0.91109 1.25045 0.98660 0.94634 0.95299 1.69921 1.35851 1.45278 1.03519 0.86774 0.85878 0.79405 0.77242 1.20341 1.21459 1.18883 1.21952 0.80624 1.00291 0.98320 1.22676 1.01317 0.95870 0.89695 0.92380 0.92202 0.91707 0.89900 0.92516 0.91969 0.92215 0.94051 0.89718 0.88752 0.91018 0.89154 0.88983 0.91777 0.91885 0.92919 0.92826 0.96610 0.97087 0.92828 0.90534 0.88869 0.93839 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.00 37.16 0.33 -0.42 16 2 C 0.08 0.46 2.96 -67.71 -0.20 0.26 16 3 C -0.19 -1.17 8.51 37.16 0.32 -0.85 16 4 N -0.53 -3.93 4.61 -226.05 -1.04 -4.97 16 5 C 0.04 0.32 5.14 -3.70 -0.02 0.31 16 6 C 0.12 1.14 6.60 -3.60 -0.02 1.12 16 7 N -0.62 -6.80 3.00 -172.19 -0.52 -7.32 16 8 C 0.52 7.28 7.71 -10.98 -0.08 7.20 16 9 O -0.54 -9.72 15.43 5.56 0.09 -9.64 16 10 C -0.14 -1.81 4.06 -27.88 -0.11 -1.92 16 11 C -0.11 -1.82 4.50 -26.74 -0.12 -1.94 16 12 C -0.10 -2.03 5.15 -26.74 -0.14 -2.17 16 13 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 14 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.54 13.96 55.43 0.77 -27.76 16 18 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 21 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 22 C 0.11 0.90 6.53 -3.37 -0.02 0.87 16 23 C 0.03 0.24 4.78 -3.46 -0.02 0.22 16 24 H 0.06 0.30 6.27 -51.93 -0.33 -0.03 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 28 H 0.06 0.39 6.69 -51.93 -0.35 0.04 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 31 H 0.04 0.38 6.81 -51.93 -0.35 0.02 16 32 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 33 H 0.09 1.07 7.06 -51.93 -0.37 0.70 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.03 7.67 -51.93 -0.40 0.63 16 36 H 0.09 1.05 7.99 -51.93 -0.41 0.64 16 37 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 38 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 42 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.66 6.02 -51.93 -0.31 0.35 16 46 H 0.04 0.36 6.71 -51.93 -0.35 0.01 16 47 H 0.09 0.54 5.97 -51.93 -0.31 0.23 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -33.83 357.46 -9.12 -42.95 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -8.51 Total: -5.00 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.63 Total: -11.51 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: -0.79 Total: -40.05 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.83 -9.12 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588279380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.557 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds